Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01677 ATGACTTCTTCAATTCTCCTCCACTCCGAATTCAGGCCCCAAATGGTGATCCCTATGGCCCTCGATTTCCTCCTCCCTTCCTGGTTGGAAATCAAGATCACACTCGCCACTTCCCTTTTCGTGATCTTCGCTTACTGGTTTTTCGCCTACCGGAGCTCCTTGTTTGATGGTGATCCTTCTGTTCTTGACAATTCTGGGGATTCTATTGACGCCAAGGACAAGATTCCTCCTGGCCATTTGAGAGACCTTCAGACTAATTCTGCTTATCTAATTAAGTTGGAATTGTTGGCTGCCAAGAATCTTATTGCTGCAAACTTAAATGGCACTTCTGATCCTTATGCTATTATTACCTGTGGTACAGAAAAGCGCTTCAGTTCAATGATTCCTGGTTCAAGGAATCCCATGTGGGGGGAGGAGTTCGATTTTTCCGTCGATGAGCTTCCTGCCCAGATTAATGTTACAATTTATGATTGGGATATAGTTTGGAAAAGTGCTGTTCTTGGTTCAGTTACTGTTACGGTTGAAAGTGAAGGCCACACAGGTGCTGTATGGTACACATTAGATAGCACTTCCGGGCAGGTCTGTCTCCACATTAAAACTTTAAAATTGCAAGGCAATGGCGGAAGCGCAATTAATGGTTATGCTGGAGCAAATGCTCGAAGAAGAATTTCTTTAGACAAACCAGAGCTGACAGTGGTTCATCAAAAGCCAGGGCCTCTTCAGACAATCTTTGAGCTTCTACCTGATGAGGTAGTCGAGCATAGTTTTTCGTGTGCTCTTGAGAGATCATTCTTGTATCACGGTCGTATGTATGTCTCAGCTTGGCACATCTGCTTCCACTCTAACATCTTCTCCAAGCAAATGAAGGTGATAATACCACTAGAAGACATTGATGAAGTACGAAGGACTCAACATGCATTTATCAATCCTGCTGTAACAATTATTCTTCGCATGGGTGCTGGTGGGCATGGTGTACCTCCGTTGGGAAGTCCTGATGGTAGAGTCAGATATAAATTTGCATCATTTTGGAATAGGAACCATACAGTTAGAGCTTTACAGCGTGCAGTGAAGAACTTCCGTGAAACGCTGGAAGCTGAGAAGAAGGAGAAGGCTGAGTCAGCACTACGCGCACATAGTAGCTCGGTGAGAGTTAGTGAAAGTACGGAGAAAATCGCCGCGGATAATTTGCCGAAAAATAAAAATACTCAGGCTTTCATTAAAGAGGAGGTCCTTACTAGCATACACAACGGTGTTTTCCCATGCACTCCCGAGCAGTTCTTTACTATTTTGTTGAGTGATGGATCAAATTACACAAGTGCTTTTGTTGCAAGACGAAAAGATACAAATCTAGTTATGGGACAATGGCATGCCGCAGATGAATATGAAGGTCAAGTTAGAGAGCTTACATATAGATCCCTGTGTCATAGCCCCATGTGTCCACCAGACACAGCGATGACAGAGTATCAACATGCAGTTTTATCTGAAGATAAGACTAAGCTGGTGTTTGAGATGGTGCAAAACGCGCATGATGTGCCGTTTGGGGCGTACTTTGAGCTCCATTGTAGGTGGTCGTTGGAGACAAATGCTGAGAACTCTTCTTCCATTGAGATTAAAGCAGGTGTGCATTTTAAGAAATGGTGTCTGATGCAATCGAAAATAAAGGCTGGCGCAATGCTTGAGTACAAGCGAGCGGTGGAGCTGAGGTTAGAGGTCGCCCTCGAATATACGAAGTCAAATGCTCCTGGCAGCGAAAATGACAAAATTGCACCTCCTCCACCACCAGCTCAGAGCACTTGA 1797 44.35 MTSSILLHSEFRPQMVIPMALDFLLPSWLEIKITLATSLFVIFAYWFFAYRSSLFDGDPSVLDNSGDSIDAKDKIPPGHLRDLQTNSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGTEKRFSSMIPGSRNPMWGEEFDFSVDELPAQINVTIYDWDIVWKSAVLGSVTVTVESEGHTGAVWYTLDSTSGQVCLHIKTLKLQGNGGSAINGYAGANARRRISLDKPELTVVHQKPGPLQTIFELLPDEVVEHSFSCALERSFLYHGRMYVSAWHICFHSNIFSKQMKVIIPLEDIDEVRRTQHAFINPAVTIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHTVRALQRAVKNFRETLEAEKKEKAESALRAHSSSVRVSESTEKIAADNLPKNKNTQAFIKEEVLTSIHNGVFPCTPEQFFTILLSDGSNYTSAFVARRKDTNLVMGQWHAADEYEGQVRELTYRSLCHSPMCPPDTAMTEYQHAVLSEDKTKLVFEMVQNAHDVPFGAYFELHCRWSLETNAENSSSIEIKAGVHFKKWCLMQSKIKAGAMLEYKRAVELRLEVALEYTKSNAPGSENDKIAPPPPPAQST 