Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01644 ATGGCAAACACAATGGCTAGATCTTTTCTGCAGGTCGCCGTCACGGAAGAGGTGGCATCCCCTCTCCGAGTTGTTCAGATTGAAGGCTTGGTTATACTGAAGATAATCAAGCATTGCAAGGAGTTTTCACCCTCCCTTGTGACTGGGCAACTTCTTGGGTTAGATGTTGGTAGCGTTCTTGAAGTTACCAATTGCTTTCCCTTCCCGACACGAGAGGAGGATGAGGAGATTGAAGCCGATGGTGCTAATTACCAGCTTGAAATGATGAGATGTCTGAGAGAAGTCAATGTTGACAATAACACTGTTGGATGGTACCAGTCAACCTTCTTAGGTTCATATCAGACTGTAGAGTTGATTGAGACCTTTATGAATTATCAGGAAAATATCAGGCGGTGTGTCTGCATTATTTATGACCCATCAAGGTCTAATCAAGGCGTCTTAGCTCTCAAGGCATTGAAGCTTTCAGATTCTTTTATGGAGCTTTACCGCAGTAACAACTTTACAGGAGAGAAGTTGAGGGAGAAGAATTTCTCATGGGTTGATATTTTTGAGGAAATACCTATAAAAGTTTCAAATTCAGCCCTCATTAGTGCTTTTATGACTGAGCTTGAAGCTGACTCTCCAGTCACCCAGTGTGATTATGACCGCCTACAACTTTCAACTAATCCATTTATGGAGAGGAATGTGGAATTTCTTATTGAATGTATGGATGATTTGTCGGTGGAGCAGCAGAAGTTTCAATTCTATTATCGGAGTCTGACCCGTCAGCAAGCTCAGCAGCAAGCATGGCTTCAGAAGAGAAGGGCTGAGAACATGGCGAGGAAGGCAGCAGGAGAAGAACCTCTCCCTGAGGAGGATCCTGCGAACCCCATCTTTAAACCACTCCCTGAGCCATCACGTTTGGATAGCTATCTCATAACCAATCAAATAGGAAACTACTGCAACCAAATCAATGGGGTTGCGGGACAGAGTTTCAACAGACTTCATTTGATGAAGGCTTTACATGACAATTAA 1014 43.59 MANTMARSFLQVAVTEEVASPLRVVQIEGLVILKIIKHCKEFSPSLVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRSNNFTGEKLREKNFSWVDIFEEIPIKVSNSALISAFMTELEADSPVTQCDYDRLQLSTNPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQAWLQKRRAENMARKAAGEEPLPEEDPANPIFKPLPEPSRLDSYLITNQIGNYCNQINGVAGQSFNRLHLMKALHDN 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11440290 11444345 - CmoCh06G016440.1 Cmo06g01644 385206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01644 337 MobiDBLite consensus disorder prediction 274 294 - -
Cmo06g01644 337 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 23 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cmo06g01644 337 CDD MPN_eIF3h 23 286 IPR027524 GO:0003743|GO:0005737|GO:0005852
Cmo06g01644 337 ProSiteProfiles MPN domain profile. 25 158 IPR037518 -
Cmo06g01644 337 Pfam C-terminal region of eIF3h 143 335 IPR045810 -
Cmo06g01644 337 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 20 337 IPR027524 GO:0003743|GO:0005737|GO:0005852
Cmo06g01644 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 3 337 - -
Cmo06g01644 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H 3 337 - -
Cmo06g01644 337 SMART pad1_6 24 157 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cmo06g01644 337 Gene3D Cytidine Deaminase, domain 2 2 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01644 Cmo-Chr6:11440290 Cmo09g00208 Cmo-Chr9:972950 2.14E-09 dispersed
Cmo14g01516 Cmo-Chr14:12147465 Cmo06g01644 Cmo-Chr6:11440290 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01644 K03247 - csv:101211860 655.595