Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00064 ATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATAAGCTGCAAAAGTACTCTGAATCTCAGAATCATTCTTCATCAGTCATTAATGGACTAAATCAACCCAGCATCACAGCCTCAAATCAGTATTTAACACCTCTACAAGTTGGAGCAGGACATGCTTTGGCACCCCCTGCTTATCCATATCCAGATCCTTATTATAGAAGCATCTTTTCTCCTTATGATGCTCAACCGTGTCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTGCAGTTGATGGGAATTCAGCAAGCTGGTGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAGCAGTATCATGGCATTTTGCGACGTAGACAGTCCCGTGCAAAGGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGGGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAATGAGAATCAACAAAATGAAGTGGCGTCAGCGCATGCCAGCAATTGTAAGGAAATTGAAGTCCCAATACCAGCTTCAGTTGTGTTAGTAATACTTCATCCTTAG 624 43.11 MTSSVHDYSDNGEADKLQKYSESQNHSSSVINGLNQPSITASNQYLTPLQVGAGHALAPPAYPYPDPYYRSIFSPYDAQPCPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQNEVASAHASNCKEIEVPIPASVVLVILHP 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 362941 366078 + CmoCh07G000640.1 Cmo07g00064 385372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00064 207 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700|GO:0006355
Cmo07g00064 207 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 185 IPR001289 GO:0003700|GO:0006355
Cmo07g00064 207 SMART cbf3 110 171 IPR001289 GO:0003700|GO:0006355
Cmo07g00064 207 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700|GO:0006355
Cmo07g00064 207 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700|GO:0006355
Cmo07g00064 207 Gene3D - 111 172 - -
Cmo07g00064 207 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 185 - -
Cmo07g00064 207 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677|GO:0016602
Cmo07g00064 207 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00064 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101205549 312.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00064 Cmo-Chr7:362941 Cmo17g00931 Cmo-Chr17:8289609 2.78E-38 dispersed
Cmo03g01443 Cmo-Chr3:10452672 Cmo07g00064 Cmo-Chr7:362941 1.25E-102 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo20g00092 CCT,CST,ECH 1 272 CCAAT-HAP2 Transcription Factor Family AT5G12840 50.7 9.4e-56 214.5
Cmo02g01293 CCT,CST,ECH 18 269 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.9 3.6e-55 212.6
Cmo02g01293 CCT,CST,ECH 105 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.7 2.3e-50 196.8
Cmo11g00859 CCT,CST,ECH 1 239 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.6 5.7e-46 182.2
Cmo10g00972 CCT,CST,ECH 19 255 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.7 5.7e-46 182.2
Cmo07g00064 . 62 173 CCAAT-HAP2 Transcription Factor Family AT2G34720 71.4 1.8e-38 156.4
Cmo07g00064 . 1 175 CCAAT-HAP2 Transcription Factor Family AT1G30500 61.1 1.4e-50 196.8
Cmo03g01443 . 63 200 CCAAT-HAP2 Transcription Factor Family AT1G30500 62.3 9.5e-39 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10059 PF02045 CBFB_NFYA 4.20E-26 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00064 Cmo_Chr07 FPKM 5.6078 6.73146 8.916806 8.946251 7.122833 7.676658 7.351365 11.249911 12.222913 11.556501