Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00080 ATGAACAAAGGATTGAGTAGCAGCAAAGCATTTGGTTGTATTGACTTTGGTGCTTCAAATTTGGGGGTCAATAGTTCATTGGTTTTGTTGGATCTCACTGAAATGAGGCTTTCAGCTGCTGGTTTCAGCCCTCAGCCTCCGGAAGGGGAGAAGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTATCTCTACCTGCTGTTGGAAGTCGGGCTGTTTACTTTCCACAGGGTCACAGCGAGCAGAGGATCAACAACTCAACTCATTTTTCTTCAAAATTCAAAATTTGCTTGTTGTCTACCTGCATCTGGAGTTCATTTTTGTTCCTCGTGATCGCTTTTGCTCGATGTTTGGCGGTAGCCATATCAACCAACAAAGAAGTGGATGCCCATATACCAAGTTATCCAAGCTTGCCGCCACAACTTATCTGTCAGCTTCACAATGTTACCATGCATGCAGATATCGAGACGGATGAAGTTTATGCTCAGATGACCTTGCAACCGCTCAGTGCTCAAGAGCAAAAGGAGCCATATCTTCCAGCTGAGTTGGGTGCTCCAAGCAAACAACCGACCAATTATTTTTGTAAAACATTGACAGCAAGTGACACAAGTACGCATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAAAAAGACTTTACTCAACAGCCACCTGCTCAGGAGTTGATGGCAAGGGATCTGCACGATAATGAATGGAAATTTAGGCATATCTTTCGTGGTGAGTTTTGCGAGGTTAACGTTTTAAAAACTGCCTCAACCCCTCGTCTTGCAGCAGTTTTTATGTCTAATTATATTTTCGACGCAGGCCAGCCCAAAAGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCTGTGATCTTTATTTGGTTCGTTTTTATGCCCTTCCTTACTCGATATTTATTCATTCAAATTTATATCATATTCGCAATGCTGGGGTTTCTCAGGAATGAAAAGAATCAATTACTATTGGGGATCCGTCGAGCTAGCCGACCACAAACGATGATGCCCTCATCGGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCCCATGCAGCTGCTACAAATAGTCGGTTCACGATATTTTATAATCCAAGAGCTAGCCCATCAGAGTTCATCATTCCTCTGGCTAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCTGTCGGTATGCGTTTTAGAATGCTATTTGAAACAGAAGAATCAAGTGTTCGTCGATACATGGGCACTATTACTGGCATCAGTGACTTAGATCCTGCTCGATGGCCAAACTCACACTGGCGCTCCGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCGTTGTGGGAGATCGAGCCACTAACAACCTTCCCGATGTATCCATCTCCGTTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTGCCTTCTTTCCATGGTCTCAAAGAGGATGATCTGGGATTGAACTCACAACTAATGTGGCTACGGGGAGACGCTCTAGATCGTGGAATTCAACCTCTGAACCTCCATGGAATCGGAGTTGCACCATGGATGCAGCCGAGGCTCGATGCTTCCATGGTGGGTCTGCAGCCGGAGATATATCAAGCAATGGCTGCTGCGGCACTACAGGAGATGAGAACCGTTGATCCTGCTAAGGCGCAGGCGGCATCGCTTCTTCAGTTCCAACAAACCCAAAATCTTCCCAACAGGCCTGCTACTTTCATGTCACCTCAGATGTTGCAGCAGCCTCCTCAGCCTCCTCAGACTCAGCCTCACCAGACCTTTCTCCAAAATGATCATGAAATCCAACATCTCCCTCATTCTCAGGCCAAAACCCAGCCTACCGTTCTTCGGCAGGAGATGAAGCAACAGACATTCAACAACGAGCAGCAGCAGCAGCAGCAGCAACAGCAGCCACAACAGCAAGTGTTTGATCACCAACAAATTCCGAGTAGCATCTCTACAATGACACAGTTCGGTTCGGTATCCCAATCCCTGCAAACTATTCCTTCATTTTGCAGGCAGCAGAGTTTTTCTGATTCAAATGGCATCCATATGACAAATCCTATCATTTCACCATTGCACAGCCTGTTAGGTTCGTTTCCGCAAGATGAATCGTCTCAGCTGCTTAATCTGCCTAGAACACATCCCATGATACATTCATCTGCGTGGCCATCAAAGCGAGCTGCAATCGATCCTCTTATCTCTTCTGGAAATTCTCAGTTTGTTTATCTCCAAGAGGAAAATATGGGGACAGCTCAGGCTAATATCTCTCAGAATGTTTCTTTGCCGCCGTTTCCTGGTAGAGAGTGTTCATTAGATCAAAGGAATGGTGACCCGCAGAGTAATCTTCTATTTGGTGTCAATATAGAGCCTTCATCTCTTCTAATGCAGAATGGTATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCGATACCGTTTTCGTCCAATTACGTGAATACTGCTGGTACCAACTTCTCTGCCAATCCAGCTGGGACACCTTCCAATTGCATTGAGGATTCGGGTATCTTGCCAAACTTCGTAAAGGTTTACAAGTCGGGGACCTTCGGTAGATCACTGGATATTTCGAAATTCAGTAGCTACCATCAGTTACGCAGTGAGCTCGCTCACAAGTTCAATCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAAAATGACATCCTTCTTCTTGGGGACGATCCCTGGCAGGAGTTTGTCAACAGCGTGTGGTGTATCAAAATACTTTCACCACAGGAAGTGCAGGAGATGGGCAGGGTTGATAGCTATGCCGATAGACAGGAGTCGTCCAGAAATTTGAGTAGCGGGATAACTTCTGTCGGGTCGCTCGAGTACTGA 2979 46.53 