Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01740 ATGGCAGGAGAAACTCCCGATGGAAACTCCGGCAATCCGCCGTTGGAGCTCGATTCCCCCACCACCTCCGCTGGTTTCGAAACAGACCAGCTCCCTCATCTCAGCCACATTTCCGACAACTACCCCGACGAGGACGAAGCCGCCGTTGATCCTCACATCGTTCACGACGAGCCTGATCCCGATGAAGAAGAGGAAGGAGAGGATCTCTACCACGATAATTTCCTGGACGATTATCGGAGGATGGACGACCATGACCAGTACGAGTCCTTGGGCCTCGACGATTCTTTAGAGGACGATAGGGATTTGGATCAGATTATGGAGGACAGACGAGCTGCTGAGATGGAACTCGAGACTCGTGATGCTCAGTTCACCCGTCGGAAGCTTCCTGAGCTATTACACGACCATGACTCTGAGGATGACAATTACAGGCCTTCGAAAAGATCAAGAGCTGATTTTCGTCCTCCAGCTGCAGCAAGAAGCTACGATGACATTGATGGCATGCAAAGTTCTACAGGTAGATCACAAAGGGAAAACTCACGAGATGATGTGCCCATGACTGATCATTCTGTTGATGACCAATATGAGGATGAAGATGATGATGAAAATGAGAATGAGATGTATCGTGTTCAAGGGCCACTTAGAGAGCATGTTACTATGGATACAGTTCGGCGCTTTATAGGCAAAAAGTTTAAGAAATTTTTGGAAACATATGTGAATCCTAAGAGTGGAAATGGAGAGCTCGAGTACATGCGACTGATAAATGAGATGGTTTTAGCCAATAGGTGCAGTTTGGAGATTGATTACAAGCAGTTTATCTTTGTTCATCCAAATATTGCAATCTGGTTGGCTGATGCACCCCAATCCGTCTTAGAAGTTATGGAAGATGTTGCAAAGAAGGTTGTGTTTGACATACATCCGAACTACAAAAACATCCACCAAAAGATATATGTTCGCATCAATAATTTACCAGTTTATGATCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGCATTGGTGGCGTAGTGACTCGGCGCTCTGGTGTGTTCCCCCAGTTGCAGCAGGTGAAGTATGATTGTAATAAATGTGGAACAATATTGGGACCATTTTTTCAGAATTCTTACTCAGAGGTCAAGGTTGGTTCTTGTCCTGAATGCCAGTCGAAGGGGCCATTTACAGTAAATGTCGAGCAGACTATATATAGGAACTACCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGTCGACTCCCAAGGTATAAGGAAGTGATACTCTTGAATGATCTAATTGATTGTGCCCGTCCTGGGGAGGAAATTGAAGTCACTGGCATTTATACAAATAATTTTGACTTATCGTTGAATACAAAGAATGGTTTTCCTGTGTTCTCCACGGTTGTTGAAGCAAATTATGTTACCAAGAAGCAAGATCTCTTCTCTGCTTACAAGCTTACCCAGGAAGACAAAGAAGAGATTGAGAAGTTGGCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAATCCATTGCCCCATCAATCTATGGTCACGAGGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACACCGGTTACGAGGTGATATCAATGTACTTTTACTAGGTGATCCTGGCACTGCCAAATCTCAATTTCTCAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCGCAGGGAAAGGAGCTTCAGCTGTAGGACTAACAGCAGCAGTGCACAAGGATCCTGTCACAAGGGAGTGGACCCTTGAAGGTGGTGCCCTTGTATTAGCCGATAGAGGAATTTGTCTGATTGATGAGTTTGACAAAATGAATGATCAGGACAGGGTGAGTATACATGAAGCAATGGAGCAGCAAAGCATTAGCATATCAAAAGCTGGAATTGTCACTTCTCTTCAAGCCAGATGCTCTGTCATTGCAGCTGCCAATCCCGTTGGAGGAAGTGTACACTCATCCCTCACCAAGCGGGAGGAAATGTACGACTCCTCAAAAACATTTTCACAAAATGTGGAGCTGACAGATCCTATCATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTAGACTCTGTAACAGATGAGATGCTTGCTAAGTTTGTTGTTGATAGTCATTTCAAATCACGGCCGAAGGGCGGTAATATTGATGATAAGTCTGTAAATGAATCTCAAGAGGACAGTCAAGACTCTACAAGGCCACTGGATCCGGAGGTGCTTCCCCAAGATCTGCTGAAGAAGTACATAACTTATGCTAAGTTGAATGTGTTTCCAAGGTTGCATGATGCTGATATGGATAAGTTAACACATGTCTACGCAGAATTACGAAGGGAATCTTCTCATGGGCAAGGAGTTCCTATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGGCAGCACGTCACACAAGAAGATGTTGATATGGCAATTCGTGTGTTACTTGATTCTTTCATTTCGACCCAAAAATTTGGGGTACAGAAAGCTCTGCAAAAGAGCTTTAGAAAGTATATGACTTTCAAGAAGGATTACAACGAACTGCTCCTATATCTTCTTCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTATTCGTGGATCTACATCGGAGCTTATCCACATCAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAGGAACATGAAATTTATGATTTGAAACCCTTCTTCACCAGCTCCCACTTTTCAAATGCTAATTTTGTGCTGGATGAAGAGCGTGGAGTAATCAAGCATCACCTTGCCAGATGA 2868 43.38 