Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01649 ATGTTCTTGAAGAAGATGAGTGGTTGGAGAGGTGGATTGTTTGTGGAATTGGTTGTTTTTGCAGATATGTGTCTGATGGTGTCTGGTTTAGGCTCTATGGCTTCTGTGGCTGTTTCTTATGGCGAGAAAGGGCCTGTTTTCTGTGGTTTAATGGCAGATGGGTCTCATCTCGTGAGCTGTTTTGGTTCAAATTCAGCCATAACTTACGGAACTCCTTCTCATTTCCCCTTCATTGGTCTCACTGCTGGTGATGGTTTTGTTTGTGGGCTTCTTTTGGATTCCAACCAGCCTTACTGTTGGGGAAGCAGTGGCTATGTTCAAATGGGTGTTCCTCAGCCCATGATCAAAGCCGCTCAATACCAGGAAATCAGTGCTGGTGATTACCATCTCTGTGGCCTCCGAACACCGCTAACTGGAAGGCATAGGAACAACACGTCTTTTGTTGATTGTTGGGGTTACAACATGACAAGAACCTTTGTGTTTGATGGCCCGATTGAATCGATCTCGGCAGGGTCTGAGTTCAACTGTGGGCTGTTTTCTCTTAATAGAACTGTTTTGTGTTGGGGCGATGAGACGAGCAGCCGGGTCATCAGTTTGATACCTAAAGATATGAGGTTTCTAAAGATTGCTGCTGGTGGATATCATGTTTGTGGGATTCTAGAGGGCATTAAGGCGAGGGCGTTCTGTTGGGGAAGGAGCTTAGACATTGAAGGAAGTGCAGACTTGGTTCCAGTTGATCCATTAGACTCTGTTGTTGGGGGCAAGTTTCATGCTTGTGGGATCAAGAGCATGGACCGTGGTGTGATTTGTTGGGGCTTTACAGTCAAACCAAGCACTCCAGCGCCGGATGGGATTAAGGTTTATGACATAGCAGCTGGAGATTACTTCACTTGTGGAATTCTAGCTGAGAAATCTCTCCTGCCTGTTTGCTGGGGTCTTGGATTTCCTAGTTCTATACCCTTAGCTGTGTCGCCTGGAGTCTGTAAAGCAACTCCTTGTGCTCCTGGTTTCTATGAACTAAGCCAAGACAGTGCTCGGTGCAAGTCGCCGAGTTTTCGTGTGTGTATGCCCTGCAGTACTACATGCCCTCCTGAGATGTACCAAAAATTTGAATGCTCCTTAAAATCTGATAGACAATGTGAATATAACTGTTCAAGTTGTTTTTCTTCGGAGTGTTCATCAAACTGTTCATCCATTAGTTCAAATGGCTTGATGGGGAAGAAAAATGAGAAGTTGTGGTCAATGCAGCTTCCAGCTCTGGTAGCAGAGGTTGCTTTTGCTCTGTTTTTGGTAGCTATTGTGTCGCTAACTGCGATCTTATACGTTCGGTATAAGTTACGGAGCTTCCATTGTTCCGAAAAGGAGTTGAAGTCTAAGAAGAACCAAGGGACTGCCTCTTCCTTCCAGAAGGAAAGCTACAAAATACGTCCCGACTTAGATGAGCTAAAGATAATGAGGGCTCGGATGTTCACTTACGAAGAACTCGTGGGAGCGACGTGCGGGTTTAAGGAAGATTCAATGGTGGGAAAGGGAAGTTTCTCCTGTGTTTTCCGAGGTGTTTTAAACAACGGGACGGTTGTAGCAGTGAAACGAGCTATAATGTCTCACAACAAGCAGAAGAATTCAAAAGAGTTTCACACTGAACTTGACTTGCTGTCAAGATTAAACCATGCTCATTTGCTTAATCTACTTGGTTATTGTGAAGAAGGTGGAGAGAGGCTTCTAGTTTATGAGTTCATGGCTCATGGTTCCTTATATCAGCACCTTCATGGCAAGAACAAGGCCTTGAAAGAGCAACTAGATTGGATAAGAAGGGTCACCATTGCAGTCCAAGCAGCAAGGGGAATTGAATACTTGCACGGCTATGCTTGTCCTCCCGTCATCCATCGGGACATCAAATCGTCAAACATTCTTATTGACGAGGAGCATAACGCTCGAGTAGCCGATTTTGGCTTGTCGTTGTTAGGGCCAGCGGATGGCAGCTCTCCATTAGCAGAGCTACCGGCCGGAACTCTTGGCTATCTTGATCCTGAATACTACAGACTTCACTACCTTACAACCAAGTCTGATGTCTATAGCTTTGGTGTTTTGCTACTCGAAATTCTCAGCGGTAGAAGAGCCATTGATATGCAATATGAAGAAGGGAACATAGTAGAATGGGCAGTGCCATTGATCAAATCTGGAGATATCTCTGCAGTTTTAGATCCGATACTAAAACCGCCATCCGATATCGAGGCCTTGAAGAGGATAGCAAACGTAGCTTGTACATGTGTGAGAATGAGGGCGAAGGAGAGGCCATCAATGGACAAAGTCACGACGGCATTGGAACGTGCTCTTGCCCAGTTAATGGGAAGTCCATATAATGAACAACCAATCTTACCAACGGAGGTGGTTTTAGGAAGCAGTAGACTGCATAAAAAGTCATCTCAAAGATCATTGAACCATTCTGTCTCCGAAACGGATATAGCAGAATCTGAGGATCAAAGGTTCGAGTTCAGAGCTCCATCGTGGATTACGTTCCCGAGCGTGACGTCGTCCCAGCGGAGGAAATCCTCAGCTTCGGAAGCAGATGTTGATGGAAAGAATTTAGAAGGAAGAAATGGGGATGGATTGAAGAGTTTAGAGGAAGAGATTGAGCCTGCTTCCCCTCAGGAAAAGCTGTTCTTGGAGCACAATTTCTAA 2682 45.41 