Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00117 ATGGACGTGGGTGAAGAAATTAGGGCAGCTCACAAGAGAGACTTTTTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGACGAGATCAAATCCATGATTAATCATAAGCGACATCGCCTTATAATCAACATTTCCGATCTTCACTCTTTCAGAGATCTTGGTCCCAGGTTTTGCTGCTTTCTTTATTCGGTGCTCAGGAATCCAGGCGAGTACATTCAGCCATTCTGCGATGCAGTCACAGAAACTGCTCGCAGTATTGATCCAAAATATCTCAAGGAGGGAGAGCAAGTTTTGGTGGGTTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCTAGGGAACTTCTCTCTCAGTTCATTGGCTCCATGGTCTGCGTTGAGGGCATTGTCACCAAATGTTCCCTTGTCAGACCAAAAGTTGTCAAAAGTGTTCATTTCTGCCCCACAACCGGTGGTTTTACCAGCCGTGAATACCGTGACATTGCATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGAAAATGGCAACTTGTTGGTTACCGAGTATGGCTTGTGTAGATACAAAGATCATCAGACTTTATCAATGCAAGAAATGCCTGAGAATTCAGCGCCTGGTCAGCTTCCACGAACAGTGGATGTCATAGTCGAGGATGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCAATTGTAGGAATATATAAAGCTCTTCCAGGAAAAAGTAAGGGCAGCGTGAATGGAGTGTTCAGGACTGTTCTTGTAGCTAACAATGTTTCTCTGCTAAACAAAGAGGCAAATGCACCCATATACAGTCCCGAGGACTTGAAGAATATTAAAAAGATAGCTGAAAGAGATGACACATTTGACCTTCTCGGTAATTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCAGTGATACTATTGATGCTTGGTGGAGTGGAGAAGAACTTGAAGAACGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTCGCCAAGTCTCAACTTTTAAGGGCGATCATGAATATTGCACCCTTAGCAATATCCACGACAGGCCGTGGTTCATCTGGCGTTGGGTTAACTGCTGCTGTTACATCAGATCAGGAAACAGGAGAAAGAAGGCTTGAAGCTGGTGCAATGGTTCTTGCTGATAGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAACGCTCGGTGCAGTGTAGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGCTCATTGACACCAACAAAGAATATAGGTCTTCCAGACTCCCTACTCTCTCGATTTGATCTATTGTTTATTGTACTGGATCAAATGGATCCTGATATTGATCGCCATATTTCGGAACATGTGTTACGTATGCACCGGTATCGTTCTGTACTTGATGGAGGAGAGGCTGGGGGCTCGATGTATGGAAGAGAAGATGAAGCTGAGGCTGACACTTCTGTCTTCGTCAAGTATAATAGAATGCTTCATGGAAAGAAGACAGAACGTGGTCGGAAGCGTGATACTCTCACCATCAAGTTTCTCAAGAAGTATATTCATTATGCTAAGCATAGGATACAACCCGACCTAACTGATGAGACTGGAGGAACTCTTCCAATGACTGCCAGAACCCTAGAAACCATTATACGTCTCTCAACTGCTCATGCAAAATTGAAGTTGAGTAGAAAGGTTTCAAAGTCTGATGTTGAAGCTGCCTTGAAAGTTCTTAATTTTGCCATATATCATAAAGAGTTGACTGAAATGGAAGAGCGTGAGCAAGAAAGGGAGAAAGAATTGGAAAGAAAACGCAGAGCTGAGCATCAAACAGTGGAAAATGATGAACCAGAACGAAGTACCAAAAGAAGAGAGGAGAGCTCAAGGACAGACTCCATGGAAATCGATGATCCTCTTACCGAACCTGTACTCAATCTGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTATTTGGTCAGCACATGCGTGCAAACCACCTGGATCTTATATCTATTGCCGACATTGAGAATATCGTTAATGCTGCAGCAGATACTCGTTACACTACAGCTGAAATAATGTTGCTCTTGCAGATGGAAGGAAATCAAATTACGGAAGAAGTTGCAGAGAAACAAAACGATGCAAGGAGAAAGATCTTTGTGGCCGGTGCATCGGGAAGTACTGGAAAAAGGATTGTGGAGCAGTTGCTGGCTAGGGGTTTTGCAGTCAAAGCCGGAGTTCGAGACGTGAGCAAGGCTAAAGCTACTCTTTCCCCAGACAATCCTGCTCTTCAAATCGTGAAAGCGGATGTGACTGAAGGCTCTGCGAAGTTGGCAGAAGCCATAGGTTCCGATTCTGAAGCAGTAATTTGTGCTACAGGCTTTCGCCCAGGCTGGGATTTATTTGCGCCATGGAAGATCGACAATTTTGGCACTGTAAACCTTGTTGAAGCATGCCGTGAGTTGGGCATAAACAGATTTGTTCTCGTCAGTTCCATTTTAGTGAATGGAGCTGCAATGGGGCAGATTCTCAACCCAGCTTATATCTTTCTAAATGTTTTCGGGCTCACCTTGATAGCAAAGCTTCAAGCAGAACGCCACATCAGGAAATCGGGTATTGACTACACAATCATAAGGCCTGGAGGTTTGAAAAATGAGCCTCCCACTGGAAATTTAGTCATGGCAGCAGAAGATACTCTTTATGAAGGAAGCATATCAAGAGATTTAGTTGCAGAAGTAGCTGTTGAGGCATTGGTTCGCCCGGAAGCGTCTTACAAGGTTGTCGAAATAGTTTCTCGCGCTGATGCGCCGAAGCTTTCATATGAGGATCTTTTTGGCTCCATAAAGCAGCGTTAG 2985 44.05 MDVGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKSMINHKRHRLIINISDLHSFRDLGPRFCCFLYSVLRNPGEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDIASNMGLPTGSVYPTRDENGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDVIVEDDLVDCCKPGDRVAIVGIYKALPGKSKGSVNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSMYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDETGGTLPMTARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTEMEEREQEREKELERKRRAEHQTVENDEPERSTKRREESSRTDSMEIDDPLTEPVLNLSAERIEAFNSLFGQHMRANHLDLISIADIENIVNAAADTRYTTAEIMLLLQMEGNQITEEVAEKQNDARRKIFVAGASGSTGKRIVEQLLARGFAVKAGVRDVSKAKATLSPDNPALQIVKADVTEGSAKLAEAIGSDSEAVICATGFRPGWDLFAPWKIDNFGTVNLVEACRELGINRFVLVSSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAERHIRKSGIDYTIIRPGGLKNEPPTGNLVMAAEDTLYEGSISRDLVAEVAVEALVRPEASYKVVEIVSRADAPKLSYEDLFGSIKQR 994
