Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01652 ATGATGCCCCAAACAGAAAACATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAACGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAGGTTCTCAGAATGTTAGGGAATGGTCGGTGTGAGGCGACGTGCATAGATGGGACAAAGCGTCTATGCCATATCCGGGGGAAGATGCACAAAAAGGTTTGGATTGCAGCTGGCGATATAATACTTGTCGGTCTTCGCGACTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCCGATGAAGCAAGGCTGTTGAAGGCATATGGTGAACTTCCTGAGAACACCCGTCTCAACGAGGGTATTGCTGGTGGTATCGACGATGAGGATGATGGTGGTGCTGATGACTATCTTGAGTTCGAGGACGAAGATATCGACAAGATTTAG 459 47.49 MMPQTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11464500 11465877 - CmoCh06G016520.1 Cmo06g01652 385214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01652 152 ProSiteProfiles S1 domain IF1 type profile. 29 103 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cmo06g01652 152 SMART eIF1neu4 35 117 IPR001253 GO:0003743|GO:0006413
Cmo06g01652 152 Pfam Translation initiation factor 1A / IF-1 39 100 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cmo06g01652 152 ProSitePatterns Eukaryotic initiation factor 1A signature. 48 70 IPR018104 GO:0003743|GO:0006413
Cmo06g01652 152 Gene3D - 9 152 IPR012340 -
Cmo06g01652 152 TIGRFAM eIF-1A: translation initiation factor eIF-1A 21 117 IPR001253 GO:0003743|GO:0006413
Cmo06g01652 152 MobiDBLite consensus disorder prediction 1 32 - -
Cmo06g01652 152 PANTHER EIF-1A 8 152 IPR001253 GO:0003743|GO:0006413
Cmo06g01652 152 SUPERFAMILY Nucleic acid-binding proteins 9 151 IPR012340 -
Cmo06g01652 152 Hamap Translation initiation factor 1A [eif1a]. 23 117 IPR001253 GO:0003743|GO:0006413
Cmo06g01652 152 CDD S1_IF1A 40 116 IPR001253 GO:0003743|GO:0006413
Cmo06g01652 152 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 8 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01652 Cmo-Chr6:11464500 Cmo20g00664 Cmo-Chr20:3242551 9.36E-101 dispersed
Cmo14g01510 Cmo-Chr14:12111999 Cmo06g01652 Cmo-Chr6:11464500 2.47E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01652 K03236 - ini:109155805 265.003