MAGETPDGNSGNPPLELDSPTTSAGFETDQLPHLSHISDNYPDEDEAAVDPHIVHDEPDPDEEEEGEDLYHDNFLDDYRRMDDHDQYESLGLDDSLEDDRDLDQIMEDRRAAEMELETRDAQFTRRKLPELLHDHDSEDDNYRPSKRSRADFRPPAAARSYDDIDGMQSSTGRSQRENSRDDVPMTDHSVDDQYEDEDDDENENEMYRVQGPLREHVTMDTVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQSVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTAGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGSVHSSLTKREEMYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVTDEMLAKFVVDSHFKSRPKGGNIDDKSVNESQEDSQDSTRPLDPEVLPQDLLKKYITYAKLNVFPRLHDADMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELIHINVKLEDLQSKAQEHEIYDLKPFFTSSHFSNANFVLDEERGVIKHHLAR 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11928395 11934249 - CmoCh06G017400.1 Cmo06g01740 385302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01740 955 SMART mcm 324 850 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo06g01740 955 ProSitePatterns MCM family signature. 616 624 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cmo06g01740 955 MobiDBLite consensus disorder prediction 38 56 - -
Cmo06g01740 955 SUPERFAMILY Nucleic acid-binding proteins 229 476 IPR012340 -
Cmo06g01740 955 MobiDBLite consensus disorder prediction 734 759 - -
Cmo06g01740 955 Pfam MCM P-loop domain 495 728 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo06g01740 955 Pfam MCM AAA-lid domain 765 849 IPR041562 -
Cmo06g01740 955 Gene3D - 355 405 - -
Cmo06g01740 955 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 337 354 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cmo06g01740 955 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 395 409 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cmo06g01740 955 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 456 467 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cmo06g01740 955 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 360 372 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cmo06g01740 955 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 471 482 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cmo06g01740 955 Gene3D - 220 324 - -
Cmo06g01740 955 Gene3D - 328 453 IPR012340 -
Cmo06g01740 955 MobiDBLite consensus disorder prediction 102 158 - -
Cmo06g01740 955 MobiDBLite consensus disorder prediction 175 190 - -
Cmo06g01740 955 CDD MCM2 510 848 - -
Cmo06g01740 955 MobiDBLite consensus disorder prediction 72 93 - -
Cmo06g01740 955 Pfam Mini-chromosome maintenance protein 2 44 199 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cmo06g01740 955 MobiDBLite consensus disorder prediction 57 71 - -
Cmo06g01740 955 Pfam MCM N-terminal domain 228 321 IPR027925 -
Cmo06g01740 955 PANTHER DNA HELICASE 144 949 - -
Cmo06g01740 955 MobiDBLite consensus disorder prediction 1 203 - -
Cmo06g01740 955 Gene3D - 487 872 IPR027417 -
Cmo06g01740 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 852 IPR027417 -
Cmo06g01740 955 MobiDBLite consensus disorder prediction 734 755 - -
Cmo06g01740 955 ProSiteProfiles MCM family domain profile. 507 724 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo06g01740 955 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 144 949 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo06g01740 955 PRINTS Mini-chromosome maintenance (MCM) protein family signature 636 649 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo06g01740 955 PRINTS Mini-chromosome maintenance (MCM) protein family signature 548 563 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo06g01740 955 PRINTS Mini-chromosome maintenance (MCM) protein family signature 608 622 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo06g01740 955 PRINTS Mini-chromosome maintenance (MCM) protein family signature 660 672 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo06g01740 955 MobiDBLite consensus disorder prediction 12 35 - -
