Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00064 ATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATAAGCTGCAAAAGTACTCTGAATCTCAGAATCATTCTTCATCAGTCATTAATGGACTAAATCAACCCAGCATCACAGCCTCAAATCAGTATTTAACACCTCTACAAGTTGGAGCAGGACATGCTTTGGCACCCCCTGCTTATCCATATCCAGATCCTTATTATAGAAGCATCTTTTCTCCTTATGATGCTCAACCGTGTCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTGCAGTTGATGGGAATTCAGCAAGCTGGTGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAGCAGTATCATGGCATTTTGCGACGTAGACAGTCCCGTGCAAAGGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGGGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAATGAGAATCAACAAAATGAAGTGGCGTCAGCGCATGCCAGCAATTGTAAGGAAATTGAAGTCCCAATACCAGCTTCAGTTGTGTTAGTAATACTTCATCCTTAG 624 43.11 MTSSVHDYSDNGEADKLQKYSESQNHSSSVINGLNQPSITASNQYLTPLQVGAGHALAPPAYPYPDPYYRSIFSPYDAQPCPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQNEVASAHASNCKEIEVPIPASVVLVILHP 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 362941 366078 + CmoCh07G000640.1 Cmo07g00064 385372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00064 207 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700|GO:0006355
Cmo07g00064 207 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 185 IPR001289 GO:0003700|GO:0006355
Cmo07g00064 207 SMART cbf3 110 171 IPR001289 GO:0003700|GO:0006355
Cmo07g00064 207 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700|GO:0006355
Cmo07g00064 207 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700|GO:0006355
Cmo07g00064 207 Gene3D - 111 172 - -
Cmo07g00064 207 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 185 - -
Cmo07g00064 207 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677|GO:0016602
Cmo07g00064 207 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00064 Cmo-Chr7:362941 Cmo17g00931 Cmo-Chr17:8289609 2.78E-38 dispersed
Cmo03g01443 Cmo-Chr3:10452672 Cmo07g00064 Cmo-Chr7:362941 1.25E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10059 PF02045 CBFB_NFYA 4.20E-26 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00064 K08064 - csv:101205549 312.383