Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01695 ATGGAAAACCCCTTTTCGTCCAAGGAGGAAGGGATGATGGGGTATTGGGGACCTTCCAGAACTCAGGCCGAAACTATGAATTCCACTGACGCTGGAATGAGGATTTTGAGTCCTGAAGATGTCCTCCCCACCTTCTCTGACATGATGAATTTTGATTCTTATGCGGCAATCGATCAGATTTTCACATCTTGTGGGTTTTCATCGATGCCCCAAATGAGTACTTGCGGTTCTATCGAGGGCTTGTCTTTTGTTGAAGGGGGGTGCCATGAAGGATTCCCTCTGAATGAACATGGTGGAGCTTCCATTTCCATGGCGAATTCTTTTACTTGTGGGGACAAGGTGATGTTTCAGCTGCCAGACACTGAATTTGGGGTGTCTAGTATTTCGGACAACGCAAACAAAGTAGATTCTAAATCAAATGATGTCCCTGTAGACATGGATAGCTGTCTGATCTCTAGGCCGTTTGGTTGGTCACTTGATGAGAAAATGCTGAGGGTTTTATCCATGTTTAAAGAGTCCTCACCTGGAGGTATTTTGGCTCAAGTCTGGGTTCCTGTGAAGCATGGAGACCAATTCTTCTTGAGCACCAGCGAGCAGCCATATTTGCTTGATCAAATGCTCACAGGGTACCGTGAAGTGTCGAGGTCGTTTAGATTCTCAGCAGAAGGAAAACTGGGTTCTCTCCTTGGGCTTCCTGGTCGTGTTTTCACCTCCAAACTCCCAGAATGGACATCAAATGTTAGATATTACAGTGACCACGAGTATCTGAGAATGCAACATGCAATCGGCCATGATGTTTATGGATCGATTGCCTTACCGGTATTCAATAACGAAGTCGAAAAATCATGCTGTGCCGTACTTGAAGTTGTTACTACAAAGGAGAAGCCCAATTTTGATGCAGAAATCGACATTGTTTCCCAAGCACTAGAGACTGTTAGCTTGAGCACTGTTCCGCCTCCTCGACTATATTCGCAGTGCTTGAAGAAGAACCAGAGAGCTGCATTGGCGGAGATAGTGGACGTGCTACGTGCTGTATGTCATGCACATAGACTACCTCTTGCCCTAACCTGGATTCCTTGTTGTTATTCTTTTGACGCCGTTGATGAGGTTGCAAGAGTTCGTGTTAAGGAGAACAACATTAACCCAGAGGAGAAATTTGTATTATGTATCGAGGAAACAGCATGTTATGTGAATGACAAATCAACTCAAGGATTTGTGCATGCATGTCTGGAGCATCATCTTGAAGAAGGGCAAGGGATAGCTGGGAAAGCTCTTCAATCTAATCATCCCTTCTTTTATCCTGACGTGAAGGCATATGATATTAATAAATATCCGCTGGTCCATCACGCACGCAAGTTCGGTTTGAATGCTGCGGTTGCAATCAGGCTGAGAAGCATGTACACTGGCAACGATGATTATATACTCGAATTCTTTCTACCTGTCAATATGAAAGGAGCTGCAGAACAACAACTATTGTTAAACAATCTCTCTGTTACCATGCAAAGAATGTGCAGGAGTTTGAGGACAGTTTCAAAGGAAGAATTAATAGGGGCTGAGGATTCTGTTGTTGACTTTCAGAGTGGATTTACATCAATGAGAAACTCGCAATCCACGGTAACAGACAGTGAAACAAGGGTGTCTAACTCGATAAATAATGGAGCTGAAGCAGAATGTCCTGAGAAGCAGATGACTGATGGATCACGGAAGCAGGGCGAGAAAAAACGTAGCACATCCGAAAAAAACGTGAGCTTGAGTGTTCTACAGCAATATTTTTCTGGGAGTCTCAAGGATGCAGCAAAGAGCATTGGTGAACTCAATGCACAAAATAGTCTTCTCTTCTCTGATAATAACCCAGCTATACCAAACCTTGACCCGTTCCTTCATGACGTAAATTCGGTTCCTTCTGCCCCTTTCAATACTCAGAATTCTGCCATCAAACTGGAAATGGACGAGTCTTCCGTTTCTATATCCCAAAGAACGTCATCGAGGAGTGTTCTCATTCCAGAGAAGGAACCGAACGTTCGCCATCGTGATTGTAGTGAAGGCTTGGAGGCCGCTGGTGTAGATGCTGCATCATGCCAGCTTGCTGATCTGGATATGGTGGGTTGGGATGTCCAAGGGAATGCCTCAGCTTCTATTGCTGCTAAAAAAAGTGACAGATTGGATTTTGTGAAGAACGATTTGAGGTCAGGAGATGCCGACTGCCAATTTATGGCCAAGAGCTCGATCTCTTTTGCAGCTGCTGATGAAGTCGGTACCGTGTTGAATGAACATTACCAGCCAACTACTTCGAGCATGACCGACTCATCAAATGGCTCTGGCTTAATGATTCATGGCAGTTCATCTAGCAGTCAGAGCGTCGAGAGGAAGCATTTGCCAGAAAAAGTTGGCTCGGTTGACAGCGAGTCCAAGATTATTGTAAAAGCTTCATACAAAGACGACACAGTTCGATTCAAGTTCGATCCTTGTTTAGGATATCTCCAGCTCTACGAAGAAGTTGGCACGCGATTCAAGCTAAACCAAGGAACATTTCAACTCAAATACCTAGACGATGAAAAAGAATGGGTGATGCTAGTAAGCAATTCAGACTTACAGGAATGTCTCGAGGTGATGGACGAAATCGGCACGAGAAATGTGAAGTTCCTCGTCCGTGATATCGCGTGTGCCGTGGGCAGTTCAGAGGTTACCGAGGAAGAAATTGAGGTCTCCGATGAGGATTTGGAGTTTGTCAAGGAGAACCAGGACTATGCCGTCTCCGTTACTCGTCTAGACACTAAATCCATTACCAAGCATGTTACACGTGTTGCTAATGTTGAAGAAGATGCTTTGGAGGTTTTATACGAGAAGCGTCTGCGCAAGAAGCCACTGCCGAAACTGGAGGAGGAAAATAAGACCCAGGTTGATCGTGTGGATGCTCTTCCTGTCAAAACACTTGAGGGGGAACTTTACTACCGGACATCAAAAACATCTGATGCACCTGAAGATGGTGGGAACGAAGAGGCAATGGAAGAGGACAGGGTAGATAATGGTGTATTGAAGTTAACTAAAGCAGAAAGGAGGGCAAAGCTAAAGAAAACTAAAAAGGTTGCCAAGAAACAAGAGGATGTAACCAAAGCTGAAGAAGTTAAACCAACCCCACAAGCAGCAGTTTTGGCGGAAGTGGTAGAAGATCTTACTGCTGAAAAGACATTTGAAAGTAAGAAGCAGAAACTTGCGGAGCTTGGAATTGCGTTGCTGGCAGACCCAAATTCCAATATTAAATCTCTGAAGGACATGCTACAGATTGTTAAGGATAATGATCAAGCAATTGGATACCTGCAGAAGCTGATGTCATTAGAGAAATCTACAGCATTTCAGCATATTGTTATTCGCTGTATCTGTACGTTGCTTGATGCAGTTCCCCACTTCAATTTTCGAGAGACATTGTTAGGCATTGTTGTTCAAAATATAAGCTCCCCTGATGATGTTGTAAGAAAACTCTGTAGTGGTGCTATTAAGTCTTTATTTATCAATGAGGGAAAGCATGGTGGAGAGGCGACTGTGGAGGCTGTCCGGTTGATTGCTGATCATGTGAAATTTCATGACTGCCAATTGCATCCTGATTCCATCCAGGTTGCTGCGGATTACAGGGCTGCTTCTCTTGCTCCAGATGTGATGAAGCAAAGAGAGATGCAGTCAGATACACTTCGTGCTGTATTTGAAACATATTTCCGAATCTTAAGGCATACAATGCAGTCATTAAAGGCTAGGCCTGAAGCAAGTATTACTGCATCTACGACTAGCCCATCTGGATCCCATCCTCTGCTTGCTCCATGTTTGAATGGGTTGGGGAAATTTTCTCATCTGATCGATTTAGATTTCATGGGAGATCTTATGAATTATCTAAAAAGGCTTGCTTCTGGTGATGATAAATCTTCTGAGAAACAGTCGCAATGTTTGACCGTTTCTGAGCGGCTTCAGTGTTGCATCGTGGCATTTAAAGTAATGAGGAAAAACCTTGATGCTTTGAATGTTGATCTTCAGGACTTTTTTGTCCAGCTGTACAATATTGTACTCGAGTACAGGCCTGGAAGAGATCATGGTGGATTGTTAGCTGAAGCTTTGAAGATAATGTTGTGCGATGATAGACAGCATGACATGCAAAAGGCAGCTGCATTCATTAAGCGTTTGGCTACTTTCTCATTATGCTTTGGATCTGCAGAGTCGATGGCAGCCTTGGTCACCGTAAGGCATCTTCTTCTGAAAAATGTCAAGTGCCGCAACCTTTTGGAAAACGATGCTGGGGGAGGTTCAGTGTCTGGCTCAATAGCGAAATATCAACCATATGCTTCTGATCCAACATTGAGTGGCGCTCTTGCTTCTATCCTTTGGGAACTTAATCTTCTGTGGAAGCATTATCATCCAACTATCTCAACGATGGCAGCGAGCATATCAAGCATGAACAATGCTCAAAACCAAGTTTATATCTCCACTGTTTCTCCCCAACAGGCATTCAAAGACTTGTCGCTGGAACAAGAGTCTTTCAACCCACAGTTTAATGTACGAAAAGTTAACAAGAAAAAAAGAGGCAGGGAATCATCCGAGCCTACTCTCGATACTTGCAGCGCAATCGACGAAAATGAAGTGAAAGAGAAACTTTCAACAAGATTCTTTCTTCTCCGGGACATCAAGGAGAATGAAAGGTTGAGAGCTGAATTGGAGCGTACCACTTTGTCTTTGCAGCTATACGAAGAATACAAAAGGCAAAAGAGAAAAACCAGAAAGTCCAAGAATGTTTAA 4779 43.73 MENPFSSKEEGMMGYWGPSRTQAETMNSTDAGMRILSPEDVLPTFSDMMNFDSYAAIDQIFTSCGFSSMPQMSTCGSIEGLSFVEGGCHEGFPLNEHGGASISMANSFTCGDKVMFQLPDTEFGVSSISDNANKVDSKSNDVPVDMDSCLISRPFGWSLDEKMLRVLSMFKESSPGGILAQVWVPVKHGDQFFLSTSEQPYLLDQMLTGYREVSRSFRFSAEGKLGSLLGLPGRVFTSKLPEWTSNVRYYSDHEYLRMQHAIGHDVYGSIALPVFNNEVEKSCCAVLEVVTTKEKPNFDAEIDIVSQALETVSLSTVPPPRLYSQCLKKNQRAALAEIVDVLRAVCHAHRLPLALTWIPCCYSFDAVDEVARVRVKENNINPEEKFVLCIEETACYVNDKSTQGFVHACLEHHLEEGQGIAGKALQSNHPFFYPDVKAYDINKYPLVHHARKFGLNAAVAIRLRSMYTGNDDYILEFFLPVNMKGAAEQQLLLNNLSVTMQRMCRSLRTVSKEELIGAEDSVVDFQSGFTSMRNSQSTVTDSETRVSNSINNGAEAECPEKQMTDGSRKQGEKKRSTSEKNVSLSVLQQYFSGSLKDAAKSIGELNAQNSLLFSDNNPAIPNLDPFLHDVNSVPSAPFNTQNSAIKLEMDESSVSISQRTSSRSVLIPEKEPNVRHRDCSEGLEAAGVDAASCQLADLDMVGWDVQGNASASIAAKKSDRLDFVKNDLRSGDADCQFMAKSSISFAAADEVGTVLNEHYQPTTSSMTDSSNGSGLMIHGSSSSSQSVERKHLPEKVGSVDSESKIIVKASYKDDTVRFKFDPCLGYLQLYEEVGTRFKLNQGTFQLKYLDDEKEWVMLVSNSDLQECLEVMDEIGTRNVKFLVRDIACAVGSSEVTEEEIEVSDEDLEFVKENQDYAVSVTRLDTKSITKHVTRVANVEEDALEVLYEKRLRKKPLPKLEEENKTQVDRVDALPVKTLEGELYYRTSKTSDAPEDGGNEEAMEEDRVDNGVLKLTKAERRAKLKKTKKVAKKQEDVTKAEEVKPTPQAAVLAEVVEDLTAEKTFESKKQKLAELGIALLADPNSNIKSLKDMLQIVKDNDQAIGYLQKLMSLEKSTAFQHIVIRCICTLLDAVPHFNFRETLLGIVVQNISSPDDVVRKLCSGAIKSLFINEGKHGGEATVEAVRLIADHVKFHDCQLHPDSIQVAADYRAASLAPDVMKQREMQSDTLRAVFETYFRILRHTMQSLKARPEASITASTTSPSGSHPLLAPCLNGLGKFSHLIDLDFMGDLMNYLKRLASGDDKSSEKQSQCLTVSERLQCCIVAFKVMRKNLDALNVDLQDFFVQLYNIVLEYRPGRDHGGLLAEALKIMLCDDRQHDMQKAAAFIKRLATFSLCFGSAESMAALVTVRHLLLKNVKCRNLLENDAGGGSVSGSIAKYQPYASDPTLSGALASILWELNLLWKHYHPTISTMAASISSMNNAQNQVYISTVSPQQAFKDLSLEQESFNPQFNVRKVNKKKRGRESSEPTLDTCSAIDENEVKEKLSTRFFLLRDIKENERLRAELERTTLSLQLYEEYKRQKRKTRKSKNV 