Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00050 ATGTCGCCTCTTCCTCTGATCCTCCTCCTCTCCCTTCCATTAGCATTTTCCTATGAAACAGAGGGATCCCCTGTTCAAAGTTTTGTGGACTGTCTTCCAATTCACGCCTCACCCTCCATCCACGATGTCATCTACACTCCTCAAAACACTTCCTTTTTGTCCATCCTTCAATCTTACAACAGAAACCTCCGATTTGAAACTCCACAAACCCCAAACCCTGTGCTGATCATCACGCCTCTCGACGCAACCCAAGTCCAAGCCACCATCGCTTGCGCCAACCCCTTGGGGCTGCAGCTCCGAGTGAGGAGCGGCGGCCATGATTACGAGGGCCTCTCCTATCAAGCTCATGTCCCTTTTGTTCTTCTCGACATGTTCAATCTTCGTAAGATTGATATTTACAAGGATGGCTATGATTACGTTGCGTGGATTGAAGCTGGTGCCATTCTGGGCGAGCTCTACCATCGTATTGCCGAATTCAGTCCAAACCTTGCGTTTCCTGGAGGGGTTTGCTTCACCCTCGGCGTTGGAGGTCATTTCAGCGGCGGTGGCTATGGGAATCTCATGAGAAAATATGGGCTTTCAGTTGATAATATTGTGGATGCTTTGTTTGTTGACGCCACTGGGGCTGTTCTTGATCGTAAGTCGATGGGGGAGGATCTTTTTTGGGCTATTAGAGGAGGTGGCGCTGCCAGTTTCGGGGTTGTTATTTCGTGGAAGATCAAATTGGTGTCAGTCCCTGAAACCGTCACGGTTTTCAACGTGAATCTGAGACCAGAACAAGGCGCACTCGATGTGGCTCATCGATGGCAGTTCGTGGCCCCTAATCTGCCGGACGAATTGTTTATAAGACTAATGCATACCGTAGTGGGTTCAACAACTGAAAAAGGGGAGCTCACAGTGCAAGCTTCGTTCGTTGGTTTGTTCTTGGGAACACCCAAATCGCTCATTCCGATCATGAACAAGAATTTCCCTGAGTTGGGTCTGAAGCAAAGCGATTGCCGCGAAGTAAGATGGGTTGAATCCACCATATTTTGGTACAAGGGCCCCATAGGAAGCAACATTGATATTCTGCTTGAAAGACCCAAAAACGGATCCTATTTCTTCAAGGGCAGGTCGGACTATGTGAAGAAGGCGATCTCGAAGGAAGGGATTCAGGGGATATGGCGGACCATGGTCGGATTGAATTCCACCTCATTGACGATGCAATGGAACCCATACGGCGGAAGAATGTGGGAAATTTCAGAATCTGCAACTCCATTTCCACACAGAGCAGGGAACTTGTATTTGATTCAGTACACGTTGTCGTGGATGAAACAAGGAATGGAATCCACAAACCATTACATGAACATTTCGAGGAGTTTGTACGAATACATGACTCCATTGGTGTCGAGCTCGCCCAGAGAATCGTTTTTAAATTACAGAGACCTTGAGATTGGGGCGAATCCCAGCACTGAAACCAACTACATGGTTGCTGAAGAATACGGGCGGAAGTATTTCAAGGGGAACTTTGATCGGTTGATGAAAGTGAAGACGATGGTGGATCCTCATAATTTCTTCAGAAACGAACAGATTTGCCCCTTCTTCTCCCTTTTCCTCAGATCGGAGAAACTGAATCCAATGGTCGGAGGCTTTGAAGTGGGAGCTGTTCCCTACAACCCGGACGGTTGGGGTCCGCCGGAATCGACTGCCACCCTCGCCGCTTCCTCTAACCTCCCTCTCAATGTCCCCTTTGCCCCATTCTCTCGCTCCGATAAGCTTGGTCGGATCGCCGATTGGACCCGAACAATGAATAACCCTGGTCGCCCCAAGGCTGCTTCGGATTCCGTCTTCGATTTCACTAATGACGATTCCTTCCCGGCCAATGCCGACGAGGACATGTCCTTCCGTTTGGTTGATGGAAAGCCTCCTCCGCGCCCCAAATTTGGCCCTAAATGGCGATTCAACCAGCAAAGGACACAGCTACCTCAGCGCCGTGACGAAGAAGTTGAGGCTCGAAAGCGTGAGGCTGAGAAGGAGCGGGCTCGCCGTGACCGTCTTTACAACCTCAACAGGTCTAATGTCAATGCGACCCGTCGTGAAGCTGCTGTCTTCAAATCCTCTGTGGAAATTCAACCAGAATGGAACATGCTTGATCAGATTCCCTTCTCCACTTTCTCGAAGCTGTCCTTCTCTGTTGCTGAGCCCGAAGACCTTCTTCTGTGCGGCGGGCTAGAGTTCTATGATCGAACAAACGACCGAATCACTCCCAAGAACGAGCGCCGTCTTGAGCGCTTCAAGAACCGCAACTTCTTTAAGGTAACTACTACCGACGATCCTGTCATTCGTCGTCTCGCAAATGAGGACAAAGCCACAGTTTTTGCTACCGATGCCATCCTTTCTACCCTTATGTGCGCAACGAGATCGGTTTATTCCTGGGACATTGTGGTTCAACGTGTTGGGAACAAGCTTTTCTTTGATAAGAGGGATGGGTCGCAACTTGATTTGCTTGCTGTCCACGAGACCTCTCAGGAACCCTTACCAGAGGCGAAGGACGATATCAATTCAGCGTATTCACTGAGTGTCGAAGCTGCTTACATTAATCAGAACTTCTCGCAGCAAGTTTTAGTTAGGGACGGAAATAAGGTGGCCTTTGACGAGCCAAACCCATTTGCAAACGAGGGAGAGGAGGTCGCTTCAGTTGCTTACAGGTATAGGAGGTGGAAACTTGATGATGACATGTATCTTGTGGCCAGGTGCGAGGTTCAAAGTGTTATGGAGGTTAATAAGCAGAGATCATTCTTGACTTTGAATGCTCTTAATGAATTTGATTCCAAGTATTCAGGTGTCGATTGGAGGCAGAAATTGGAGACACAGAGGGGTGCTGTTTTGGCCACAGAGTTGAAGAACAATGCCAATAAATTGGCAAAATGGACAGCTCAAGCCTTATTAGCTAGCGCAGATATGATGAAGTTGGGGTATGTCTCTAGGGTTCATCCTCGTGATCACTTCAACCATGTCATCTTAGCTGTGGTTGGGTATAAACCGAAGGATTTTGCAGCTCAAATTAACTTAAATACGTCTAACATGTGGGGTATTGTCAAATCCATCGTGGATTTGTGCATGAAATTGAATGAAGGTAAGTATGTTTTGGTTAAGGACCCATCCAAACCACAGGTTAGGATCTATGAGGTTCCTGCGGATGCATTTGAGAATGACTATGTTGAGGAGCCACTGGCTGAGGAGGACCAAGTGCAACCTCCAGGAGAAGATGAAAATGGCGCCACTGCTAATGCGGGGACTGATGATGCCGCAGAGAAGGTTGATGCTGCTCAAGCTTAA 3318 48.34 MSPLPLILLLSLPLAFSYETEGSPVQSFVDCLPIHASPSIHDVIYTPQNTSFLSILQSYNRNLRFETPQTPNPVLIITPLDATQVQATIACANPLGLQLRVRSGGHDYEGLSYQAHVPFVLLDMFNLRKIDIYKDGYDYVAWIEAGAILGELYHRIAEFSPNLAFPGGVCFTLGVGGHFSGGGYGNLMRKYGLSVDNIVDALFVDATGAVLDRKSMGEDLFWAIRGGGAASFGVVISWKIKLVSVPETVTVFNVNLRPEQGALDVAHRWQFVAPNLPDELFIRLMHTVVGSTTEKGELTVQASFVGLFLGTPKSLIPIMNKNFPELGLKQSDCREVRWVESTIFWYKGPIGSNIDILLERPKNGSYFFKGRSDYVKKAISKEGIQGIWRTMVGLNSTSLTMQWNPYGGRMWEISESATPFPHRAGNLYLIQYTLSWMKQGMESTNHYMNISRSLYEYMTPLVSSSPRESFLNYRDLEIGANPSTETNYMVAEEYGRKYFKGNFDRLMKVKTMVDPHNFFRNEQICPFFSLFLRSEKLNPMVGGFEVGAVPYNPDGWGPPESTATLAASSNLPLNVPFAPFSRSDKLGRIADWTRTMNNPGRPKAASDSVFDFTNDDSFPANADEDMSFRLVDGKPPPRPKFGPKWRFNQQRTQLPQRRDEEVEARKREAEKERARRDRLYNLNRSNVNATRREAAVFKSSVEIQPEWNMLDQIPFSTFSKLSFSVAEPEDLLLCGGLEFYDRTNDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDAILSTLMCATRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLAVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLVRDGNKVAFDEPNPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVQSVMEVNKQRSFLTLNALNEFDSKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRVHPRDHFNHVILAVVGYKPKDFAAQINLNTSNMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLAEEDQVQPPGEDENGATANAGTDDAAEKVDAAQA 