Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00117 | ATGGACGTGGGTGAAGAAATTAGGGCAGCTCACAAGAGAGACTTTTTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGACGAGATCAAATCCATGATTAATCATAAGCGACATCGCCTTATAATCAACATTTCCGATCTTCACTCTTTCAGAGATCTTGGTCCCAGGTTTTGCTGCTTTCTTTATTCGGTGCTCAGGAATCCAGGCGAGTACATTCAGCCATTCTGCGATGCAGTCACAGAAACTGCTCGCAGTATTGATCCAAAATATCTCAAGGAGGGAGAGCAAGTTTTGGTGGGTTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCTAGGGAACTTCTCTCTCAGTTCATTGGCTCCATGGTCTGCGTTGAGGGCATTGTCACCAAATGTTCCCTTGTCAGACCAAAAGTTGTCAAAAGTGTTCATTTCTGCCCCACAACCGGTGGTTTTACCAGCCGTGAATACCGTGACATTGCATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGAAAATGGCAACTTGTTGGTTACCGAGTATGGCTTGTGTAGATACAAAGATCATCAGACTTTATCAATGCAAGAAATGCCTGAGAATTCAGCGCCTGGTCAGCTTCCACGAACAGTGGATGTCATAGTCGAGGATGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCAATTGTAGGAATATATAAAGCTCTTCCAGGAAAAAGTAAGGGCAGCGTGAATGGAGTGTTCAGGACTGTTCTTGTAGCTAACAATGTTTCTCTGCTAAACAAAGAGGCAAATGCACCCATATACAGTCCCGAGGACTTGAAGAATATTAAAAAGATAGCTGAAAGAGATGACACATTTGACCTTCTCGGTAATTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCAGTGATACTATTGATGCTTGGTGGAGTGGAGAAGAACTTGAAGAACGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTCGCCAAGTCTCAACTTTTAAGGGCGATCATGAATATTGCACCCTTAGCAATATCCACGACAGGCCGTGGTTCATCTGGCGTTGGGTTAACTGCTGCTGTTACATCAGATCAGGAAACAGGAGAAAGAAGGCTTGAAGCTGGTGCAATGGTTCTTGCTGATAGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAACGCTCGGTGCAGTGTAGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGCTCATTGACACCAACAAAGAATATAGGTCTTCCAGACTCCCTACTCTCTCGATTTGATCTATTGTTTATTGTACTGGATCAAATGGATCCTGATATTGATCGCCATATTTCGGAACATGTGTTACGTATGCACCGGTATCGTTCTGTACTTGATGGAGGAGAGGCTGGGGGCTCGATGTATGGAAGAGAAGATGAAGCTGAGGCTGACACTTCTGTCTTCGTCAAGTATAATAGAATGCTTCATGGAAAGAAGACAGAACGTGGTCGGAAGCGTGATACTCTCACCATCAAGTTTCTCAAGAAGTATATTCATTATGCTAAGCATAGGATACAACCCGACCTAACTGATGAGACTGGAGGAACTCTTCCAATGACTGCCAGAACCCTAGAAACCATTATACGTCTCTCAACTGCTCATGCAAAATTGAAGTTGAGTAGAAAGGTTTCAAAGTCTGATGTTGAAGCTGCCTTGAAAGTTCTTAATTTTGCCATATATCATAAAGAGTTGACTGAAATGGAAGAGCGTGAGCAAGAAAGGGAGAAAGAATTGGAAAGAAAACGCAGAGCTGAGCATCAAACAGTGGAAAATGATGAACCAGAACGAAGTACCAAAAGAAGAGAGGAGAGCTCAAGGACAGACTCCATGGAAATCGATGATCCTCTTACCGAACCTGTACTCAATCTGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTATTTGGTCAGCACATGCGTGCAAACCACCTGGATCTTATATCTATTGCCGACATTGAGAATATCGTTAATGCTGCAGCAGATACTCGTTACACTACAGCTGAAATAATGTTGCTCTTGCAGATGGAAGGAAATCAAATTACGGAAGAAGTTGCAGAGAAACAAAACGATGCAAGGAGAAAGATCTTTGTGGCCGGTGCATCGGGAAGTACTGGAAAAAGGATTGTGGAGCAGTTGCTGGCTAGGGGTTTTGCAGTCAAAGCCGGAGTTCGAGACGTGAGCAAGGCTAAAGCTACTCTTTCCCCAGACAATCCTGCTCTTCAAATCGTGAAAGCGGATGTGACTGAAGGCTCTGCGAAGTTGGCAGAAGCCATAGGTTCCGATTCTGAAGCAGTAATTTGTGCTACAGGCTTTCGCCCAGGCTGGGATTTATTTGCGCCATGGAAGATCGACAATTTTGGCACTGTAAACCTTGTTGAAGCATGCCGTGAGTTGGGCATAAACAGATTTGTTCTCGTCAGTTCCATTTTAGTGAATGGAGCTGCAATGGGGCAGATTCTCAACCCAGCTTATATCTTTCTAAATGTTTTCGGGCTCACCTTGATAGCAAAGCTTCAAGCAGAACGCCACATCAGGAAATCGGGTATTGACTACACAATCATAAGGCCTGGAGGTTTGAAAAATGAGCCTCCCACTGGAAATTTAGTCATGGCAGCAGAAGATACTCTTTATGAAGGAAGCATATCAAGAGATTTAGTTGCAGAAGTAGCTGTTGAGGCATTGGTTCGCCCGGAAGCGTCTTACAAGGTTGTCGAAATAGTTTCTCGCGCTGATGCGCCGAAGCTTTCATATGAGGATCTTTTTGGCTCCATAAAGCAGCGTTAG | 2985 | 44.05 | MDVGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKSMINHKRHRLIINISDLHSFRDLGPRFCCFLYSVLRNPGEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDIASNMGLPTGSVYPTRDENGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDVIVEDDLVDCCKPGDRVAIVGIYKALPGKSKGSVNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSMYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDETGGTLPMTARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTEMEEREQEREKELERKRRAEHQTVENDEPERSTKRREESSRTDSMEIDDPLTEPVLNLSAERIEAFNSLFGQHMRANHLDLISIADIENIVNAAADTRYTTAEIMLLLQMEGNQITEEVAEKQNDARRKIFVAGASGSTGKRIVEQLLARGFAVKAGVRDVSKAKATLSPDNPALQIVKADVTEGSAKLAEAIGSDSEAVICATGFRPGWDLFAPWKIDNFGTVNLVEACRELGINRFVLVSSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAERHIRKSGIDYTIIRPGGLKNEPPTGNLVMAAEDTLYEGSISRDLVAEVAVEALVRPEASYKVVEIVSRADAPKLSYEDLFGSIKQR | 994 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 655383 | 662756 | - | CmoCh07G001170.1 | Cmo07g00117 | 385425 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00117 | 994 | Pfam | MCM AAA-lid domain | 582 | 623 | IPR041562 | - | |
