Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00034 | ATGGGGAAGAAGAAGAAGAGGGTTTCGTCCAAGGTATGGTGCTACTATTGCGACAGGGAATTCGACGACGAGAAGATATTGGTGCAGCATCAGAAGGCCAAGCACTTTAAGTGCCATGTCTGCCATAAGAAGCTTTCTACTGCTGGTGGTATGGTCATCCACGTTCTTCAGGTCCACAAAGAGTCAGTCACCAAAGTTCCTAATGCAAAGGCTGGCAGAGAATCAACAGATATTGAAATATATGGAATGCAAGGAATTCCACCTGATGTCTTGGCAGCACACTATGGAGAGGAGGATGAAGAGTCTGCATCGAAGGTGGCCAAAGTGGAGATGCCACCAACTCAGATGGTTGGTGGTATGGTGCATGGATCGCTAGGTATTATGTACCCTCCTCAACCAGGTTTAGCTGCAATGCGACCTATTTATGCTTCAACTGGACAAGTGCAGCCTACTGCCTGGCAAGTTCCACCTCGTCCCCAACCTTGGTTTCCCCCAAATTCAGCCGTTTCAGTTCCCCCTCCTGCCCCATTGGGCTATGCTCAGCAGCCACTATTTCCTGTGCAGACTGCTAGGCCCCCACTCCTAGTATCTTCAACTCCTATGCTCCAGCCTCCACAAATAACGCCTCCTGGATTGCCTTCAACTACACCTTCAGTTTCGGTATCTCAACCGTTGTTCCCTGTTGTTAGTAATAGCCACGGATCTTCCCAAAGCTCTCCTTTTCCTTCATCTTCACTTCCAACAAGCATTCCTTTGACATCTGCAGCAGAAATCAAGGGCTTGAGTATACATTTGGGTGGAGTATTGAGCAATTCACACTCTTATGCCTCGGGACCAAATACAGGCGGTCCGTCCATTGGACCTCCTCCTGTAATTGCGAATAAAGCTCCTATTCAGCCATCAACAAATGAAGTATATTTGGTTTGGGATGATGAGGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAACTAAGTATCAGGTGCATGATGAAACTAGCCAGGTAAGTTATACTACAACTTAA | 1023 | 47.12 | MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKAGRESTDIEIYGMQGIPPDVLAAHYGEEDEESASKVAKVEMPPTQMVGGMVHGSLGIMYPPQPGLAAMRPIYASTGQVQPTAWQVPPRPQPWFPPNSAVSVPPPAPLGYAQQPLFPVQTARPPLLVSSTPMLQPPQITPPGLPSTTPSVSVSQPLFPVVSNSHGSSQSSPFPSSSLPTSIPLTSAAEIKGLSIHLGGVLSNSHSYASGPNTGGPSIGPPPVIANKAPIQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQVSYTTT | 340 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 216905 | 223047 | + | CmoCh07G000340.1 | Cmo07g00034 | 385342 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00034 | 340 | ProSiteProfiles | Zinc finger BED-type profile. | 7 | 66 | IPR003656 | GO:0003677 | |
Cmo07g00034 | 340 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 38 | 59 | IPR013087 | - | |
Cmo07g00034 | 340 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 14 | 35 | IPR013087 | - | |
Cmo07g00034 | 340 | Gene3D | Classic Zinc Finger | 1 | 66 | - | - | |
Cmo07g00034 | 340 | PANTHER | ZINC FINGER PROTEIN 207 | 1 | 338 | - | - | |
Cmo07g00034 | 340 | PANTHER | BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 | 1 | 338 | - | - | |
Cmo07g00034 | 340 | SMART | c2h2final6 | 12 | 35 | IPR013087 | - | |
Cmo07g00034 | 340 | SMART | c2h2final6 | 36 | 59 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g01479 | Cmo-Chr3:10623931 | Cmo07g00034 | Cmo-Chr7:216905 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10056 | None | None | None | None | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00034 | - | - | cmo:103484275 | 567.385 |