MFLKKMSGWRGGLFVELVVFADMCLMVSGLGSMASVAVSYGEKGPVFCGLMADGSHLVSCFGSNSAITYGTPSHFPFIGLTAGDGFVCGLLLDSNQPYCWGSSGYVQMGVPQPMIKAAQYQEISAGDYHLCGLRTPLTGRHRNNTSFVDCWGYNMTRTFVFDGPIESISAGSEFNCGLFSLNRTVLCWGDETSSRVISLIPKDMRFLKIAAGGYHVCGILEGIKARAFCWGRSLDIEGSADLVPVDPLDSVVGGKFHACGIKSMDRGVICWGFTVKPSTPAPDGIKVYDIAAGDYFTCGILAEKSLLPVCWGLGFPSSIPLAVSPGVCKATPCAPGFYELSQDSARCKSPSFRVCMPCSTTCPPEMYQKFECSLKSDRQCEYNCSSCFSSECSSNCSSISSNGLMGKKNEKLWSMQLPALVAEVAFALFLVAIVSLTAILYVRYKLRSFHCSEKELKSKKNQGTASSFQKESYKIRPDLDELKIMRARMFTYEELVGATCGFKEDSMVGKGSFSCVFRGVLNNGTVVAVKRAIMSHNKQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLYQHLHGKNKALKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADGSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRRAIDMQYEEGNIVEWAVPLIKSGDISAVLDPILKPPSDIEALKRIANVACTCVRMRAKERPSMDKVTTALERALAQLMGSPYNEQPILPTEVVLGSSRLHKKSSQRSLNHSVSETDIAESEDQRFEFRAPSWITFPSVTSSQRRKSSASEADVDGKNLEGRNGDGLKSLEEEIEPASPQEKLFLEHNF 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11458276 11460957 + CmoCh06G016490.1 Cmo06g01649 385211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01649 893 Gene3D Transferase(Phosphotransferase) domain 1 580 788 - -
Cmo06g01649 893 PANTHER RECEPTOR-LIKE KINASE 13 893 - -
Cmo06g01649 893 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 332 380 IPR001368 GO:0005515
Cmo06g01649 893 Pfam Protein tyrosine and serine/threonine kinase 505 774 IPR001245 GO:0004672|GO:0006468
Cmo06g01649 893 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Cmo06g01649 893 ProSitePatterns Protein kinases ATP-binding region signature. 508 530 IPR017441 GO:0005524
Cmo06g01649 893 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 13 893 - -
Cmo06g01649 893 ProSiteProfiles Protein kinase domain profile. 502 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01649 893 MobiDBLite consensus disorder prediction 852 893 - -
Cmo06g01649 893 CDD STKc_IRAK 508 777 - -
Cmo06g01649 893 Gene3D Phosphorylase Kinase; domain 1 472 579 - -
Cmo06g01649 893 Gene3D - 157 324 IPR009091 -
Cmo06g01649 893 MobiDBLite consensus disorder prediction 843 893 - -
Cmo06g01649 893 SUPERFAMILY RCC1/BLIP-II 30 273 IPR009091 -
Cmo06g01649 893 SMART serkin_6 502 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01649 893 Gene3D - 27 156 IPR009091 -
Cmo06g01649 893 SUPERFAMILY Protein kinase-like (PK-like) 483 775 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01649 Cmo14g01512 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01289 Cmo-Chr3:9752806 Cmo06g01649 Cmo-Chr6:11458276 3.78E-48 dispersed
Cmo06g01649 Cmo-Chr6:11458276 Cmo07g00975 Cmo-Chr7:4784736 3.57E-111 dispersed
Cmo14g01512 Cmo-Chr14:12125350 Cmo06g01649 Cmo-Chr6:11458276 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74440 PF07714 PK_Tyr_Ser-Thr 1.40E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01649 - - csv:101210393 1599.72