Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00065 ATGGCGCTTGTAATGCACAAAGACTCATCAAACCAACAGATGGATACAAGCAAATACGTACGGTATACGCCTGAACAGGTTGAGGCATTAGAGAGAGTCTATGCAGAATGTCCAAAGCCCAGTTCTCTTAGAAGGCAGCAGCTCATTAGAGAGTGCCCAATCCTTTCTAATATTGAGCCCAAACAGATCAAAGTTTGGTTTCAAAACCGCAGATGCCGGGAGAAGCAGAGGAAGGAATCTTCTCGCCTCCAGAGCGTGAACCGAAAGTTGTCTGCGATGAACAAGTTGTTGATGGAGGAGAATGACCGTTTACAGAAGCAGGTGTCCCATTTAGTGTATGAGAATGGATTTATGCGCCAGCAACTGCATAGTACATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCCCAACAACAGCAAAACCCAAATCCTCAGCATTCTAATAGGGATGCAAACAACCCAGCTGGTCTTCTTGCAATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGCAGTGGGGTAGCAGCGCGAGCCTGTGGTCTTGTTAGTCTAGAGCCAATGAAGGTTGCCGAAATTCTTAAAGATCGCCTTTCATGGTATCGTGACTGTCGCTGTCTTAATGTTTTAAGTGTAATCCCTACTGGAAATGGGGGAACAATAGAGCTCATATACATGCAGACTTACGCTCCAACAACATTAGCAGCTGCACGTGACTTCTGGACCATGAGATACACAACAAGTTTAGAAGATGGCAGTCTAGTGGTCTGTGAAAGGTCATTAACCACTTCAAGTGGTGGTCCAGCAGGGCCTCCGCCATCTACTTTTGTGAGAGCTGAAATGCTTCCTAGTGGTTATCTAATACGAGCATGCGAGGGTGGGGGATCTATTATTCACATTGTTGACCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGACCGCTTTACGAGTCATCCAAGATCCTTGCTCAGAAAATGACGATCGCTGCATTGCGTCACATTAGACAAATTGCACAAGAGACTAATGGAGAGATCCAATATAGTGGGGGACGTCAACCAGCTGTATTACGAACGTTTGGTCAGAAACTCTGCAGGGGTTTCAACGATGCTGTTAATGGGTTTGCGGATGATGGTTGGTCAGCTATGAGCAGTGATGGTTTGGAGGATGTGACAATTGTCATAAACTCATCAGCAAACAAGTTACCTGGGTCACAGTATAAAACGTCTATGTATCCCTCTTTTGGTGGAGTGATGTGTGCAAAAGCATCAATGTTGCTTCAGAATGTTCCCCCTGCTTTGCTTATTCGATTCTTGAGGGAGCATCGATCTGAATGGGCTGATTATGGAGTTGATGCCTACTCCGCTGCGAGTTTAAAAGCCAGTCCATATGCTGTTCCATGCGCAAGGCCCGGTGGTTTCCCTAGCAGCCAGGTTATTTTGCCTCTTGCTCACACTGTGGAGCACGAAGAGTTTCTGGAGGTGGTTCGGCTGGAGGGCCTTGCATTCTCCCCTGAAGATGTTGCTTTGGCTGGACGAGATATGTACTTATTGCAGCTCTGTAATGGAGTTGATGAGAATGCAGTTGGAGCTTGTGCTCAGCTTGTGTTTGCGCCTATTGATGAATCTTTTGCCGATGATGTGCCGTTACTTCCTTCTGGTTTTCGTGTCATACCCCTGGATCCAAAAACGGATGAGCCCACTGCTAATCGAACATTGGATTTGGCTTCTACTCTTGAAGTCGGTGCCAACGGTGCACGCTCTGGTGGTGAAGCTGATTTGAGCACCTACAACCTCCGGTCGGTCTTGACTATTGCCTTCCAGTTCACTTTTGAGAATCACTTGCAGGAAAATGTGGCTGCTATGGCTCGACAGTACGTTCGTAGCATTGTGGGGTCTGTTCAGAGGGTTGCTATGGCCATTGCCCCATCACAGTTGAGTTCCAATATTGGACTAAAACCCCTTCCTGGTTCTCCTGAAGCTCTTACTTTGGCTCGATGGATTTGCCGAAGCTACAGGATCCATGTTGGAGCTGAGCTCCTTCAAGCCGATTCCCAGTCTGGGGAGGCCATGTTGAAGCAGCTCTGGCACCACTCAGATGCAATCATGTGTTGCTCCGTCAAAGCCAACGCATCTGCTGTGTTCACCTTTGCCAACCAGGCCGGTCTGGACATGCTTGAAACCACTCTTGTTGGCCTGCAAGATATAATGCTCGACAAAATTCTCGACGAAGCGGGTCGGAAGATCCTCTGTTCTGAATTCCCCAAAATAATGCAGCAGGGATTCACAAATCTGCCGTCTGGCATTTGCGTATCGAGTATGGGTCGTCCTATTTCTTACGAGCAAGGCGTTGCCTGGAAGGTTCTAAATGATGATGATTCCAATCACTGTCTGGCTTTCATGTTCATAAACTGGTCTTTTGTGTGA 