Cmo07g00117 | 994 | SUPERFAMILY | Nucleic acid-binding proteins | 13 | 265 | IPR012340 | - | |
Cmo07g00117 | 994 | Gene3D | - | 278 | 648 | IPR027417 | - | |
Cmo07g00117 | 994 | Gene3D | - | 5 | 106 | - | - | |
Cmo07g00117 | 994 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 760 | 975 | IPR036291 | - | |
Cmo07g00117 | 994 | Pfam | MCM P-loop domain | 284 | 506 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00117 | 994 | ProSitePatterns | MCM family signature. | 405 | 413 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
Cmo07g00117 | 994 | Gene3D | - | 743 | 981 | - | - | |
Cmo07g00117 | 994 | MobiDBLite | consensus disorder prediction | 634 | 680 | - | - | |
Cmo07g00117 | 994 | Pfam | NAD(P)H-binding | 766 | 963 | IPR016040 | - | |
Cmo07g00117 | 994 | MobiDBLite | consensus disorder prediction | 634 | 685 | - | - | |
Cmo07g00117 | 994 | Gene3D | - | 142 | 196 | - | - | |
Cmo07g00117 | 994 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 397 | 411 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00117 | 994 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 449 | 461 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00117 | 994 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 337 | 352 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00117 | 994 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 425 | 438 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00117 | 994 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 476 | 484 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00117 | 994 | Coils | Coil | 628 | 654 | - | - | |
Cmo07g00117 | 994 | Gene3D | - | 116 | 246 | IPR012340 | - | |
Cmo07g00117 | 994 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 306 | 639 | IPR027417 | - | |
Cmo07g00117 | 994 | ProSiteProfiles | MCM family domain profile. | 296 | 502 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00117 | 994 | PANTHER | DNA HELICASE | 3 | 741 | - | - | |
Cmo07g00117 | 994 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 214 | 226 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
Cmo07g00117 | 994 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 498 | 508 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
Cmo07g00117 | 994 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 188 | 202 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
Cmo07g00117 | 994 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 465 | 475 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
Cmo07g00117 | 994 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 3 | 741 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00117 | 994 | SMART | mcm | 111 | 627 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo07g00117 | 994 | SMART | AAA_5 | 338 | 491 | IPR003593 | - | |
Cmo07g00117 | 994 | Pfam | MCM N-terminal domain | 12 | 90 | IPR027925 | - | |
Cmo07g00117 | 994 | Pfam | MCM OB domain | 116 | 246 | IPR033762 | - | |
Cmo07g00117 | 994 | CDD | SDR_a5 | 761 | 976 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g01381 | Cmo07g00117 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00117 | Cmo-Chr7:655383 | Cmo17g01008 | Cmo-Chr17:8664918 | 5.88E-109 | dispersed | |
Cmo14g00180 | Cmo-Chr14:825597 | Cmo07g00117 | Cmo-Chr7:655383 | 3.14E-08 | dispersed | |
Cmo18g00410 | Cmo-Chr18:2676288 | Cmo07g00117 | Cmo-Chr7:655383 | 4.30E-06 | dispersed | |
Cmo02g00778 | Cmo-Chr2:4838010 | Cmo07g00117 | Cmo-Chr7:655383 | 6.80E-08 | transposed | |
Cmo03g01382 | Cmo-Chr3:10129129 | Cmo07g00117 | Cmo-Chr7:655383 | 3.90E-159 | transposed | |
Cmo19g00657 | Cmo-Chr19:7073158 | Cmo07g00117 | Cmo-Chr7:655383 | 5.83E-27 | transposed | |
Cmo03g01381 | Cmo-Chr3:10126473 | Cmo07g00117 | Cmo-Chr7:655383 | 9.18E-16 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00117 | K02541 | - | csv:101210889 | 1336.63 |