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 655383 662756 - CmoCh07G001170.1 Cmo07g00117 385425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00117 994 Pfam MCM AAA-lid domain 582 623 IPR041562 -
Cmo07g00117 994 SUPERFAMILY Nucleic acid-binding proteins 13 265 IPR012340 -
Cmo07g00117 994 Gene3D - 278 648 IPR027417 -
Cmo07g00117 994 Gene3D - 5 106 - -
Cmo07g00117 994 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 760 975 IPR036291 -
Cmo07g00117 994 Pfam MCM P-loop domain 284 506 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo07g00117 994 ProSitePatterns MCM family signature. 405 413 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cmo07g00117 994 Gene3D - 743 981 - -
Cmo07g00117 994 MobiDBLite consensus disorder prediction 634 680 - -
Cmo07g00117 994 Pfam NAD(P)H-binding 766 963 IPR016040 -
Cmo07g00117 994 MobiDBLite consensus disorder prediction 634 685 - -
Cmo07g00117 994 Gene3D - 142 196 - -
Cmo07g00117 994 PRINTS Mini-chromosome maintenance (MCM) protein family signature 397 411 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo07g00117 994 PRINTS Mini-chromosome maintenance (MCM) protein family signature 449 461 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo07g00117 994 PRINTS Mini-chromosome maintenance (MCM) protein family signature 337 352 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo07g00117 994 PRINTS Mini-chromosome maintenance (MCM) protein family signature 425 438 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo07g00117 994 PRINTS Mini-chromosome maintenance (MCM) protein family signature 476 484 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo07g00117 994 Coils Coil 628 654 - -
Cmo07g00117 994 Gene3D - 116 246 IPR012340 -
Cmo07g00117 994 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 639 IPR027417 -
Cmo07g00117 994 ProSiteProfiles MCM family domain profile. 296 502 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo07g00117 994 PANTHER DNA HELICASE 3 741 - -
Cmo07g00117 994 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 214 226 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cmo07g00117 994 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 498 508 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cmo07g00117 994 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 188 202 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cmo07g00117 994 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 465 475 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cmo07g00117 994 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 3 741 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo07g00117 994 SMART mcm 111 627 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo07g00117 994 SMART AAA_5 338 491 IPR003593 -
Cmo07g00117 994 Pfam MCM N-terminal domain 12 90 IPR027925 -
Cmo07g00117 994 Pfam MCM OB domain 116 246 IPR033762 -
Cmo07g00117 994 CDD SDR_a5 761 976 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01381 Cmo07g00117 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00117 Cmo-Chr7:655383 Cmo17g01008 Cmo-Chr17:8664918 5.88E-109 dispersed
Cmo14g00180 Cmo-Chr14:825597 Cmo07g00117 Cmo-Chr7:655383 3.14E-08 dispersed
Cmo18g00410 Cmo-Chr18:2676288 Cmo07g00117 Cmo-Chr7:655383 4.30E-06 dispersed
Cmo02g00778 Cmo-Chr2:4838010 Cmo07g00117 Cmo-Chr7:655383 6.80E-08 transposed
Cmo03g01382 Cmo-Chr3:10129129 Cmo07g00117 Cmo-Chr7:655383 3.90E-159 transposed
Cmo19g00657 Cmo-Chr19:7073158 Cmo07g00117 Cmo-Chr7:655383 5.83E-27 transposed
Cmo03g01381 Cmo-Chr3:10126473 Cmo07g00117 Cmo-Chr7:655383 9.18E-16 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00117 K02541 - csv:101210889 1336.63