Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00005 ATGGCGAAAGACCGAGAAAAGAGGATGTATGTCGGAGTTTTTTTTAGCTATGCTGCGGAACTCAAGCTTTTTCTTTCCGCTCTCCTCCTTCTCTGTGCTCTCGCTACTCTCCTCCAGTTCCTTCCTTCTCGTTTCACGCTCTCTATCGCAGATCTCCGTTCCTGCTCCGCCGCCCGAGATTCCCCTCCTCTTCCTCCTCCTCCTCCATCTTCTCTATCAGCAACACTCCGTTCTTCTGTACCCCCTCCAACTCTCATCCCCTCCCCTCCAACAGATCAGCTGCTTCCCAATGGCGTTCTCCGCCGCGCTTTTCACCCTTACGGTGCTGCTGCTTATAACTTCATTACTATGGGTGCTTACAGAGGCGGCCTCCACAACTTTGCCATTGTTGGTTTAGCCTCCAAGCCTCTTCACGTCTTTGGGCGTCCCACTTTCCAATGCCAGTGGATTCCTCGCCTCCACCCCTCTAATCCCATCAACGCCTCCGCCTTCAAGATCCTTCCCGACTGGGGCTACGGTCGCGTTTACACCGTCGTCGTCGTCAATTGCACTTTTCCTCACCCTGTTAATGCCGACAACCAGGGTGGAAAATTGGTTCTCTATGCCTCCACTTCCGGTGGCGGCGACCGCGACATCAACCTTACCGACACGATTGAGGTTCTAACAGAAACCCCCGGTGGAATGAACGCTTCCCTTTTCACATCGAAGCCCAAATACGACTATCTCTACTGTGGGTCGTCTCTGTATGGGAACTTGAGCCCCCAGAGAGTGAGAGAGTGGTTGGCATACCATATCAGGCTATTCGGGGCCAGATCCCACTTTGTAATACATGATGCGGGCGGGGTTCATGATGAGGTGCTGGAAGTTTTAAAGCCATGGATGGAATTGGGGTATGTGACATTGCAGGACATCAGGGAGGAGGAAAGGTTCGATGGATACTATCACAACCAATTCATGGTGGTGAATGACTGTTTGCATCGGTACAAGTTTATGGCGAAGTGGATGTTCTTCTTCGACGTGGATGAGTTCATCTTCGTGCCGCCGAAGAACACCATAAAATCAGTTCTGGATTCGCTTTCAGAGTACTCCCAGTTTACAATTGAGCAGATGCCGATGAACAGCAAGACGTGTCTGACAGAGGATGCGGGGAGAACCTACAGGAAGTGGGGGTTTGAGAAGCTGGTATACAAGGATGTGAAAAGGGGAATAAGGAGGGACAGGAAGTACGCAGTGCAGCCGCGGATGGTGTATGCGACGGGGGTGCACATGTCGGAGAACGTAGCCGGGAAGTCCACACACAAGACGGACAGGATCATAAAATACTTCCATTACCATGGCACCATTGCGCAGAGGAGGGAGCCCTGCCGCTCCCTTTCCAATCAAACCCAGCTTACTCTCGACAACACCCCCCATGTGTTGGACACCACCATGCGCCTCGTCGCCCCCGCCGTCAAGAGATTCGAGCTTAAAATGATCGGTACCAGTATAGAGAAAGAGGAGATGGGTGATGTCGGCATCCCACGCAAACAAAAGGGAAAGGAAGGGCGACACACTGGTGAAGATATGGAGAGCCATGGAGCTGGTAGTTATTTCGTGGATGAGAAGTCTGTTCTTGTCGAAAACATTTTCTTCGACTTCCTCAAGAGTTTTCGCCTCGTTGGGAACTCTGGAGACCCTTACTACGAGGCAGAGATAGAAGCTATGATGGCTGGCGAATCTAACACCATGTTCATTGATTTCTCTCACCTTATGCGCTCCAATGATCTTCTTCACGTAGCAATCGCCGACGAATATCTCAGGTTTGAACCATACCTCAAGAACGCTTGCAAGCGATTCGTAATGGAGCATAATCCTTCTTTCATCGCTGACGATAACCCCTTCAAGGACATAAATGTCGCTTTCTTCAACATTCCCGTTTCTAAAAGGTTGAGAGAATTGACCACTGCAGAAATTGGGAAATTAGTATCTGTGACAGGAGTGGTGACGCGGACAAGTGAGGTCCGACCAGAGCTTCTACAGGGGACCTTCAAGTGCTTAGAATGTGGGAATGTTATTAAGAACGTCGAACAACAATTTAAGTACACGGAGAGGGTGCGAATGCAAGAGACTTCAAAGGAGATACCGGCTGGCTCTCTTCCACGATCTTTGGATGTAATTCTCCGCCATGAAATGGTCGAACGTGCTAGGGCTGGAGACACGGTCATCTTCACGGGTACAGTAGTTGTCATACCAGATATATTAGCATTAGCCTCTCCAGGAGAAAGAGCAGAATGTCGTCGGGAAGCTTCAGAGCGAAAAAATTCTGCGGTTGGACATGAAGGAATGAGGGGTCTACGAGCCCTAGGAGTGAGGGACCTGTCCTACCGCCTAGCCTTTATTGCCAATTCAGTTCAGGTTTTAGATGGCAGAAGGGATTTTGATATCAGAAATAGGAAAAAGGATGCGGATGAAGACAACCAACAGTTCACCACTGAAGAGCTTGATGAAGTTCAAAGAATGAGGAATACCCCTGACTTCTTCAACAGACTTATTGATAGCATTGCACCAGCAGTCTTTGGCCATCAAGATATCAAGCGAGCAATTCTGCTAATGCTGTTAGGCGGTGTCCACAAGTTAACCCATGAAGGAATTAACCTTCGAGGTGATATCAATGTCTGTATAGTAGGAGATCCAAGTTGTGCAAAATCTCAGTTTCTTAAGTATACGTