Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01673 ATGGAGTTAGAATCATACTACGAAATTTCCCGCACCGCCGACTACATTCACACTCGGAACTTTACCAGAGTCGCATTGCAGTTTCCTGATGAGCTCTTGAAGGATTCAACTAGAGTGGTCAGTGCTTTAAGGAAAAGACTCTGTGCGCTTAATGATACAAACCAAAGCGATGGCGAAAATAAGGTTAGGTTGTTCATAATGGCTGATACGACTTACGGTAGCTGTTGCGTTGATGAGGTTGGGGCAGCCCACGCTAATGCTGATTGTGTCATTCACTATGGACATACATGTCTGAGCCCGACAACAACTCTTCCAGCATTTTTTGTTTTCGGAAAGGATCCAATTGATGTCTCCACTTGTGCCAAAACATTATCTCACTACAGTTCGTCCAATGGAAAGCCTGTTTTGGTTCTTTTTGGGTTGGAATATGCGCATTCAATGGATGATATTAGACAAGCACTATTAGATTCATTTCAGACAAGCGGTCTGACGTCAGAATTGGAAGTACATTTTGCAGATGTTAAATGTTCAAGTTTGGATCCGTCCTCCCATAATGAAAATGTTGCCAGAGGTGGGGAACAAGTTACCAATGCTGAAAGTGAGAGTTCTGAGAACATTGCTGGAACCAGACATCACATTGGAAGCTTGTTTTGGGATTTACATAGAGAGCGAAGAATGGAGGACTGCTCAATTTTCTGGATTGGTTCTGAAAATTCAGCCTTCGCAAATGTGGTTCTGACATTCAATGGCTGTGAGATAGTCAGATACGATGCAAAAGAAAGTTGCTTGGTTACTGATGTATCTCAGCAAAGAAGGATCCTCAAGCGCAGATATTACTTGGTGGAGAAGGCAAAGGATGCTGGCATTGTTGGAATTTTGGTTGGTACTCTTGGTTTAGCTGGTTACCTCCATATCATTCATCAGATGAAAGAGCTGATCACTGGAGCAGGGAAGAAGGCTTATACTCTTGTTATGGGGAGGCCCAATCCTGCAAAACTTGCCAACTTCCCAGAGTGTGGTGTTTTCATATATGTTTCTTGTGCCCAAACTGCACTTATGGATAGCAAGGAGTATCTTGCTCCAGTCATTACTCCATTTGAAGCCACACTAGCTTTCACCAGAGGAAGTCAATGGACAGGCGCCTACATTATGGAATTTCAGGATTTGATTAATTTCCCAATACCTAACGAAGGAAACCGATCAGATGAAGCGAGATATTCATTCTTGCAAGGCAGATATGTGGAAGATTATGATTCCCAAGAAAATGTTGAGGAAGAAAATGAAGCTTGCGCTCTAGTAAGTGCAACAGAGAAAGCTCTCCAGATACGCGATAACCGAAACTCGCTAATTGAAGGAACTGCAAGGTCTGGAGCGGAATTTTTTGCAGCTCGTTCCTTTCAAGGTTTAGATATTCAAAATGGTAGTTCCCAGCCGGAGCCATATCTAATCGGGAGGAGCGGCAGGGCATCCGGGTATCAAGACGAGAAAAATAGTCAAAATAGTTAA 1506 42.9 MELESYYEISRTADYIHTRNFTRVALQFPDELLKDSTRVVSALRKRLCALNDTNQSDGENKVRLFIMADTTYGSCCVDEVGAAHANADCVIHYGHTCLSPTTTLPAFFVFGKDPIDVSTCAKTLSHYSSSNGKPVLVLFGLEYAHSMDDIRQALLDSFQTSGLTSELEVHFADVKCSSLDPSSHNENVARGGEQVTNAESESSENIAGTRHHIGSLFWDLHRERRMEDCSIFWIGSENSAFANVVLTFNGCEIVRYDAKESCLVTDVSQQRRILKRRYYLVEKAKDAGIVGILVGTLGLAGYLHIIHQMKELITGAGKKAYTLVMGRPNPAKLANFPECGVFIYVSCAQTALMDSKEYLAPVITPFEATLAFTRGSQWTGAYIMEFQDLINFPIPNEGNRSDEARYSFLQGRYVEDYDSQENVEEENEACALVSATEKALQIRDNRNSLIEGTARSGAEFFAARSFQGLDIQNGSSQPEPYLIGRSGRASGYQDEKNSQNS 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11574597 11580732 - CmoCh06G016730.1 Cmo06g01673 385235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01673 501 TIGRFAM diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain 6 372 IPR016435 GO:0017183|GO:0090560
Cmo06g01673 501 MobiDBLite consensus disorder prediction 471 501 - -
Cmo06g01673 501 SFLD Diphthamide biosynthesis family (Dph2) 2 498 - -
Cmo06g01673 501 TIGRFAM DPH2: diphthamide biosynthesis protein 2 3 493 IPR010014 GO:0017183
Cmo06g01673 501 PANTHER 2-(3-AMINO-3-CARBOXYPROPYL)HISTIDINE SYNTHASE SUBUNIT 2 1 500 IPR010014 GO:0017183
Cmo06g01673 501 Pfam Putative diphthamide synthesis protein 28 382 IPR016435 GO:0017183|GO:0090560
Cmo06g01673 501 SFLD Radical SAM 3-amino-3-carboxypropyl Radical Forming 2 500 IPR016435 GO:0017183|GO:0090560
Cmo06g01673 501 PANTHER DIPHTHAMIDE BIOSYNTHESIS PROTEIN 1 500 IPR016435 GO:0017183|GO:0090560
Cmo06g01673 501 SFLD Diphthamide biosynthesis 2 497 - -
Cmo06g01673 501 Gene3D Diphthamide synthesis DPH1/DPH2 domain 1 9 113 IPR042263 -
Cmo06g01673 501 Gene3D Diphthamide synthesis DPH1/DPH2 domain 3 270 372 IPR042265 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01673 K17866 DPH2; diphthamide biosynthesis protein 2 - csv:101217867 863.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01673 Cmo-Chr6:11574597 Cmo11g01506 Cmo-Chr11:10688869 4.36E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1310 . . . . . Bpe14g00784 . . . . . . Car06g01425 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g00544 . . . . . Cmo06g01673 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011291 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 2 1 0 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01673 Cmo_Chr06 FPKM 0.0 0.0 138.099533 135.674713 1.67914 1.491501 1.621032 0.193851 0.0 0.0