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11592268 11600588 - CmoCh06G016770.1 Cmo06g01677 385239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01677 598 Gene3D C2 domain 79 201 IPR035892 -
Cmo06g01677 598 SMART gram2001c 238 304 IPR004182 -
Cmo06g01677 598 CDD PH-GRAM_C2-GRAM 249 357 - -
Cmo06g01677 598 Pfam GRAM domain 241 305 IPR004182 -
Cmo06g01677 598 CDD C2 91 187 - -
Cmo06g01677 598 MobiDBLite consensus disorder prediction 578 598 - -
Cmo06g01677 598 PRINTS C2 domain signature 106 118 IPR000008 -
Cmo06g01677 598 PRINTS C2 domain signature 130 143 IPR000008 -
Cmo06g01677 598 PRINTS C2 domain signature 151 159 IPR000008 -
Cmo06g01677 598 ProSiteProfiles VASt domain profile. 407 580 IPR031968 -
Cmo06g01677 598 Gene3D - 239 358 IPR011993 -
Cmo06g01677 598 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 87 204 IPR035892 -
Cmo06g01677 598 SMART C2_3c 90 186 IPR000008 -
Cmo06g01677 598 Pfam C2 domain 92 187 IPR000008 -
Cmo06g01677 598 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 19 590 IPR044655 -
Cmo06g01677 598 ProSiteProfiles C2 domain profile. 72 187 IPR000008 -
Cmo06g01677 598 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 19 590 - -
Cmo06g01677 598 Coils Coil 349 369 - -
Cmo06g01677 598 Pfam VAD1 Analog of StAR-related lipid transfer domain 416 558 IPR031968 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01677 - - - bhj:120082742 1047.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01677 Cmo-Chr6:11592268 Cmo13g00359 Cmo-Chr13:4607196 9.91E-12 dispersed
Cmo06g00967 Cmo-Chr6:7564741 Cmo06g01677 Cmo-Chr6:11592268 3.44E-21 transposed
Cmo14g01473 Cmo-Chr14:11907024 Cmo06g01677 Cmo-Chr6:11592268 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1323 . . . . . Bpe14g00790 . . . . . . Car06g01428 Car14g01266 . . . Bhi01g03681 . . . . . . . . . . . . . Cone14ag0618 Cone15ag0625 . Cone11ag0673 . . . . . . . Bda13g00539 . . . . . Cmo06g01677 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003689 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 0 7 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01677 Cmo_Chr06 FPKM 1.262626 1.393479 2.617749 3.095488 1.335537 1.347816 1.527704 1.372348 1.134595 2.341629