Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00080 | ATGAACAAAGGATTGAGTAGCAGCAAAGCATTTGGTTGTATTGACTTTGGTGCTTCAAATTTGGGGGTCAATAGTTCATTGGTTTTGTTGGATCTCACTGAAATGAGGCTTTCAGCTGCTGGTTTCAGCCCTCAGCCTCCGGAAGGGGAGAAGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTATCTCTACCTGCTGTTGGAAGTCGGGCTGTTTACTTTCCACAGGGTCACAGCGAGCAGAGGATCAACAACTCAACTCATTTTTCTTCAAAATTCAAAATTTGCTTGTTGTCTACCTGCATCTGGAGTTCATTTTTGTTCCTCGTGATCGCTTTTGCTCGATGTTTGGCGGTAGCCATATCAACCAACAAAGAAGTGGATGCCCATATACCAAGTTATCCAAGCTTGCCGCCACAACTTATCTGTCAGCTTCACAATGTTACCATGCATGCAGATATCGAGACGGATGAAGTTTATGCTCAGATGACCTTGCAACCGCTCAGTGCTCAAGAGCAAAAGGAGCCATATCTTCCAGCTGAGTTGGGTGCTCCAAGCAAACAACCGACCAATTATTTTTGTAAAACATTGACAGCAAGTGACACAAGTACGCATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAAAAAGACTTTACTCAACAGCCACCTGCTCAGGAGTTGATGGCAAGGGATCTGCACGATAATGAATGGAAATTTAGGCATATCTTTCGTGGTGAGTTTTGCGAGGTTAACGTTTTAAAAACTGCCTCAACCCCTCGTCTTGCAGCAGTTTTTATGTCTAATTATATTTTCGACGCAGGCCAGCCCAAAAGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCTGTGATCTTTATTTGGTTCGTTTTTATGCCCTTCCTTACTCGATATTTATTCATTCAAATTTATATCATATTCGCAATGCTGGGGTTTCTCAGGAATGAAAAGAATCAATTACTATTGGGGATCCGTCGAGCTAGCCGACCACAAACGATGATGCCCTCATCGGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCCCATGCAGCTGCTACAAATAGTCGGTTCACGATATTTTATAATCCAAGAGCTAGCCCATCAGAGTTCATCATTCCTCTGGCTAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCTGTCGGTATGCGTTTTAGAATGCTATTTGAAACAGAAGAATCAAGTGTTCGTCGATACATGGGCACTATTACTGGCATCAGTGACTTAGATCCTGCTCGATGGCCAAACTCACACTGGCGCTCCGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCGTTGTGGGAGATCGAGCCACTAACAACCTTCCCGATGTATCCATCTCCGTTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTGCCTTCTTTCCATGGTCTCAAAGAGGATGATCTGGGATTGAACTCACAACTAATGTGGCTACGGGGAGACGCTCTAGATCGTGGAATTCAACCTCTGAACCTCCATGGAATCGGAGTTGCACCATGGATGCAGCCGAGGCTCGATGCTTCCATGGTGGGTCTGCAGCCGGAGATATATCAAGCAATGGCTGCTGCGGCACTACAGGAGATGAGAACCGTTGATCCTGCTAAGGCGCAGGCGGCATCGCTTCTTCAGTTCCAACAAACCCAAAATCTTCCCAACAGGCCTGCTACTTTCATGTCACCTCAGATGTTGCAGCAGCCTCCTCAGCCTCCTCAGACTCAGCCTCACCAGACCTTTCTCCAAAATGATCATGAAATCCAACATCTCCCTCATTCTCAGGCCAAAACCCAGCCTACCGTTCTTCGGCAGGAGATGAAGCAACAGACATTCAACAACGAGCAGCAGCAGCAGCAGCAGCAACAGCAGCCACAACAGCAAGTGTTTGATCACCAACAAATTCCGAGTAGCATCTCTACAATGACACAGTTCGGTTCGGTATCCCAATCCCTGCAAACTATTCCTTCATTTTGCAGGCAGCAGAGTTTTTCTGATTCAAATGGCATCCATATGACAAATCCTATCATTTCACCATTGCACAGCCTGTTAGGTTCGTTTCCGCAAGATGAATCGTCTCAGCTGCTTAATCTGCCTAGAACACATCCCATGATACATTCATCTGCGTGGCCATCAAAGCGAGCTGCAATCGATCCTCTTATCTCTTCTGGAAATTCTCAGTTTGTTTATCTCCAAGAGGAAAATATGGGGACAGCTCAGGCTAATATCTCTCAGAATGTTTCTTTGCCGCCGTTTCCTGGTAGAGAGTGTTCATTAGATCAAAGGAATGGTGACCCGCAGAGTAATCTTCTATTTGGTGTCAATATAGAGCCTTCATCTCTTCTAATGCAGAATGGTATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCGATACCGTTTTCGTCCAATTACGTGAATACTGCTGGTACCAACTTCTCTGCCAATCCAGCTGGGACACCTTCCAATTGCATTGAGGATTCGGGTATCTTGCCAAACTTCGTAAAGGTTTACAAGTCGGGGACCTTCGGTAGATCACTGGATATTTCGAAATTCAGTAGCTACCATCAGTTACGCAGTGAGCTCGCTCACAAGTTCAATCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAAAATGACATCCTTCTTCTTGGGGACGATCCCTGGCAGGAGTTTGTCAACAGCGTGTGGTGTATCAAAATACTTTCACCACAGGAAGTGCAGGAGATGGGCAGGGTTGATAGCTATGCCGATAGACAGGAGTCGTCCAGAAATTTGAGTAGCGGGATAACTTCTGTCGGGTCGCTCGAGTACTGA | 2979 | 46.53 | MNKGLSSSKAFGCIDFGASNLGVNSSLVLLDLTEMRLSAAGFSPQPPEGEKRVLNSELWHACAGPLVSLPAVGSRAVYFPQGHSEQRINNSTHFSSKFKICLLSTCIWSSFLFLVIAFARCLAVAISTNKEVDAHIPSYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLSAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKDFTQQPPAQELMARDLHDNEWKFRHIFRGEFCEVNVLKTASTPRLAAVFMSNYIFDAGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWFVFMPFLTRYLFIQIYIIFAMLGFLRNEKNQLLLGIRRASRPQTMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFHGLKEDDLGLNSQLMWLRGDALDRGIQPLNLHGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASLLQFQQTQNLPNRPATFMSPQMLQQPPQPPQTQPHQTFLQNDHEIQHLPHSQAKTQPTVLRQEMKQQTFNNEQQQQQQQQQPQQQVFDHQQIPSSISTMTQFGSVSQSLQTIPSFCRQQSFSDSNGIHMTNPIISPLHSLLGSFPQDESSQLLNLPRTHPMIHSSAWPSKRAAIDPLISSGNSQFVYLQEENMGTAQANISQNVSLPPFPGRECSLDQRNGDPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTAGTNFSANPAGTPSNCIEDSGILPNFVKVYKSGTFGRSLDISKFSSYHQLRSELAHKFNLEGELEDPLRSGWQLVFVDRENDILLLGDDPWQEFVNSVWCIKILSPQEVQEMGRVDSYADRQESSRNLSSGITSVGSLEY | 992 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 500794 | 505922 | + | CmoCh07G000800.1 | Cmo07g00080 | 385388 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00080 | 992 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 334 | 967 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cmo07g00080 | 992 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 276 | 310 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cmo07g00080 | 992 | SUPERFAMILY | DNA-binding pseudobarrel domain | 267 | 377 | IPR015300 | - | |
Cmo07g00080 | 992 | Pfam | AUX/IAA family | 875 | 961 | IPR033389 | - | |
Cmo07g00080 | 992 | ProSiteProfiles | B3 DNA-binding domain profile. | 198 | 331 | IPR003340 | GO:0003677 | |
Cmo07g00080 | 992 | MobiDBLite | consensus disorder prediction | 595 | 620 | - | - | |
Cmo07g00080 | 992 | Pfam | Auxin response factor | 374 | 457 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cmo07g00080 | 992 | ProSiteProfiles | PB1 domain profile. | 876 | 960 | IPR000270 | GO:0005515 | |
Cmo07g00080 | 992 | Gene3D | - | 874 | 965 | - | - | |
Cmo07g00080 | 992 | PANTHER | AUXIN RESPONSE FACTOR 6 | 123 | 252 | - | - | |
Cmo07g00080 | 992 | PANTHER | AUXIN RESPONSE FACTOR 6 | 35 | 87 | - | - | |
Cmo07g00080 | 992 | PANTHER | AUXIN RESPONSE FACTOR 6 | 334 | 967 | - | - | |
Cmo07g00080 | 992 | PANTHER | AUXIN RESPONSE FACTOR 6 | 276 | 310 | - | - | |
Cmo07g00080 | 992 | CDD | B3_DNA | 197 | 311 | IPR003340 | GO:0003677 | |
Cmo07g00080 | 992 | SUPERFAMILY | DNA-binding pseudobarrel domain | 183 | 252 | IPR015300 | - | |
Cmo07g00080 | 992 | MobiDBLite | consensus disorder prediction | 651 | 673 | - | - | |
Cmo07g00080 | 992 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 123 | 252 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cmo07g00080 | 992 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 35 | 87 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cmo07g00080 | 992 | SMART | B3_2 | 198 | 325 | IPR003340 | GO:0003677 | |
Cmo07g00080 | 992 | Gene3D | - | 412 | 484 | - | - | |
Cmo07g00080 | 992 | Gene3D | - | 196 | 349 | IPR015300 | - | |
Cmo07g00080 | 992 | SUPERFAMILY | CAD & PB1 domains | 878 | 951 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo07g00080 | Cmo18g00468 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00080 | Cmo-Chr7:500794 | Cmo15g00807 | Cmo-Chr15:3977365 | 0 | dispersed | |
Cmo13g00540 | Cmo-Chr13:6272616 | Cmo07g00080 | Cmo-Chr7:500794 | 0 | wgd | |
Cmo18g00468 | Cmo-Chr18:3127927 | Cmo07g00080 | Cmo-Chr7:500794 | 1.41E-92 | wgd | |
Cmo03g01425 | Cmo-Chr3:10309688 | Cmo07g00080 | Cmo-Chr7:500794 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00080 | - | - | csv:101210406 | 1437.55 |