Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00005 | ATGGCGAAAGACCGAGAAAAGAGGATGTATGTCGGAGTTTTTTTTAGCTATGCTGCGGAACTCAAGCTTTTTCTTTCCGCTCTCCTCCTTCTCTGTGCTCTCGCTACTCTCCTCCAGTTCCTTCCTTCTCGTTTCACGCTCTCTATCGCAGATCTCCGTTCCTGCTCCGCCGCCCGAGATTCCCCTCCTCTTCCTCCTCCTCCTCCATCTTCTCTATCAGCAACACTCCGTTCTTCTGTACCCCCTCCAACTCTCATCCCCTCCCCTCCAACAGATCAGCTGCTTCCCAATGGCGTTCTCCGCCGCGCTTTTCACCCTTACGGTGCTGCTGCTTATAACTTCATTACTATGGGTGCTTACAGAGGCGGCCTCCACAACTTTGCCATTGTTGGTTTAGCCTCCAAGCCTCTTCACGTCTTTGGGCGTCCCACTTTCCAATGCCAGTGGATTCCTCGCCTCCACCCCTCTAATCCCATCAACGCCTCCGCCTTCAAGATCCTTCCCGACTGGGGCTACGGTCGCGTTTACACCGTCGTCGTCGTCAATTGCACTTTTCCTCACCCTGTTAATGCCGACAACCAGGGTGGAAAATTGGTTCTCTATGCCTCCACTTCCGGTGGCGGCGACCGCGACATCAACCTTACCGACACGATTGAGGTTCTAACAGAAACCCCCGGTGGAATGAACGCTTCCCTTTTCACATCGAAGCCCAAATACGACTATCTCTACTGTGGGTCGTCTCTGTATGGGAACTTGAGCCCCCAGAGAGTGAGAGAGTGGTTGGCATACCATATCAGGCTATTCGGGGCCAGATCCCACTTTGTAATACATGATGCGGGCGGGGTTCATGATGAGGTGCTGGAAGTTTTAAAGCCATGGATGGAATTGGGGTATGTGACATTGCAGGACATCAGGGAGGAGGAAAGGTTCGATGGATACTATCACAACCAATTCATGGTGGTGAATGACTGTTTGCATCGGTACAAGTTTATGGCGAAGTGGATGTTCTTCTTCGACGTGGATGAGTTCATCTTCGTGCCGCCGAAGAACACCATAAAATCAGTTCTGGATTCGCTTTCAGAGTACTCCCAGTTTACAATTGAGCAGATGCCGATGAACAGCAAGACGTGTCTGACAGAGGATGCGGGGAGAACCTACAGGAAGTGGGGGTTTGAGAAGCTGGTATACAAGGATGTGAAAAGGGGAATAAGGAGGGACAGGAAGTACGCAGTGCAGCCGCGGATGGTGTATGCGACGGGGGTGCACATGTCGGAGAACGTAGCCGGGAAGTCCACACACAAGACGGACAGGATCATAAAATACTTCCATTACCATGGCACCATTGCGCAGAGGAGGGAGCCCTGCCGCTCCCTTTCCAATCAAACCCAGCTTACTCTCGACAACACCCCCCATGTGTTGGACACCACCATGCGCCTCGTCGCCCCCGCCGTCAAGAGATTCGAGCTTAAAATGATCGGTACCAGTATAGAGAAAGAGGAGATGGGTGATGTCGGCATCCCACGCAAACAAAAGGGAAAGGAAGGGCGACACACTGGTGAAGATATGGAGAGCCATGGAGCTGGTAGTTATTTCGTGGATGAGAAGTCTGTTCTTGTCGAAAACATTTTCTTCGACTTCCTCAAGAGTTTTCGCCTCGTTGGGAACTCTGGAGACCCTTACTACGAGGCAGAGATAGAAGCTATGATGGCTGGCGAATCTAACACCATGTTCATTGATTTCTCTCACCTTATGCGCTCCAATGATCTTCTTCACGTAGCAATCGCCGACGAATATCTCAGGTTTGAACCATACCTCAAGAACGCTTGCAAGCGATTCGTAATGGAGCATAATCCTTCTTTCATCGCTGACGATAACCCCTTCAAGGACATAAATGTCGCTTTCTTCAACATTCCCGTTTCTAAAAGGTTGAGAGAATTGACCACTGCAGAAATTGGGAAATTAGTATCTGTGACAGGAGTGGTGACGCGGACAAGTGAGGTCCGACCAGAGCTTCTACAGGGGACCTTCAAGTGCTTAGAATGTGGGAATGTTATTAAGAACGTCGAACAACAATTTAAGTACACGGAGAGGGTGCGAATGCAAGAGACTTCAAAGGAGATACCGGCTGGCTCTCTTCCACGATCTTTGGATGTAATTCTCCGCCATGAAATGGTCGAACGTGCTAGGGCTGGAGACACGGTCATCTTCACGGGTACAGTAGTTGTCATACCAGATATATTAGCATTAGCCTCTCCAGGAGAAAGAGCAGAATGTCGTCGGGAAGCTTCAGAGCGAAAAAATTCTGCGGTTGGACATGAAGGAATGAGGGGTCTACGAGCCCTAGGAGTGAGGGACCTGTCCTACCGCCTAGCCTTTATTGCCAATTCAGTTCAGGTTTTAGATGGCAGAAGGGATTTTGATATCAGAAATAGGAAAAAGGATGCGGATGAAGACAACCAACAGTTCACCACTGAAGAGCTTGATGAAGTTCAAAGAATGAGGAATACCCCTGACTTCTTCAACAGACTTATTGATAGCATTGCACCAGCAGTCTTTGGCCATCAAGATATCAAGCGAGCAATTCTGCTAATGCTGTTAGGCGGTGTCCACAAGTTAACCCATGAAGGAATTAACCTTCGAGGTGATATCAATGTCTGTATAGTAGGAGATCCAAGTTGTGCAAAATCTCAGTTTCTTAAGTATACGTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAATCTTCTTCTGCTGCTGGATTAACTGCAACTGTAGCCAAAGAGCCAGAAACAGGAGAGTTTTGTATTGAGGCTGGTGCCTTGATGCTTGCGGACAATGGCATTTGCTGTATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATAACGAAAGCCGGAATACAGGCAACACTAAATGCCAGGACGTCAATCCTTGCTGCTGCTAATCCTACAGGAGGGCGCTATGACAAATCTAAACCACTAAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTTGTGTACGTGATGATAGATGACCCAGATGATCAAACAGATTACCACATTGCACACCACATTGTGAGAGTACACCAGAAGCATGAAGACGCTCTTTCTCCTGCATTTACCACTGCTGAGTTGAAGCGTTATATTGCATATGCAAAAACTCTAAAACCTAAGTTAAGTTTAGAAGCCAGAAAAGTATTGGTGGACTCTTATGTTGCTCTTCGCAGAGGAGATACAACTCCTGGAAGTAGGGTTGCTTATCGCATGACAGTTAGGCAGCTCGAGGCATTAATAAGGCTGTCCGAAGCAATTGCACGAAGTTATATGGAGACTTTGGTTCAATCGCGCCATGTGCGTTTAGCAGTGACCTTACTGAAAACTGTGGAATCTAGCGAGATTGACCTATCTGAATTTCAAGAAGAAACTAATGGAGGTGGAGATGGTGATAATAATGTAGACAATAGGCCTCATGAGGTTGGTGCTGAACCTAGGAATGGTGCAACAGAGCCAACTTCTGGAAATGGTGGTTCTGGCAGTCAACATGAGAAGAAGAAACTTCTCCTGAGTGATGAATATTTTCAGAGGGTTACCCAAGCCCTTGTCATGCGCCTCAGACAGCACGAAGAATCTGTGATGCAAGAAGGAACTGAGCTGGCGGGAATGAGGCAGAGAGATCTGATTCAATGGTATGTGGCTCAGCAGAACGAGAAGAATAGCTATAGCTCCATGGAGGAGGCAAAAAAAGAAGTTAAAACAATTAGAAGTATTATTGAGAGTTTGATAGTAAGGGAAGGCCATTTGATAGTTGTAGATGACGGGAGGCCAGTAGATGGCGGGGTTGAAGGCGAACCATCGTTAATTAAGGATAACAGGATTTTAGCTGTGGCTCCCAATTATGTCGTTGATTGA | 3969 | 47.49 | MAKDREKRMYVGVFFSYAAELKLFLSALLLLCALATLLQFLPSRFTLSIADLRSCSAARDSPPLPPPPPSSLSATLRSSVPPPTLIPSPPTDQLLPNGVLRRAFHPYGAAAYNFITMGAYRGGLHNFAIVGLASKPLHVFGRPTFQCQWIPRLHPSNPINASAFKILPDWGYGRVYTVVVVNCTFPHPVNADNQGGKLVLYASTSGGGDRDINLTDTIEVLTETPGGMNASLFTSKPKYDYLYCGSSLYGNLSPQRVREWLAYHIRLFGARSHFVIHDAGGVHDEVLEVLKPWMELGYVTLQDIREEERFDGYYHNQFMVVNDCLHRYKFMAKWMFFFDVDEFIFVPPKNTIKSVLDSLSEYSQFTIEQMPMNSKTCLTEDAGRTYRKWGFEKLVYKDVKRGIRRDRKYAVQPRMVYATGVHMSENVAGKSTHKTDRIIKYFHYHGTIAQRREPCRSLSNQTQLTLDNTPHVLDTTMRLVAPAVKRFELKMIGTSIEKEEMGDVGIPRKQKGKEGRHTGEDMESHGAGSYFVDEKSVLVENIFFDFLKSFRLVGNSGDPYYEAEIEAMMAGESNTMFIDFSHLMRSNDLLHVAIADEYLRFEPYLKNACKRFVMEHNPSFIADDNPFKDINVAFFNIPVSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTERVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVIFTGTVVVIPDILALASPGERAECRREASERKNSAVGHEGMRGLRALGVRDLSYRLAFIANSVQVLDGRRDFDIRNRKKDADEDNQQFTTEELDEVQRMRNTPDFFNRLIDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSYMETLVQSRHVRLAVTLLKTVESSEIDLSEFQEETNGGGDGDNNVDNRPHEVGAEPRNGATEPTSGNGGSGSQHEKKKLLLSDEYFQRVTQALVMRLRQHEESVMQEGTELAGMRQRDLIQWYVAQQNEKNSYSSMEEAKKEVKTIRSIIESLIVREGHLIVVDDGRPVDGGVEGEPSLIKDNRILAVAPNYVVD | 1322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 42857 | 52813 | - | CmoCh07G000050.1 | Cmo07g00005 | 385313 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00005 | 1322 | Pfam | MCM P-loop domain | 827 | 1049 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00005 | 1322 | Gene3D | - | 531 | 639 | - | - | |
Cmo07g00005 | 1322 | MobiDBLite | consensus disorder prediction | 506 | 525 | - | - | |
Cmo07g00005 | 1322 | Pfam | MCM6 C-terminal winged-helix domain | 1205 | 1321 | IPR041024 | - | |
Cmo07g00005 | 1322 | SUPERFAMILY | Nucleic acid-binding proteins | 543 | 745 | IPR012340 | - | |
