Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00034 ATGGGGAAGAAGAAGAAGAGGGTTTCGTCCAAGGTATGGTGCTACTATTGCGACAGGGAATTCGACGACGAGAAGATATTGGTGCAGCATCAGAAGGCCAAGCACTTTAAGTGCCATGTCTGCCATAAGAAGCTTTCTACTGCTGGTGGTATGGTCATCCACGTTCTTCAGGTCCACAAAGAGTCAGTCACCAAAGTTCCTAATGCAAAGGCTGGCAGAGAATCAACAGATATTGAAATATATGGAATGCAAGGAATTCCACCTGATGTCTTGGCAGCACACTATGGAGAGGAGGATGAAGAGTCTGCATCGAAGGTGGCCAAAGTGGAGATGCCACCAACTCAGATGGTTGGTGGTATGGTGCATGGATCGCTAGGTATTATGTACCCTCCTCAACCAGGTTTAGCTGCAATGCGACCTATTTATGCTTCAACTGGACAAGTGCAGCCTACTGCCTGGCAAGTTCCACCTCGTCCCCAACCTTGGTTTCCCCCAAATTCAGCCGTTTCAGTTCCCCCTCCTGCCCCATTGGGCTATGCTCAGCAGCCACTATTTCCTGTGCAGACTGCTAGGCCCCCACTCCTAGTATCTTCAACTCCTATGCTCCAGCCTCCACAAATAACGCCTCCTGGATTGCCTTCAACTACACCTTCAGTTTCGGTATCTCAACCGTTGTTCCCTGTTGTTAGTAATAGCCACGGATCTTCCCAAAGCTCTCCTTTTCCTTCATCTTCACTTCCAACAAGCATTCCTTTGACATCTGCAGCAGAAATCAAGGGCTTGAGTATACATTTGGGTGGAGTATTGAGCAATTCACACTCTTATGCCTCGGGACCAAATACAGGCGGTCCGTCCATTGGACCTCCTCCTGTAATTGCGAATAAAGCTCCTATTCAGCCATCAACAAATGAAGTATATTTGGTTTGGGATGATGAGGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAACTAAGTATCAGGTGCATGATGAAACTAGCCAGGTAAGTTATACTACAACTTAA 1023 47.12 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKAGRESTDIEIYGMQGIPPDVLAAHYGEEDEESASKVAKVEMPPTQMVGGMVHGSLGIMYPPQPGLAAMRPIYASTGQVQPTAWQVPPRPQPWFPPNSAVSVPPPAPLGYAQQPLFPVQTARPPLLVSSTPMLQPPQITPPGLPSTTPSVSVSQPLFPVVSNSHGSSQSSPFPSSSLPTSIPLTSAAEIKGLSIHLGGVLSNSHSYASGPNTGGPSIGPPPVIANKAPIQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQVSYTTT 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 216905 223047 + CmoCh07G000340.1 Cmo07g00034 385342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00034 340 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Cmo07g00034 340 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Cmo07g00034 340 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Cmo07g00034 340 Gene3D Classic Zinc Finger 1 66 - -
Cmo07g00034 340 PANTHER ZINC FINGER PROTEIN 207 1 338 - -
Cmo07g00034 340 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 338 - -
Cmo07g00034 340 SMART c2h2final6 12 35 IPR013087 -
Cmo07g00034 340 SMART c2h2final6 36 59 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01479 Cmo-Chr3:10623931 Cmo07g00034 Cmo-Chr7:216905 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10056 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00034 - - cmo:103484275 567.385