2541 47.62 MALVMHKDSSNQQMDTSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGFMRQQLHSTSGTTTDNSCESVVMSGQPQQQQNPNPQHSNRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPMKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVVCERSLTTSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQETNGEIQYSGGRQPAVLRTFGQKLCRGFNDAVNGFADDGWSAMSSDGLEDVTIVINSSANKLPGSQYKTSMYPSFGGVMCAKASMLLQNVPPALLIRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAHTVEHEEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCNGVDENAVGACAQLVFAPIDESFADDVPLLPSGFRVIPLDPKTDEPTANRTLDLASTLEVGANGARSGGEADLSTYNLRSVLTIAFQFTFENHLQENVAAMARQYVRSIVGSVQRVAMAIAPSQLSSNIGLKPLPGSPEALTLARWICRSYRIHVGAELLQADSQSGEAMLKQLWHHSDAIMCCSVKANASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFTNLPSGICVSSMGRPISYEQGVAWKVLNDDDSNHCLAFMFINWSFV 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 369276 374639 + CmoCh07G000650.1 Cmo07g00065 385373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00065 846 CDD homeodomain 18 78 IPR001356 GO:0003677
Cmo07g00065 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 846 - -
Cmo07g00065 846 Coils Coil 83 107 - -
Cmo07g00065 846 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289
Cmo07g00065 846 MobiDBLite consensus disorder prediction 122 159 - -
Cmo07g00065 846 SUPERFAMILY Bet v1-like 167 378 - -
Cmo07g00065 846 CDD bZIP 70 109 - -
Cmo07g00065 846 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Cmo07g00065 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 846 IPR044830 GO:0003700
Cmo07g00065 846 SMART START_1 166 376 IPR002913 GO:0008289
Cmo07g00065 846 SMART HOX_1 15 81 IPR001356 GO:0003677
Cmo07g00065 846 Gene3D - 200 384 IPR023393 -
Cmo07g00065 846 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
Cmo07g00065 846 Pfam START domain 167 374 IPR002913 GO:0008289
Cmo07g00065 846 Gene3D - 9 85 - -
Cmo07g00065 846 Pfam MEKHLA domain 701 845 IPR013978 -
Cmo07g00065 846 CDD START_ArGLABRA2_like 161 377 - -
Cmo07g00065 846 Pfam Homeodomain 18 76 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00065 Cmo13g00523 CCT
Cmo03g01442 Cmo07g00065 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00065 Cmo-Chr7:369276 Cmo08g00692 Cmo-Chr8:4405129 0 dispersed
Cmo13g00523 Cmo-Chr13:6138496 Cmo07g00065 Cmo-Chr7:369276 0 wgd
Cmo03g01442 Cmo-Chr3:10443739 Cmo07g00065 Cmo-Chr7:369276 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10060 PF01852 START 3.10E-49 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00065 K09338 - csv:101210154 1593.94