1592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11666457 11679861 - CmoCh06G016950.1 Cmo06g01695 385257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01695 1592 PANTHER PROTEIN NLP8 607 893 IPR045012 GO:0003700
Cmo06g01695 1592 SMART PB1_new 804 886 IPR000270 GO:0005515
Cmo06g01695 1592 ProSiteProfiles PB1 domain profile. 804 886 IPR000270 GO:0005515
Cmo06g01695 1592 MobiDBLite consensus disorder prediction 762 787 - -
Cmo06g01695 1592 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 607 893 - -
Cmo06g01695 1592 MobiDBLite consensus disorder prediction 762 788 - -
Cmo06g01695 1592 SUPERFAMILY ARM repeat 1067 1360 IPR016024 -
Cmo06g01695 1592 Coils Coil 1559 1579 - -
Cmo06g01695 1592 SUPERFAMILY CAD & PB1 domains 799 887 - -
Cmo06g01695 1592 Pfam CBF/Mak21 family 1319 1474 IPR005612 -
Cmo06g01695 1592 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 6 603 - -
Cmo06g01695 1592 MobiDBLite consensus disorder prediction 561 579 - -
Cmo06g01695 1592 MobiDBLite consensus disorder prediction 533 555 - -
Cmo06g01695 1592 Pfam PB1 domain 807 884 IPR000270 GO:0005515
Cmo06g01695 1592 Gene3D - 800 886 - -
Cmo06g01695 1592 PANTHER PROTEIN NLP8 6 603 IPR045012 GO:0003700
Cmo06g01695 1592 MobiDBLite consensus disorder prediction 533 580 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01695 Cmo-Chr6:11666457 Cmo16g00577 Cmo-Chr16:2791791 1.90E-19 dispersed
Cmo11g02062 Cmo-Chr11:13960022 Cmo06g01695 Cmo-Chr6:11666457 1.59E-08 transposed
Cmo19g01127 Cmo-Chr19:9556953 Cmo06g01695 Cmo-Chr6:11666457 3.39E-94 transposed
Cmo19g01128 Cmo-Chr19:9558651 Cmo06g01695 Cmo-Chr6:11666457 5.06E-12 transposed
Cmo14g01455 Cmo-Chr14:11819350 Cmo06g01695 Cmo-Chr6:11666457 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01695 - - csv:101222520 1324.3