Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00063 ATGGAACTTGGAAGGCCTGGCTCAGGCAAAAGAAGATTAAGGGACCTATTGCTTCAAAAGGATAATCGCTTCTGTGCAGATTGTCGAGCTTTAGATCCTAGATGGGCGTCATCAAATATTGGAGTTTTTATATGCTTGAAATGCTGTGGTGTTCACAGAAGCCTTGGTTCACATATATCAAAGGTGTTATCAGTGACGTTGGATGAATGGAATGATGATGAAATTGATGCCATGATAGAAATTGGAGGAAATAATTCGGCGAATGCGATTTATGAAGCCTTTATTCCTGAGGGATATTCAAAACCTGGACCGGATGCCACCCATGAACAACGTTCAAAATTCATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCGAACTCCGACAAAAGCAATGTCCAAGCAAACTTTGCTTCAAAGGTCATGAACAGTTTTCGTTCAAATTCTTCACAAAAATCACACTTGCAGAAGGGTATGGTAGAGTTTCTTGGATTATTGAAGGTGAAAGTGATTAAAGGGACAAACTTAGCTATCAGGGATATGATGTCGAGCGATCCGTATGTAGTCTTGACTCTTGGCCAACAGACTGTCCAGACAGGTATAATCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGATGCTATCTGTACCTCAAGCTTTTGGAACCTTAAAGTTGCAAGTATACGACTACGACACGTTTACAGCAGACGACATAATGGGAGAAGCAGAAATTGATCTCCAGCCCTTGATAACATCAGCAATGGCATTTGGGGATGCTGGAATGTTTTCAAACATGCAAATTGGAAAATGGCTGAAATCACACGATAATGCTCTCATAGGCGATAGCACCGTTAATATTGTGGATGGGAAGGTAAAGCAAGAGATATCACTCCAGCTGCAGAACGTGGAATCAGGAGAACTAGATCTAGAGCTAGAATGGATGCCTCTTGGACAATAG 984 41.26 MELGRPGSGKRRLRDLLLQKDNRFCADCRALDPRWASSNIGVFICLKCCGVHRSLGSHISKVLSVTLDEWNDDEIDAMIEIGGNNSANAIYEAFIPEGYSKPGPDATHEQRSKFIRSKYELQEFLKPSLRILSNSDKSNVQANFASKVMNSFRSNSSQKSHLQKGMVEFLGLLKVKVIKGTNLAIRDMMSSDPYVVLTLGQQTVQTGIIRSNLNPVWNEELMLSVPQAFGTLKLQVYDYDTFTADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALIGDSTVNIVDGKVKQEISLQLQNVESGELDLELEWMPLGQ 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 358765 362271 - CmoCh07G000630.1 Cmo07g00063 385371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00063 327 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 326 IPR044518 GO:0005096|GO:0005543
Cmo07g00063 327 CDD C2_ArfGAP 170 314 - -
Cmo07g00063 327 PRINTS C2 domain signature 187 199 IPR000008 -
Cmo07g00063 327 PRINTS C2 domain signature 211 224 IPR000008 -
Cmo07g00063 327 PRINTS C2 domain signature 232 240 IPR000008 -
Cmo07g00063 327 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 138 IPR001164 GO:0005096
Cmo07g00063 327 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 171 315 IPR035892 -
Cmo07g00063 327 CDD ArfGap 13 119 - -
Cmo07g00063 327 SMART C2_3c 172 267 IPR000008 -
Cmo07g00063 327 SUPERFAMILY ArfGap/RecO-like zinc finger 10 127 IPR037278 -
Cmo07g00063 327 ProSiteProfiles C2 domain profile. 153 268 IPR000008 -
Cmo07g00063 327 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 3 326 - -
Cmo07g00063 327 Pfam Putative GTPase activating protein for Arf 11 126 IPR001164 GO:0005096
Cmo07g00063 327 Gene3D C2 domain 170 327 IPR035892 -
Cmo07g00063 327 SMART arf_gap_3 10 132 IPR001164 GO:0005096
Cmo07g00063 327 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Cmo07g00063 327 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Cmo07g00063 327 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Cmo07g00063 327 Pfam C2 domain 171 261 IPR000008 -
Cmo07g00063 327 Gene3D Arf GTPase activating protein 5 131 IPR038508 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00063 Cmo13g00522 CCT
Cmo07g00063 Cmo18g00486 CCT
Cmo03g01445 Cmo07g00063 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02315 Cmo-Chr4:17213598 Cmo07g00063 Cmo-Chr7:358765 1.62E-116 dispersed
Cmo07g00063 Cmo-Chr7:358765 Cmo15g00846 Cmo-Chr15:4284174 2.69E-118 dispersed
Cmo18g00057 Cmo-Chr18:373965 Cmo07g00063 Cmo-Chr7:358765 2.53E-40 dispersed
Cmo13g00522 Cmo-Chr13:6123425 Cmo07g00063 Cmo-Chr7:358765 0 wgd
Cmo18g00486 Cmo-Chr18:3337349 Cmo07g00063 Cmo-Chr7:358765 1.32E-174 wgd
Cmo03g01445 Cmo-Chr3:10467242 Cmo07g00063 Cmo-Chr7:358765 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00063 K12486 - csv:101218116 593.964