Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo06g01740 | ATGGCAGGAGAAACTCCCGATGGAAACTCCGGCAATCCGCCGTTGGAGCTCGATTCCCCCACCACCTCCGCTGGTTTCGAAACAGACCAGCTCCCTCATCTCAGCCACATTTCCGACAACTACCCCGACGAGGACGAAGCCGCCGTTGATCCTCACATCGTTCACGACGAGCCTGATCCCGATGAAGAAGAGGAAGGAGAGGATCTCTACCACGATAATTTCCTGGACGATTATCGGAGGATGGACGACCATGACCAGTACGAGTCCTTGGGCCTCGACGATTCTTTAGAGGACGATAGGGATTTGGATCAGATTATGGAGGACAGACGAGCTGCTGAGATGGAACTCGAGACTCGTGATGCTCAGTTCACCCGTCGGAAGCTTCCTGAGCTATTACACGACCATGACTCTGAGGATGACAATTACAGGCCTTCGAAAAGATCAAGAGCTGATTTTCGTCCTCCAGCTGCAGCAAGAAGCTACGATGACATTGATGGCATGCAAAGTTCTACAGGTAGATCACAAAGGGAAAACTCACGAGATGATGTGCCCATGACTGATCATTCTGTTGATGACCAATATGAGGATGAAGATGATGATGAAAATGAGAATGAGATGTATCGTGTTCAAGGGCCACTTAGAGAGCATGTTACTATGGATACAGTTCGGCGCTTTATAGGCAAAAAGTTTAAGAAATTTTTGGAAACATATGTGAATCCTAAGAGTGGAAATGGAGAGCTCGAGTACATGCGACTGATAAATGAGATGGTTTTAGCCAATAGGTGCAGTTTGGAGATTGATTACAAGCAGTTTATCTTTGTTCATCCAAATATTGCAATCTGGTTGGCTGATGCACCCCAATCCGTCTTAGAAGTTATGGAAGATGTTGCAAAGAAGGTTGTGTTTGACATACATCCGAACTACAAAAACATCCACCAAAAGATATATGTTCGCATCAATAATTTACCAGTTTATGATCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGCATTGGTGGCGTAGTGACTCGGCGCTCTGGTGTGTTCCCCCAGTTGCAGCAGGTGAAGTATGATTGTAATAAATGTGGAACAATATTGGGACCATTTTTTCAGAATTCTTACTCAGAGGTCAAGGTTGGTTCTTGTCCTGAATGCCAGTCGAAGGGGCCATTTACAGTAAATGTCGAGCAGACTATATATAGGAACTACCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGTCGACTCCCAAGGTATAAGGAAGTGATACTCTTGAATGATCTAATTGATTGTGCCCGTCCTGGGGAGGAAATTGAAGTCACTGGCATTTATACAAATAATTTTGACTTATCGTTGAATACAAAGAATGGTTTTCCTGTGTTCTCCACGGTTGTTGAAGCAAATTATGTTACCAAGAAGCAAGATCTCTTCTCTGCTTACAAGCTTACCCAGGAAGACAAAGAAGAGATTGAGAAGTTGGCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAATCCATTGCCCCATCAATCTATGGTCACGAGGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACACCGGTTACGAGGTGATATCAATGTACTTTTACTAGGTGATCCTGGCACTGCCAAATCTCAATTTCTCAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCGCAGGGAAAGGAGCTTCAGCTGTAGGACTAACAGCAGCAGTGCACAAGGATCCTGTCACAAGGGAGTGGACCCTTGAAGGTGGTGCCCTTGTATTAGCCGATAGAGGAATTTGTCTGATTGATGAGTTTGACAAAATGAATGATCAGGACAGGGTGAGTATACATGAAGCAATGGAGCAGCAAAGCATTAGCATATCAAAAGCTGGAATTGTCACTTCTCTTCAAGCCAGATGCTCTGTCATTGCAGCTGCCAATCCCGTTGGAGGAAGTGTACACTCATCCCTCACCAAGCGGGAGGAAATGTACGACTCCTCAAAAACATTTTCACAAAATGTGGAGCTGACAGATCCTATCATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTAGACTCTGTAACAGATGAGATGCTTGCTAAGTTTGTTGTTGATAGTCATTTCAAATCACGGCCGAAGGGCGGTAATATTGATGATAAGTCTGTAAATGAATCTCAAGAGGACAGTCAAGACTCTACAAGGCCACTGGATCCGGAGGTGCTTCCCCAAGATCTGCTGAAGAAGTACATAACTTATGCTAAGTTGAATGTGTTTCCAAGGTTGCATGATGCTGATATGGATAAGTTAACACATGTCTACGCAGAATTACGAAGGGAATCTTCTCATGGGCAAGGAGTTCCTATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGGCAGCACGTCACACAAGAAGATGTTGATATGGCAATTCGTGTGTTACTTGATTCTTTCATTTCGACCCAAAAATTTGGGGTACAGAAAGCTCTGCAAAAGAGCTTTAGAAAGTATATGACTTTCAAGAAGGATTACAACGAACTGCTCCTATATCTTCTTCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTATTCGTGGATCTACATCGGAGCTTATCCACATCAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAGGAACATGAAATTTATGATTTGAAACCCTTCTTCACCAGCTCCCACTTTTCAAATGCTAATTTTGTGCTGGATGAAGAGCGTGGAGTAATCAAGCATCACCTTGCCAGATGA | 2868 | 43.38 | MAGETPDGNSGNPPLELDSPTTSAGFETDQLPHLSHISDNYPDEDEAAVDPHIVHDEPDPDEEEEGEDLYHDNFLDDYRRMDDHDQYESLGLDDSLEDDRDLDQIMEDRRAAEMELETRDAQFTRRKLPELLHDHDSEDDNYRPSKRSRADFRPPAAARSYDDIDGMQSSTGRSQRENSRDDVPMTDHSVDDQYEDEDDDENENEMYRVQGPLREHVTMDTVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQSVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTAGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGSVHSSLTKREEMYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVTDEMLAKFVVDSHFKSRPKGGNIDDKSVNESQEDSQDSTRPLDPEVLPQDLLKKYITYAKLNVFPRLHDADMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELIHINVKLEDLQSKAQEHEIYDLKPFFTSSHFSNANFVLDEERGVIKHHLAR | 955 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 11928395 | 11934249 | - | CmoCh06G017400.1 | Cmo06g01740 | 385302 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo06g01740 | 955 | SMART | mcm | 324 | 850 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cmo06g01740 | 955 | ProSitePatterns | MCM family signature. | 616 | 624 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Cmo06g01740 | 955 | MobiDBLite | consensus disorder prediction | 38 | 56 | - | - | |
