Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00002 ATGCCATTTATTGAGGCACTTGGACAGTTCTCATACCGTGTAGGTTCTGGTAACTTTTGCCTAATTCATGTCAGCCTTGTGCCTGTATTGAAAGTTGTTGGAGAGCAGAAAACAAAACCTACTCAGCATAGCGTTAGGGGTCTACGAAGTCTAGGCTTGACCCCACATGTTTTGGCTTGTCGCAGCACAACGGTTCTTGATGAAAATGTGAAGAGGAAGCTCTCTCAGTTTTGTCATGTTCCGGTGGACAGCATCATCACTCTCTACGATGTTACTAACATCTGGCATATTCCTTTACTTTTAAAAGATCAAAAGGCACATGAAGCAATCTTGAAAGTGCTGAATCTTCACAGTATAGCTGGTGGCCCTGCTTTAGAGGAGTGGACTGCTAGAGCTGAAATTTGTGATTCGCTGCATGAACCGGTGGGTTCGTATTGCCATGGTTGGAAAGTATACGGGGCTTTCAGATTCCTACCTTTCTGTGCTGAAGTTTACAATATTATAATCAGTGTTCTAAAAGAGTTTTTATGTGCTGAGTTCTCCTGTTTCTTGCTTAATACTGAGCTCGGCAGCTCATATCAAGAAATCTGTGAGAAAATAAAGAGAAGTAAGGAAGTATCTGAAATCATGTTACTGGAGCTGGGTCAACCTAGTTACTGGCGAGCTCTTAAGCATGCCTCCCTCAGATGTCTAAAGAAACTCATTGTGGACTGGGTTCCAGCTGGAGATCTTGAAGATGTTACGGCTCAAGAGAATCCAGCTGCTCATAAGGCTGCTTGGAAGCTTTTGAAGGTATGTATCGGTGCAGATGGCATACTTGTTCCAGGTGGTTTTGGTGATAGAGGAGTGGAAGGGAAAATCCTTGCAGCGAAGTATGCTCGAGAAAACAAAGTTCCTTTCCTCGGCATATGCCTAGGAATGCAAATTGCTGTCATTGAGTTTGCACGATCTGTTCTTAATTTGAAAGATGCTAATAGCACTGAATTTGATACCAGCACAAAGAATCCATGTGTTATATTTATGCCTGAGGTATTTTCTAATGAAGTGTCTAAAACACATATGGGCGGAACCATGCGCCTTGGTTCTAGGAGAACATATTTTCAGGTTATGGATTGCAAGTCCGCAAAACTGTATGGGAATAAAAGTTTCATTGATGAGAGACATAGGCATAGATACGAGGTTAATCCTGATATGGTATCGCGGCTTGAAAAAGACGGACTCTCTTTCACTGGCAAGGACGAAACAGGTCAGCGCATGGAGATTGTTGAGCTGGCTTGTCATCCATACTTCATTGGTGTTCAATTCCATCCCGAATTTAAATCAAGACCGGGAAAACCTTCTGCATTATTCTTGGGACTCATAGCTGCATCATGTGGCCAATTAAGTTCTATCTTAAGAAGCTCTGAGAATCAGAAGAAAACCATGAATAACGGGGGCATTGAAGTCTCAATGACAAAAGTCTCCAGAAATGGTAACATGAAAATGACTGCGAATAGGCTGTCTAATGATGATTGCCTGTACAGTCATCTGAGTTCGGATAGGTATAGGGTAAAGACGCAAAAGAAGAAAATAACCAAACTGAACCATGCCGATTCAGTGAATTGTAAAAAAACCAATCCGAGTCCCTTGTTTGGTTCGCTCGCCTTCACCGATCACCCTATCCTTGCTCTGGCGTTCTCTAGCCACCGCCATCACACCACCACTCTTCCAGCCGGCAGCCACCACCATCAGCTTCCACCGGACACCGTTCTCCAGATATCATTCGTCGTTGCTCCCAGGCCAGCATTCTCTTTAGCCACCTTACCGCTCTCCAGCACACTTCAATACAAAAAGCCAAGAAAAGAATGGGTTGTATTTGATCCTCCACCCTTTGATAACTCGCAGCCCGCTGCAATCACAGAAAAACAGTTTCACTTTTCTTTCAAAGCCCAAAACTTCAAACATTGGCCGAAGCAGACAGAACAAAAGGGAATAGAGATGGCCTTGGATGTTGCTGCTGATGTGCAATGTTGTGCACCCCTATATAATTGTTTCGATCAACCCACTCCCTTGCTCCTGGACTGGAATGCTTCAAATTACTCTTCCCTCTGCTCTTGGACTGGAATTCAATGCGACCACATGAACACATCGCTAGTGTCGCTGGACATTTCCAATTCCAACCTCTCCGGGACCTTCCCCCCTCTAATTCACAACCTAACCAACCTTCGCTTTCTCAACATCTCCAACAATCAGCTCCGCGGACAACTCCACTGGGACTACTCTCAACTCAAACTGCTGCAGGTATTTGATGCTTACAATAACAACTTCAATGGGTCGCTCCCTACGGCCGTCCCTCAACTTCCCAGTTTAAAGCATTTAAATCTTGGCGGAAATTTCTTTAGCGGTGGAATCCCCCGAAGCTATGGTGCGATGGGGAAGCTCACTTACCTGTCGCTTGGCGGCAATGACCTGGGCGGTCCCATTCCCACTGAGCTCGGCAATCTAACCAACCTACAGCGGCTTTATTTGGGATACTTCAATGAGTTTGAGGGTGGAATACCCTCAGAACTCGGAAAGCTTGTGAATTTGAATCATCTCGACCTTGCCAGTTGTAGTTTACGGGGTCCAATCCCACTCGAGTTGGGGAACCTCAACAAGTTAGACACTCTGTTCTTGCAGACAAATCAGCTCACTGGTTCTATTCCTCCTCAGTTGGGCAACTTGAGCAGCTTGGTTTCGCTTGACCTCTCCAACAACGAACTAACTGGAGAGGTCCCCCTTGAATTTGCAAACCTCCGCCAGCTTTTGCTCTTGAACTTATTCATCAACAAGTTTCATGGAGAGATTCCTGAGGCTCTAGCCGATCTTCCCAAGTTGGAGGTTCTGAAGGTGTGGCAAAATAACTTCACTGGAGCCATTCCATCAAAGCTTGGTGAGAATGGGAGACTGACGGAGCTTGACTTGTCCACCAACAAGCTCACAGGACTGGTCCCGGAGCGTCTGTGCTTGGGAGGAAGGCTGAAGATCTTGATTTTACTGAACAATTTTCTGTTTGGGCCTCTGCCACGTGATCTAGGACGATGCCAGACGCTTGTGAGAGTTCGGATGGGCCAGAATTATTTGACGGGGCCAATCCCAGAGGGGCTGCTTTACTTGCCACAGCTCTCCCTCGTGGAATTGCAGAACAACTACCTGAGTGGACCCCTTCCACAAGATATGCGAATGCGTCCACTCCCATCTAAACTCGCCCAGCTAAACCTTGCCAACAATCGCTTTTCTGGATCCCTTCCCACCTCCGTCGGAAACTTCACAAACTTGCAGATTCTGCTTCTGCGTGGAAACCGTTTCTCCGGGGACATTCCTTCTCAAATAGGCAAACTGCGAAATCTTCTCAAGCTAGACATGAACAGCAACAACTTCTCCGGTACAATCCCACCTGAACTGGGTGCTTGTGTCTCCCTCACTTACCTGGATTTGAGCCTTAATCACCTAACCTCTCCAATCCCAGTTCAAATCTCACAGATTCGCATCTTGAATTATCTGAACCTGTCTTGGAACCGTCTGAACCAGAGCCTTCCGAAGGAAATTGGGTCCATAAAGAGCTTGACTTGTGCGGACTTTTCCCACAATGACTTGTCTGGTCCTATTCCCGAAACTGGTCAGTTTCTACTCTTCAATTCCACATCCTTCGAGGGCAACCCTCAACTGTGTGGATCTGCGTTGAATCCCTGCAACGTGTCAACCTCTAAATCTCAAACCTCAACGCCCGCCAATTCCAAAACTGTTGGGAAATATAAGCTTGTGTTTGCTTTGGGACTATTGATGTGTTCAGTAATATTTGCAGCTCTGGCAATTATTCAGACAAGGAAGGCCAAGAAGAAATCAAGTTCGTGGAAGCTAGCAGCATTCCAGAAGCTGGAATTTGGAAGCAAGGACATCATAGAGTGCGTAAAAGAGAACAACATAATTGGAAAAGGTGGAGCTGGAATTGTGTACAAAGGAGTCATGCCAAGTGGAGAACAAGTAGCCATAAAAAAACTGTTGGCCATAAACAAGGGATCCTCCCATGACAACGGTCTGTCGGCGGAGATACAGACGCTGGGCAAAATCCGTCATAGGAACATCGTGAGATTGCTTGCATTTTGCTCCAATAAGCAGACCAATCTGCTGGTTTACGAGTACATGCCCAATGGAAGTTTAGGAGAAGTTCTCCATGAAAAGAGGGGTGGTTGCCTAAAATGGGGAACCAGGCTGAAGATAGCTATAGAAGCGGCCAAAGGGCTTTGCTATTTGCACCATGATTGTTCCCCCCTAATAATTCATAGAGACGTCAAGTCCAACAACATTCTGCTCAACTCAGATTACGAGGCTCATGTAGCGGACTTCGGGTTGGCCAAGTTCTTGCAAGACAACGGAACATCGGAGTGCATGTCTGTCATAGCCGGTTCTTACGGGTATATTGCTCCAGAATATGCATACACGTTAAAAGTGGATGAAAAAAGTGATGTTTATAGTTTCGGTGTAGTGTTGCTGGAGCTTATAACAGGGCGAAAGCCCGTGGGCAATTTTGGGGAAGATGGTTTGGACATCGTCCAATGGACTAAGATCCAAACCAACTCTACTAAAGAAGGAGTTGTTAAGATATTGGATCAAAGGTTGAGTAACATACCTATAGATGAAGCAAAGCAGATGTTTTTTGTTGCTATGTTATGCGTCCAAGAACATAGCGTGGAGCGGCCAACAATGAGAGAAGTGCTTCAAATGCTTGCACAAGCCCACCAACCAAATACCTTCCACATGCATTGA 4785 45.68 