Cmo07g00005 | 1322 | SMART | mcm | 639 | 1150 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00005 | 1322 | CDD | MCM6 | 842 | 1147 | - | - | |
Cmo07g00005 | 1322 | Gene3D | - | 641 | 761 | IPR012340 | - | |
Cmo07g00005 | 1322 | Gene3D | - | 817 | 1153 | IPR027417 | - | |
Cmo07g00005 | 1322 | Pfam | MCM AAA-lid domain | 1064 | 1147 | IPR041562 | - | |
Cmo07g00005 | 1322 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 533 | 1274 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00005 | 1322 | Pfam | Glycosyltransferase family 92 | 240 | 451 | IPR008166 | - | |
Cmo07g00005 | 1322 | ProSitePatterns | MCM family signature. | 948 | 956 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
Cmo07g00005 | 1322 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 849 | 1145 | IPR027417 | - | |
Cmo07g00005 | 1322 | ProSiteProfiles | MCM family domain profile. | 839 | 1045 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00005 | 1322 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 1019 | 1027 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00005 | 1322 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 992 | 1004 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00005 | 1322 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 940 | 954 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00005 | 1322 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 968 | 981 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00005 | 1322 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 880 | 895 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00005 | 1322 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 598 | 610 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
Cmo07g00005 | 1322 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 774 | 795 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
Cmo07g00005 | 1322 | MobiDBLite | consensus disorder prediction | 1155 | 1202 | - | - | |
Cmo07g00005 | 1322 | Gene3D | - | 1201 | 1322 | - | - | |
Cmo07g00005 | 1322 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM6 | 533 | 1274 | - | - | |
Cmo07g00005 | 1322 | Pfam | MCM N-terminal domain | 542 | 636 | IPR027925 | - | |
Cmo07g00005 | 1322 | MobiDBLite | consensus disorder prediction | 58 | 79 | - | - | |
Cmo07g00005 | 1322 | MobiDBLite | consensus disorder prediction | 506 | 523 | - | - | |
Cmo07g00005 | 1322 | Pfam | MCM OB domain | 689 | 743 | IPR033762 | - | |
Cmo07g00005 | 1322 | Pfam | MCM OB domain | 643 | 686 | IPR033762 | - | |
Cmo07g00005 | 1322 | Coils | Coil | 1263 | 1283 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g02109 | Cmo-Chr1:14593232 | Cmo07g00005 | Cmo-Chr7:42857 | 1.45E-150 | dispersed | |
Cmo07g00005 | Cmo-Chr7:42857 | Cmo19g00696 | Cmo-Chr19:7351871 | 3.70E-95 | dispersed | |
Cmo03g01510 | Cmo-Chr3:10817483 | Cmo07g00005 | Cmo-Chr7:42857 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00005 | K02542 | - | csv:101219775 | 1406.73 |