Cmo06g01740 955 Pfam MCM OB domain 327 454 IPR033762 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01740 K02540 MCM2; DNA replication licensing factor MCM2 [EC:5.6.2.3] - csv:101219546 1708.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01740 Cmo-Chr6:11928395 Cmo12g01194 Cmo-Chr12:10756150 5.94E-97 dispersed
Cmo19g00482 Cmo-Chr19:5739138 Cmo06g01740 Cmo-Chr6:11928395 1.63E-52 dispersed
Cmo14g01078 Cmo-Chr14:6029195 Cmo06g01740 Cmo-Chr6:11928395 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo09g01339 . 106 797 Core DNA Replication Machinery Family AT4G14700 66.9 2.2e-270 929.1
Cmo09g01339 . 73 797 Core DNA Replication Machinery Family AT4G12620 67.4 2.5e-282 968.8
Cmo12g00468 . 2 361 Core DNA Replication Machinery Family AT2G37560 67.5 7.5e-143 504.2
Cmo02g01001 . 21 361 Core DNA Replication Machinery Family AT5G16690 54.4 1.5e-100 364.8
Cmo04g01157 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 1.9e-156 549.7
Cmo17g00416 . 3 520 Core DNA Replication Machinery Family AT4G29910 57.2 1.6e-166 583.6
Cmo05g00872 . 1 183 Core DNA Replication Machinery Family AT1G26840 70.5 3.6e-66 249.2
Cmo06g01695 . 894 1566 Core DNA Replication Machinery Family AT1G79150 50.9 9.1e-195 677.9
Cmo14g01078 . 9 939 Core DNA Replication Machinery Family AT1G44900 75.3 0.0e+00 1339.3
Cmo06g01740 . 1 950 Core DNA Replication Machinery Family AT1G44900 74.2 0.0e+00 1328.2
Cmo07g00117 CST 1 579 Core DNA Replication Machinery Family AT5G46280 80.5 3.0e-266 914.8
Cmo03g01381 CST 1 196 Core DNA Replication Machinery Family AT5G46280 50.6 2.8e-62 237.3
Cmo19g00696 . 1 814 Core DNA Replication Machinery Family AT2G16440 73.5 0.0e+00 1090.1
Cmo11g01110 . 200 882 Core DNA Replication Machinery Family AT2G16440 60.2 2.3e-246 849.4
Cmo12g01194 . 951 1685 Core DNA Replication Machinery Family AT2G07690 78.5 0.0e+00 1115.5
Cmo07g00005 . 528 1322 Core DNA Replication Machinery Family AT5G44635 70.1 0.0e+00 1120.1
Cmo17g01008 . 8 719 Core DNA Replication Machinery Family AT4G02060 85.7 0.0e+00 1220.7
Cmo08g00461 . 11 722 Core DNA Replication Machinery Family AT4G02060 85.5 0.0e+00 1216.4
Cmo20g00379 . 30 518 Core DNA Replication Machinery Family AT2G29680 60.8 6.6e-164 574.7
Cmo20g00379 . 30 479 Core DNA Replication Machinery Family AT1G07270 58.7 7.1e-144 508.1
Cmo08g00224 . 222 814 Core DNA Replication Machinery Family AT3G25100 76.9 8.1e-262 900.2
Cmo17g01242 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.5 2.7e-257 885.2
Cmo06g00348 . 39 872 Core DNA Replication Machinery Family AT3G09660 67.5 3.2e-306 1048.1
Cmo19g00482 . 16 686 Core DNA Replication Machinery Family AT2G14050 64.6 4.4e-245 844.7
Cmo20g00749 . 1 438 Core DNA Replication Machinery Family AT2G20980 50.9 1.9e-110 396.7
Cmo09g00762 . 7 968 Core DNA Replication Machinery Family AT1G77320 50.4 1.3e-259 893.6
Cmo08g00638 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.8 2.3e-75 279.3
Cmo07g01233 . 1 179 Core DNA Replication Machinery Family AT3G12530 58.7 6.7e-56 214.2