MPFIEALGQFSYRVGSGNFCLIHVSLVPVLKVVGEQKTKPTQHSVRGLRSLGLTPHVLACRSTTVLDENVKRKLSQFCHVPVDSIITLYDVTNIWHIPLLLKDQKAHEAILKVLNLHSIAGGPALEEWTARAEICDSLHEPVGSYCHGWKVYGAFRFLPFCAEVYNIIISVLKEFLCAEFSCFLLNTELGSSYQEICEKIKRSKEVSEIMLLELGQPSYWRALKHASLRCLKKLIVDWVPAGDLEDVTAQENPAAHKAAWKLLKVCIGADGILVPGGFGDRGVEGKILAAKYARENKVPFLGICLGMQIAVIEFARSVLNLKDANSTEFDTSTKNPCVIFMPEVFSNEVSKTHMGGTMRLGSRRTYFQVMDCKSAKLYGNKSFIDERHRHRYEVNPDMVSRLEKDGLSFTGKDETGQRMEIVELACHPYFIGVQFHPEFKSRPGKPSALFLGLIAASCGQLSSILRSSENQKKTMNNGGIEVSMTKVSRNGNMKMTANRLSNDDCLYSHLSSDRYRVKTQKKKITKLNHADSVNCKKTNPSPLFGSLAFTDHPILALAFSSHRHHTTTLPAGSHHHQLPPDTVLQISFVVAPRPAFSLATLPLSSTLQYKKPRKEWVVFDPPPFDNSQPAAITEKQFHFSFKAQNFKHWPKQTEQKGIEMALDVAADVQCCAPLYNCFDQPTPLLLDWNASNYSSLCSWTGIQCDHMNTSLVSLDISNSNLSGTFPPLIHNLTNLRFLNISNNQLRGQLHWDYSQLKLLQVFDAYNNNFNGSLPTAVPQLPSLKHLNLGGNFFSGGIPRSYGAMGKLTYLSLGGNDLGGPIPTELGNLTNLQRLYLGYFNEFEGGIPSELGKLVNLNHLDLASCSLRGPIPLELGNLNKLDTLFLQTNQLTGSIPPQLGNLSSLVSLDLSNNELTGEVPLEFANLRQLLLLNLFINKFHGEIPEALADLPKLEVLKVWQNNFTGAIPSKLGENGRLTELDLSTNKLTGLVPERLCLGGRLKILILLNNFLFGPLPRDLGRCQTLVRVRMGQNYLTGPIPEGLLYLPQLSLVELQNNYLSGPLPQDMRMRPLPSKLAQLNLANNRFSGSLPTSVGNFTNLQILLLRGNRFSGDIPSQIGKLRNLLKLDMNSNNFSGTIPPELGACVSLTYLDLSLNHLTSPIPVQISQIRILNYLNLSWNRLNQSLPKEIGSIKSLTCADFSHNDLSGPIPETGQFLLFNSTSFEGNPQLCGSALNPCNVSTSKSQTSTPANSKTVGKYKLVFALGLLMCSVIFAALAIIQTRKAKKKSSSWKLAAFQKLEFGSKDIIECVKENNIIGKGGAGIVYKGVMPSGEQVAIKKLLAINKGSSHDNGLSAEIQTLGKIRHRNIVRLLAFCSNKQTNLLVYEYMPNGSLGEVLHEKRGGCLKWGTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDYEAHVADFGLAKFLQDNGTSECMSVIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGNFGEDGLDIVQWTKIQTNSTKEGVVKILDQRLSNIPIDEAKQMFFVAMLCVQEHSVERPTMREVLQMLAQAHQPNTFHMH 1594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12038 25897 + CmoCh07G000020.1 Cmo07g00002 385310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00002 1594 Pfam CTP synthase N-terminus 1 116 IPR017456 GO:0003883|GO:0006221
Cmo07g00002 1594 Gene3D Ribonuclease Inhibitor 997 1070 IPR032675 -
Cmo07g00002 1594 PANTHER UNNAMED PRODUCT 665 724 - -
Cmo07g00002 1594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1432 1444 IPR008271 GO:0004672|GO:0006468
Cmo07g00002 1594 Gene3D Ribonuclease Inhibitor 1158 1237 IPR032675 -
Cmo07g00002 1594 SUPERFAMILY Class I glutamine amidotransferase-like 218 459 IPR029062 -
Cmo07g00002 1594 Pfam Glutamine amidotransferase class-I 218 455 IPR017926 -
Cmo07g00002 1594 Gene3D Ribonuclease Inhibitor 668 819 IPR032675 -
Cmo07g00002 1594 Gene3D Ribonuclease Inhibitor 820 920 IPR032675 -