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAATCTTCTTCTGCTGCTGGATTAACTGCAACTGTAGCCAAAGAGCCAGAAACAGGAGAGTTTTGTATTGAGGCTGGTGCCTTGATGCTTGCGGACAATGGCATTTGCTGTATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATAACGAAAGCCGGAATACAGGCAACACTAAATGCCAGGACGTCAATCCTTGCTGCTGCTAATCCTACAGGAGGGCGCTATGACAAATCTAAACCACTAAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTTGTGTACGTGATGATAGATGACCCAGATGATCAAACAGATTACCACATTGCACACCACATTGTGAGAGTACACCAGAAGCATGAAGACGCTCTTTCTCCTGCATTTACCACTGCTGAGTTGAAGCGTTATATTGCATATGCAAAAACTCTAAAACCTAAGTTAAGTTTAGAAGCCAGAAAAGTATTGGTGGACTCTTATGTTGCTCTTCGCAGAGGAGATACAACTCCTGGAAGTAGGGTTGCTTATCGCATGACAGTTAGGCAGCTCGAGGCATTAATAAGGCTGTCCGAAGCAATTGCACGAAGTTATATGGAGACTTTGGTTCAATCGCGCCATGTGCGTTTAGCAGTGACCTTACTGAAAACTGTGGAATCTAGCGAGATTGACCTATCTGAATTTCAAGAAGAAACTAATGGAGGTGGAGATGGTGATAATAATGTAGACAATAGGCCTCATGAGGTTGGTGCTGAACCTAGGAATGGTGCAACAGAGCCAACTTCTGGAAATGGTGGTTCTGGCAGTCAACATGAGAAGAAGAAACTTCTCCTGAGTGATGAATATTTTCAGAGGGTTACCCAAGCCCTTGTCATGCGCCTCAGACAGCACGAAGAATCTGTGATGCAAGAAGGAACTGAGCTGGCGGGAATGAGGCAGAGAGATCTGATTCAATGGTATGTGGCTCAGCAGAACGAGAAGAATAGCTATAGCTCCATGGAGGAGGCAAAAAAAGAAGTTAAAACAATTAGAAGTATTATTGAGAGTTTGATAGTAAGGGAAGGCCATTTGATAGTTGTAGATGACGGGAGGCCAGTAGATGGCGGGGTTGAAGGCGAACCATCGTTAATTAAGGATAACAGGATTTTAGCTGTGGCTCCCAATTATGTCGTTGATTGA 3969 47.49 MAKDREKRMYVGVFFSYAAELKLFLSALLLLCALATLLQFLPSRFTLSIADLRSCSAARDSPPLPPPPPSSLSATLRSSVPPPTLIPSPPTDQLLPNGVLRRAFHPYGAAAYNFITMGAYRGGLHNFAIVGLASKPLHVFGRPTFQCQWIPRLHPSNPINASAFKILPDWGYGRVYTVVVVNCTFPHPVNADNQGGKLVLYASTSGGGDRDINLTDTIEVLTETPGGMNASLFTSKPKYDYLYCGSSLYGNLSPQRVREWLAYHIRLFGARSHFVIHDAGGVHDEVLEVLKPWMELGYVTLQDIREEERFDGYYHNQFMVVNDCLHRYKFMAKWMFFFDVDEFIFVPPKNTIKSVLDSLSEYSQFTIEQMPMNSKTCLTEDAGRTYRKWGFEKLVYKDVKRGIRRDRKYAVQPRMVYATGVHMSENVAGKSTHKTDRIIKYFHYHGTIAQRREPCRSLSNQTQLTLDNTPHVLDTTMRLVAPAVKRFELKMIGTSIEKEEMGDVGIPRKQKGKEGRHTGEDMESHGAGSYFVDEKSVLVENIFFDFLKSFRLVGNSGDPYYEAEIEAMMAGESNTMFIDFSHLMRSNDLLHVAIADEYLRFEPYLKNACKRFVMEHNPSFIADDNPFKDINVAFFNIPVSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTERVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVIFTGTVVVIPDILALASPGERAECRREASERKNSAVGHEGMRGLRALGVRDLSYRLAFIANSVQVLDGRRDFDIRNRKKDADEDNQQFTTEELDEVQRMRNTPDFFNRLIDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSYMETLVQSRHVRLAVTLLKTVESSEIDLSEFQEETNGGGDGDNNVDNRPHEVGAEPRNGATEPTSGNGGSGSQHEKKKLLLSDEYFQRVTQALVMRLRQHEESVMQEGTELAGMRQRDLIQWYVAQQNEKNSYSSMEEAKKEVKTIRSIIESLIVREGHLIVVDDGRPVDGGVEGEPSLIKDNRILAVAPNYVVD 1322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42857 52813 - CmoCh07G000050.1 Cmo07g00005 385313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00005 1322 Pfam MCM P-loop domain 827 1049 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo07g00005 1322 Gene3D - 531 639 - -
Cmo07g00005 1322 MobiDBLite consensus disorder prediction 506 525 - -
Cmo07g00005 1322 Pfam MCM6 C-terminal winged-helix domain 1205 1321 IPR041024 -