MNKGLSSSKAFGCIDFGASNLGVNSSLVLLDLTEMRLSAAGFSPQPPEGEKRVLNSELWHACAGPLVSLPAVGSRAVYFPQGHSEQRINNSTHFSSKFKICLLSTCIWSSFLFLVIAFARCLAVAISTNKEVDAHIPSYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLSAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKDFTQQPPAQELMARDLHDNEWKFRHIFRGEFCEVNVLKTASTPRLAAVFMSNYIFDAGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWFVFMPFLTRYLFIQIYIIFAMLGFLRNEKNQLLLGIRRASRPQTMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFHGLKEDDLGLNSQLMWLRGDALDRGIQPLNLHGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASLLQFQQTQNLPNRPATFMSPQMLQQPPQPPQTQPHQTFLQNDHEIQHLPHSQAKTQPTVLRQEMKQQTFNNEQQQQQQQQQPQQQVFDHQQIPSSISTMTQFGSVSQSLQTIPSFCRQQSFSDSNGIHMTNPIISPLHSLLGSFPQDESSQLLNLPRTHPMIHSSAWPSKRAAIDPLISSGNSQFVYLQEENMGTAQANISQNVSLPPFPGRECSLDQRNGDPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTAGTNFSANPAGTPSNCIEDSGILPNFVKVYKSGTFGRSLDISKFSSYHQLRSELAHKFNLEGELEDPLRSGWQLVFVDRENDILLLGDDPWQEFVNSVWCIKILSPQEVQEMGRVDSYADRQESSRNLSSGITSVGSLEY 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 500794 505922 + CmoCh07G000800.1 Cmo07g00080 385388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00080 992 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 334 967 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo07g00080 992 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 276 310 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo07g00080 992 SUPERFAMILY DNA-binding pseudobarrel domain 267 377 IPR015300 -
Cmo07g00080 992 Pfam AUX/IAA family 875 961 IPR033389 -
Cmo07g00080 992 ProSiteProfiles B3 DNA-binding domain profile. 198 331 IPR003340 GO:0003677
Cmo07g00080 992 MobiDBLite consensus disorder prediction 595 620 - -
Cmo07g00080 992 Pfam Auxin response factor 374 457 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo07g00080 992 ProSiteProfiles PB1 domain profile. 876 960 IPR000270 GO:0005515
Cmo07g00080 992 Gene3D - 874 965 - -
Cmo07g00080 992 PANTHER AUXIN RESPONSE FACTOR 6 123 252 - -
Cmo07g00080 992 PANTHER AUXIN RESPONSE FACTOR 6 35 87 - -
Cmo07g00080 992 PANTHER AUXIN RESPONSE FACTOR 6 334 967 - -
Cmo07g00080 992 PANTHER AUXIN RESPONSE FACTOR 6 276 310 - -
Cmo07g00080 992 CDD B3_DNA 197 311 IPR003340 GO:0003677
Cmo07g00080 992 SUPERFAMILY DNA-binding pseudobarrel domain 183 252 IPR015300 -
Cmo07g00080 992 MobiDBLite consensus disorder prediction 651 673 - -
Cmo07g00080 992 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 123 252 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo07g00080 992 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 87 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo07g00080 992 SMART B3_2 198 325 IPR003340 GO:0003677
Cmo07g00080 992 Gene3D - 412 484 - -
Cmo07g00080 992 Gene3D - 196 349 IPR015300 -
Cmo07g00080 992 SUPERFAMILY CAD & PB1 domains 878 951 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00080 Cmo18g00468 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00080 Cmo-Chr7:500794 Cmo15g00807 Cmo-Chr15:3977365 0 dispersed
Cmo13g00540 Cmo-Chr13:6272616 Cmo07g00080 Cmo-Chr7:500794 0 wgd
Cmo18g00468 Cmo-Chr18:3127927 Cmo07g00080 Cmo-Chr7:500794 1.41E-92 wgd
Cmo03g01425 Cmo-Chr3:10309688 Cmo07g00080 Cmo-Chr7:500794 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00080 - - csv:101210406 1437.55