Cmo04g03028 . 1 184 Core DNA Replication Machinery Family AT1G19080 64.7 1.1e-63 240.4
Cmo04g03028 . 1 184 Core DNA Replication Machinery Family AT3G55490 64.7 1.1e-63 240.4
Cmo14g02113 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.7 5.8e-52 201.4
Cmo02g00525 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1768.4
Cmo18g00706 . 2 610 Core DNA Replication Machinery Family AT1G67630 63.9 1.6e-220 763.1
Cmo08g00172 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 2.3e-185 646.0
Cmo09g01248 . 1 450 Core DNA Replication Machinery Family AT5G41880 64.6 2.1e-177 619.4
Cmo07g00846 . 1 1086 Core DNA Replication Machinery Family AT5G63960 81.1 0.0e+00 1808.1
Cmo14g00422 . 1 438 Core DNA Replication Machinery Family AT2G42120 76.5 4.2e-207 718.0
Cmo08g00172 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 2.3e-185 646.0
Cmo02g01374 . 1 2094 Core DNA Replication Machinery Family AT1G08260 70.5 0.0e+00 2952.9
Cmo02g01374 . 9 2200 Core DNA Replication Machinery Family AT2G27120 67.4 0.0e+00 2919.8
Cmo01g00788 . 510 1031 Core DNA Replication Machinery Family AT5G22110 65.4 8.1e-191 664.1
Cmo02g01336 . 1 928 Core DNA Replication Machinery Family AT5G22010 62.5 2.2e-303 1038.9
Cmo16g01059 . 3 332 Core DNA Replication Machinery Family AT1G63160 89.7 1.4e-170 596.3
Cmo03g00225 . 1 354 Core DNA Replication Machinery Family AT5G27740 83.3 2.4e-176 615.5
Cmo01g01421 . 1 336 Core DNA Replication Machinery Family AT1G21690 80.1 1.6e-150 529.6
Cmo15g00675 CST 1 363 Core DNA Replication Machinery Family AT1G77470 76.3 7.0e-155 544.3
Cmo04g02487 CST 1 382 Core DNA Replication Machinery Family AT1G77470 70.5 9.2e-147 517.3
Cmo05g01408 . 26 618 Core DNA Replication Machinery Family AT2G06510 69.0 1.2e-252 869.8
Cmo06g00609 CST 34 701 Core DNA Replication Machinery Family AT2G06510 52.1 1.3e-201 700.3
Cmo16g01260 CST 34 686 Core DNA Replication Machinery Family AT2G06510 52.2 5.4e-200 694.9
Cmo11g00212 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.1 1.5e-242 836.3
Cmo06g00609 CST 10 808 Core DNA Replication Machinery Family AT5G45400 51.6 2.4e-230 796.2
Cmo16g01260 CST 10 785 Core DNA Replication Machinery Family AT5G45400 51.4 3.3e-224 775.8
Cmo11g00212 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.0 2.3e-235 812.4
Cmo06g00609 CST 5 822 Core DNA Replication Machinery Family AT4G19130 53.3 7.5e-231 797.7
Cmo16g01260 CST 5 772 Core DNA Replication Machinery Family AT4G19130 54.8 1.3e-227 786.9
Cmo09g00511 CST 1 268 Core DNA Replication Machinery Family AT2G24490 50.2 1.2e-69 260.8
Cmo01g01597 CST 1 167 Core DNA Replication Machinery Family AT2G24490 52.2 3.4e-45 179.5
Cmo11g01256 . 1 172 Core DNA Replication Machinery Family AT5G26680 91.9 4.6e-86 315.8
Cmo11g01257 . 18 183 Core DNA Replication Machinery Family AT5G26680 59.5 5.3e-58 222.6
Cmo14g01511 CST 1 262 Core DNA Replication Machinery Family AT2G25100 66.0 7.0e-99 357.8
Cmo20g00553 . 44 804 Core DNA Replication Machinery Family AT1G08130 68.0 2.9e-291 998.4
Cmo20g00553 . 204 804 Core DNA Replication Machinery Family AT1G49250 68.6 9.6e-240 827.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008086 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01740 Cmo_Chr06 FPKM 6.218605 6.455214 5.543138 5.146026 6.926085 8.467689 8.197232 10.504616 10.592292 8.455216