Cmo07g00005 1322 SUPERFAMILY Nucleic acid-binding proteins 543 745 IPR012340 -
Cmo07g00005 1322 SMART mcm 639 1150 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo07g00005 1322 CDD MCM6 842 1147 - -
Cmo07g00005 1322 Gene3D - 641 761 IPR012340 -
Cmo07g00005 1322 Gene3D - 817 1153 IPR027417 -
Cmo07g00005 1322 Pfam MCM AAA-lid domain 1064 1147 IPR041562 -
Cmo07g00005 1322 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 533 1274 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo07g00005 1322 Pfam Glycosyltransferase family 92 240 451 IPR008166 -
Cmo07g00005 1322 ProSitePatterns MCM family signature. 948 956 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cmo07g00005 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 849 1145 IPR027417 -
Cmo07g00005 1322 ProSiteProfiles MCM family domain profile. 839 1045 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo07g00005 1322 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1019 1027 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo07g00005 1322 PRINTS Mini-chromosome maintenance (MCM) protein family signature 992 1004 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo07g00005 1322 PRINTS Mini-chromosome maintenance (MCM) protein family signature 940 954 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo07g00005 1322 PRINTS Mini-chromosome maintenance (MCM) protein family signature 968 981 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo07g00005 1322 PRINTS Mini-chromosome maintenance (MCM) protein family signature 880 895 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo07g00005 1322 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 598 610 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cmo07g00005 1322 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 774 795 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cmo07g00005 1322 MobiDBLite consensus disorder prediction 1155 1202 - -
Cmo07g00005 1322 Gene3D - 1201 1322 - -
Cmo07g00005 1322 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 533 1274 - -
Cmo07g00005 1322 Pfam MCM N-terminal domain 542 636 IPR027925 -
Cmo07g00005 1322 MobiDBLite consensus disorder prediction 58 79 - -
Cmo07g00005 1322 MobiDBLite consensus disorder prediction 506 523 - -
Cmo07g00005 1322 Pfam MCM OB domain 689 743 IPR033762 -
Cmo07g00005 1322 Pfam MCM OB domain 643 686 IPR033762 -
Cmo07g00005 1322 Coils Coil 1263 1283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02109 Cmo-Chr1:14593232 Cmo07g00005 Cmo-Chr7:42857 1.45E-150 dispersed
Cmo07g00005 Cmo-Chr7:42857 Cmo19g00696 Cmo-Chr19:7351871 3.70E-95 dispersed
Cmo03g01510 Cmo-Chr3:10817483 Cmo07g00005 Cmo-Chr7:42857 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00005 K02542 - csv:101219775 1406.73