| Cmo06g01740 | 955 | SUPERFAMILY | Nucleic acid-binding proteins | 229 | 476 | IPR012340 | - | |
| Cmo06g01740 | 955 | MobiDBLite | consensus disorder prediction | 734 | 759 | - | - | |
| Cmo06g01740 | 955 | Pfam | MCM P-loop domain | 495 | 728 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cmo06g01740 | 955 | Pfam | MCM AAA-lid domain | 765 | 849 | IPR041562 | - | |
| Cmo06g01740 | 955 | Gene3D | - | 355 | 405 | - | - | |
| Cmo06g01740 | 955 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 337 | 354 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Cmo06g01740 | 955 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 395 | 409 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Cmo06g01740 | 955 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 456 | 467 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Cmo06g01740 | 955 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 360 | 372 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Cmo06g01740 | 955 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 471 | 482 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Cmo06g01740 | 955 | Gene3D | - | 220 | 324 | - | - | |
| Cmo06g01740 | 955 | Gene3D | - | 328 | 453 | IPR012340 | - | |
| Cmo06g01740 | 955 | MobiDBLite | consensus disorder prediction | 102 | 158 | - | - | |
| Cmo06g01740 | 955 | MobiDBLite | consensus disorder prediction | 175 | 190 | - | - | |
| Cmo06g01740 | 955 | CDD | MCM2 | 510 | 848 | - | - | |
| Cmo06g01740 | 955 | MobiDBLite | consensus disorder prediction | 72 | 93 | - | - | |
| Cmo06g01740 | 955 | Pfam | Mini-chromosome maintenance protein 2 | 44 | 199 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Cmo06g01740 | 955 | MobiDBLite | consensus disorder prediction | 57 | 71 | - | - | |
| Cmo06g01740 | 955 | Pfam | MCM N-terminal domain | 228 | 321 | IPR027925 | - | |
| Cmo06g01740 | 955 | PANTHER | DNA HELICASE | 144 | 949 | - | - | |
| Cmo06g01740 | 955 | MobiDBLite | consensus disorder prediction | 1 | 203 | - | - | |
| Cmo06g01740 | 955 | Gene3D | - | 487 | 872 | IPR027417 | - | |
| Cmo06g01740 | 955 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 517 | 852 | IPR027417 | - | |
| Cmo06g01740 | 955 | MobiDBLite | consensus disorder prediction | 734 | 755 | - | - | |
| Cmo06g01740 | 955 | ProSiteProfiles | MCM family domain profile. | 507 | 724 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cmo06g01740 | 955 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 144 | 949 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cmo06g01740 | 955 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 636 | 649 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cmo06g01740 | 955 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 548 | 563 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cmo06g01740 | 955 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 608 | 622 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cmo06g01740 | 955 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 660 | 672 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cmo06g01740 | 955 | MobiDBLite | consensus disorder prediction | 12 | 35 | - | - | |
| Cmo06g01740 | 955 | Pfam | MCM OB domain | 327 | 454 | IPR033762 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo06g01740 | Cmo-Chr6:11928395 | Cmo12g01194 | Cmo-Chr12:10756150 | 5.94E-97 | dispersed | |
| Cmo19g00482 | Cmo-Chr19:5739138 | Cmo06g01740 | Cmo-Chr6:11928395 | 1.63E-52 | dispersed | |
| Cmo14g01078 | Cmo-Chr14:6029195 | Cmo06g01740 | Cmo-Chr6:11928395 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo06g01740 | K02540 | - | csv:101219546 | 1708.35 |