Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01675 ATGATTGCGAGCTCTCTTTGCAATGCTTCCGCTAAGTTCCCGGCAGAAGTGGTGGAGGTAGAAACAATGATGGAACAGAAAAGGAACCTATGCTCTGTTGATGAGAGCAGCCTCACTTCTCTTACATCCAAGCGTCGCAAGGCAGATTTTTCTATCTCCTCTAAGGAAAAGAAAGACAAACTGGGCGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATTCGGAAAGACAGATACGGCATCTGTTCTTCTTGAGGCCATGGAATATATTCAATTCCTTCACGAGCAAGTCAAGCCTATGGTTGAGAACATAAGAGGATTCGTTGTATTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTCAGTTGCAGGAGATGGAGTTGCCATACAACCACGGGCTGAGGAACAAAGGTTTATGTCTTGTACCCATCTCTTGTACTGCAGGAGTTGCACGTAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAACCTCCCCCAAATTTGAGAAGACCATCTCACCATTCAATTGA 537 45.62 MIASSLCNASAKFPAEVVEVETMMEQKRNLCSVDESSLTSLTSKRRKADFSISSKEKKDKLGERIMALQQLVSPFGKTDTASVLLEAMEYIQFLHEQVKPMVENIRGFVVLSAPYLQSTPTVQLQEMELPYNHGLRNKGLCLVPISCTAGVARSNGADIWAPVKTTSPKFEKTISPFN 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11584546 11588341 - CmoCh06G016750.1 Cmo06g01675 385237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01675 178 Gene3D - 42 108 IPR036638 GO:0046983
Cmo06g01675 178 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
Cmo06g01675 178 CDD bHLH_AtbHLH_like 51 99 IPR045239 -
Cmo06g01675 178 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 162 - -
Cmo06g01675 178 PANTHER TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1 17 162 - -
Cmo06g01675 178 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 104 IPR036638 GO:0046983
Cmo06g01675 178 SMART finulus 53 100 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01675 Cmo14g01474 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01675 Cmo-Chr6:11584546 Cmo11g00633 Cmo-Chr11:3033212 5.47E-29 dispersed
Cmo14g01474 Cmo-Chr14:11917002 Cmo06g01675 Cmo-Chr6:11584546 4.89E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01675 - - cmax:111470730 319.316