1105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 318886 323197 - CmoCh07G000500.1 Cmo07g00050 385358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00050 1105 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 542 1068 IPR007783 GO:0003743|GO:0005737|GO:0005852
Cmo07g00050 1105 Gene3D - 23 127 IPR016167 -
Cmo07g00050 1105 ProSiteProfiles PCMH-type FAD-binding domain profile. 69 245 IPR016166 GO:0071949
Cmo07g00050 1105 Coils Coil 657 677 - -
Cmo07g00050 1105 Gene3D - 139 523 IPR016169 -
Cmo07g00050 1105 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 543 1098 IPR007783 GO:0003743|GO:0005737|GO:0005852
Cmo07g00050 1105 MobiDBLite consensus disorder prediction 1068 1105 - -
Cmo07g00050 1105 Pfam Berberine and berberine like 469 523 IPR012951 GO:0016491|GO:0050660
Cmo07g00050 1105 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 545 1056 IPR007783 GO:0003743|GO:0005737|GO:0005852
Cmo07g00050 1105 SUPERFAMILY FAD-binding/transporter-associated domain-like 41 246 IPR036318 GO:0050660
Cmo07g00050 1105 Pfam FAD binding domain 75 211 IPR006094 GO:0050660
Cmo07g00050 1105 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT D 543 1098 - -
Cmo07g00050 1105 Gene3D - 248 465 - -
Cmo07g00050 1105 MobiDBLite consensus disorder prediction 653 673 - -
Cmo07g00050 1105 MobiDBLite consensus disorder prediction 627 673 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00050 Cmo-Chr7:318886 Cmo03g01459 Cmo-Chr3:10516289 0 dispersed
Cmo03g01461 Cmo-Chr3:10521434 Cmo07g00050 Cmo-Chr7:318886 0 transposed
Cmo13g00505 Cmo-Chr13:5983604 Cmo07g00050 Cmo-Chr7:318886 2.97E-154 wgd
Cmo18g00496 Cmo-Chr18:3435571 Cmo07g00050 Cmo-Chr7:318886 6.39E-157 wgd
Cmo03g01458 Cmo-Chr3:10512899 Cmo07g00050 Cmo-Chr7:318886 5.89E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00050 K03251 - csv:101208923 1073.54