Cmo07g00002 1594 SUPERFAMILY Protein kinase-like (PK-like) 1306 1582 IPR011009 -
Cmo07g00002 1594 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 720 1591 - -
Cmo07g00002 1594 SMART serkin_6 1310 1560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00002 1594 CDD GATase1_CTP_Synthase 222 454 IPR033828 GO:0003883|GO:0006241
Cmo07g00002 1594 PANTHER UNNAMED PRODUCT 720 1591 - -
Cmo07g00002 1594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 116 IPR027417 -
Cmo07g00002 1594 Pfam Protein kinase domain 1312 1580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00002 1594 Gene3D Transferase(Phosphotransferase) domain 1 1388 1593 - -
Cmo07g00002 1594 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 665 724 - -
Cmo07g00002 1594 SMART LRR_typ_2 877 900 IPR003591 -
Cmo07g00002 1594 SMART LRR_typ_2 901 924 IPR003591 -
Cmo07g00002 1594 SMART LRR_typ_2 974 997 IPR003591 -
Cmo07g00002 1594 SMART LRR_typ_2 1168 1192 IPR003591 -
Cmo07g00002 1594 SMART LRR_typ_2 1120 1144 IPR003591 -
Cmo07g00002 1594 SMART LRR_typ_2 732 755 IPR003591 -
Cmo07g00002 1594 SMART LRR_typ_2 804 828 IPR003591 -
Cmo07g00002 1594 SMART LRR_typ_2 949 973 IPR003591 -
Cmo07g00002 1594 SUPERFAMILY L domain-like 695 991 - -
Cmo07g00002 1594 Gene3D - 1 121 IPR027417 -
Cmo07g00002 1594 Gene3D - 216 472 IPR029062 -
Cmo07g00002 1594 Gene3D Phosphorylase Kinase; domain 1 1275 1387 - -
Cmo07g00002 1594 Gene3D Ribonuclease Inhibitor 1071 1157 IPR032675 -
Cmo07g00002 1594 Pfam Leucine Rich Repeat 782 800 IPR001611 GO:0005515
Cmo07g00002 1594 SUPERFAMILY L domain-like 922 1238 - -
Cmo07g00002 1594 ProSiteProfiles Protein kinase domain profile. 1310 1594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00002 1594 Gene3D Ribonuclease Inhibitor 921 996 IPR032675 -
Cmo07g00002 1594 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 232 463 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00002 Cmo-Chr7:12038 Cmo16g00839 Cmo-Chr16:4422624 0 dispersed
Cmo08g00445 Cmo-Chr8:2752103 Cmo07g00002 Cmo-Chr7:12038 1.46E-137 dispersed
Cmo17g01021 Cmo-Chr17:8740559 Cmo07g00002 Cmo-Chr7:12038 5.31E-153 dispersed
Cmo19g01157 Cmo-Chr19:9741098 Cmo07g00002 Cmo-Chr7:12038 0 dispersed
Cmo07g00002 Cmo-Chr7:12038 Cmo04g00967 Cmo-Chr4:4920178 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74443 PF00069 Pkinase 5.10E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00002 - - vvi:100258232 1388.63