Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00148 ATGTCTGATTCAGCTCAGAAGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAACCGTCAAGTCACTTTCTGTAAGAGACGAAATGGACTTCTCAAAAAGGCTTATGAGCTTTCTGTTCTGTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAACCCGTGGCCGCCTCTATGAGTATGCTAACAACAGCTCTTTACCTTCCACCATTAGTCCAATCCCACTTCATCTCCTTCACATTTCCTCAATACAAACGTCAGTTGAACATAAAGAAACAGAAAGGCTTCAAGAATCAGCCGAAACAGAGAATGGCAATCCGATTCAAAAAGAAACTAAACTGGGGCTTCTTGATTTTAACAAAAATTTTGAATCTTTGACAGCCGCTGTAGCCACTGATGGAAATGGACGGCTGCGATGTACACAGTGTTTGAGACAAAGGGCTTTTACCGCCACTTATGTTTTCCAAGAGTTCTTTTTTTTTAGTTCTTGTGTTGTATCGAGGTGGATAAGAGGCGTGAAGACAACAATTGATAGATACAAAAAGGCATCTTCAAATTCTCCAAACACAGGATCTACTTCTGAAACTAACACTCAGGTACACTTCAATTTCAATTTCGTTACATGTGGAGAAATGGGGGATGTTGTTTCCAGGAACATGCTTGGTGATTCTCTAAGTTCTTTGAGTGTAAAAGATCTGAAAAGTCTTGAAAGCAAACTTGAGAAAGGAATTAGCAGAATTAGATCCAAAAAGGAGTTTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTCAACATGATGGAAGGAGGAGAATTTGAGCTGATGCAATCTCATCCCTACGATCCAAGAGACTTCTTCCAAGTCAACGGCTTACAACACAATCAACAATTGCATAAATTATATAAGTTTGGATTTAAGCTAGAGTTGAACGAGGCGACGAATGTCGATCGGGTAAGCGTCGGAGGGTCCTTGAGCGCTGTAAGCTCTTCTTCCAATAACGGAGTCAACGTAGATGAATCTTGCATCAGGCTGGTCTCTATTGAGTTGATTCACCAGCCCCTTCAGCCTGTTGTTAAACATCTGGTTTGCAGAGTTGTAGCCTTGATTACAAGTTCTCCCATCTGGGCTATTCGCCAGCGAGAATCGACGACTAGTCGAATAGACTTGGGGCATGAAATAGTTGTTAAGGTAATCATTGCTACCCAATCCAACAGAATATATACACCTGCCCAAGGAATCCTGTCTCCCTGTCACATACATACCCATAATCAAAGTCTTGGTAATAATCAAAGAGGGGCCGCGGGGGAAGTCGATGCCGTATGGGAGGCTTACATTGTGTACTTTGGAGAGCATTCCGGAGATAAGTCATGGGAGGAGATAGAAGAGAGGCACCATTCGTATTTGATGTCTGTAAAAGACACTGAAAACGATGCAAAATCCTCTCTTCTGTACAGCTACAAGCACACCATCAATGGGTTTGCTGCCGTGCTTACCCAACAACAAGCCTCCAAACTTTCAGGTGAATTTCAATTGGAGGAAGTGGTGTCTGTAATTGAGAGTAAAAAGTATGGCATGCACACGACAAGGTCGTGGGAGTTCTCTGGGGTTGAAGAAGATAAGCCCAGGCTTAGTGATTTGGTTTCTAAAGCCAAGGCTGGAAAAGATGTGGTGATTGGAATGCTTGACAGTGGTAATTGTGTTTCACTGTTTCTCATAAAGATAATTGGAGCTAGATATTATGTAAAGGGATATGAGCATCATTTTGGTCGTTTAAATGAAACGACGGACTTCCGATCACCGTGCGACATGGACGGCCATGGATCACACACCGCCTCCATTGCAGGTGGCCGGAGGGTCTACAACGTCTCGGCCTTCGGTGGCGTTGCACGGGGCACGGCCTCTGGTGGCGCCCCAGGGGTTCGATTGGCAATATACAAAGTTTGTTGGGCGATTCCCAACCAAATGAAAAGTCTGGGAAACGTTTGTTTCGACACTGACGTGCTGGCCGCCATGGATGATGCCATTTCCGATGGCGTCGACGTTCTCAGCTTGTCCATTGGAAAATCGGATCCGTACAATTACACCGATGACGGAATCGCCATCGGAGCTCTTCATGCCGTTAAAAGGGACATTGTGGTGTCTTGTAGCGCCGGAAATAGTGGGCCTACGCCGTCCACGTTGTCCAATGTTGCACCGTGGATCATCACTGTTGGAGCCAGCACCGTGGATCGGGAATTTTACTCTCCTGTCATCCTCGGAAATGGGTTGAAAATTAAGGGATTGTCGGTGGCGCCGTCCAAATTGAGGAGGAACAAAATGTACCCATTAGTGTATGCTGTCGATATACAAAAGCCACATGTTCCCCGAAACGAATCTGGATCATGTATTGCAGGCTCGCTTTCACACAAGAAAGCCAAAGGAAAGATAGTGTTGTGCTACAGAGGACAAGGAATCAGCAGATACGCCGGCAGCCTGGAAGTGAAAAGGTCCGGCGGTGCTGGAATGATACTCGGGCTCGTGCCGGCGGTGGGAGCGAGGCTGCACGCGGATCCCCATTTTGTTCCGGCAACGGCGGTGTCTTACGACGATGCAAATAGGATCCTTAAATATATAAAATCTCACCGTAATCCAACCGCCACTATTGTTCCACCCATCACCATCTACGGCTCCAGGCCGGCGCCGGCCATGGCCAATTTCACAAGTAGAGGTCCAAGCCTCGTCGACCCTCATTTTCTCAAGCCTGACATAACAGCACCTGGAGTGGACATATTAGCAGCATGGTCAGAAAAAGATTCCCCGACAAAACTCCCAAAATCCTTTGACCCTCGTATTGTGAAATACAATATCTACTCCGGCACTTCCATGTCCTGCCCTCACGTCTCCGCCGCCGCTGCCCTCCTCCGCGCCATCCACCCCACTTGGTCCCAAGCCGCCATCCGCTCAGCCCTGATGACCACCGCCACCACCACCAACAAATACGGCCACCCCATCACCGACGACTCCACCACCGACAACTCCCCTGCCACTCCTTTCTCCTTTGGGTCTGGCCACTTCCGCCCCACTAAGGCTGCGGACCCCGGGCTTGTGTACGACGCCAATTACACGGACTATCTCCACTACCTCTGCGGCCTGAAAATGAACTCCATTGACCGCTCCTTCAAGTGCCCTCCACGTGCCCTCCACCCCCACGATCTGAATTACCCTTCCATTGCTATCCCTAAACTGAAAGGCGGTGTGAGGATCAAAAGGACGGTGACCAACGTGGGCGGGGGAGGTAAAAGTGTGTACTTTTTCGAGAGCTGGGCGCCTCCGGGCGTGGCGGTGAGGGCTTCTCCCAGTGTATTGTACTTCGATAGGGTTGGGCAGAGGAAAAGGTTCACGATTACGGTGAGTGGGAAAGTGAAGGGTAATGGATACTCCTTCGGTTGGTTCGCTTGGAGTGATGGGGTTCACTATGTCAGAAGCCCAATTGCAATTTCTTCAACCTAA 3528 47.85 MSDSAQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSSLPSTISPIPLHLLHISSIQTSVEHKETERLQESAETENGNPIQKETKLGLLDFNKNFESLTAAVATDGNGRLRCTQCLRQRAFTATYVFQEFFFFSSCVVSRWIRGVKTTIDRYKKASSNSPNTGSTSETNTQVHFNFNFVTCGEMGDVVSRNMLGDSLSSLSVKDLKSLESKLEKGISRIRSKKEFDLHNNNQLLRAKIAESERNVNMMEGGEFELMQSHPYDPRDFFQVNGLQHNQQLHKLYKFGFKLELNEATNVDRVSVGGSLSAVSSSSNNGVNVDESCIRLVSIELIHQPLQPVVKHLVCRVVALITSSPIWAIRQRESTTSRIDLGHEIVVKVIIATQSNRIYTPAQGILSPCHIHTHNQSLGNNQRGAAGEVDAVWEAYIVYFGEHSGDKSWEEIEERHHSYLMSVKDTENDAKSSLLYSYKHTINGFAAVLTQQQASKLSGEFQLEEVVSVIESKKYGMHTTRSWEFSGVEEDKPRLSDLVSKAKAGKDVVIGMLDSGNCVSLFLIKIIGARYYVKGYEHHFGRLNETTDFRSPCDMDGHGSHTASIAGGRRVYNVSAFGGVARGTASGGAPGVRLAIYKVCWAIPNQMKSLGNVCFDTDVLAAMDDAISDGVDVLSLSIGKSDPYNYTDDGIAIGALHAVKRDIVVSCSAGNSGPTPSTLSNVAPWIITVGASTVDREFYSPVILGNGLKIKGLSVAPSKLRRNKMYPLVYAVDIQKPHVPRNESGSCIAGSLSHKKAKGKIVLCYRGQGISRYAGSLEVKRSGGAGMILGLVPAVGARLHADPHFVPATAVSYDDANRILKYIKSHRNPTATIVPPITIYGSRPAPAMANFTSRGPSLVDPHFLKPDITAPGVDILAAWSEKDSPTKLPKSFDPRIVKYNIYSGTSMSCPHVSAAAALLRAIHPTWSQAAIRSALMTTATTTNKYGHPITDDSTTDNSPATPFSFGSGHFRPTKAADPGLVYDANYTDYLHYLCGLKMNSIDRSFKCPPRALHPHDLNYPSIAIPKLKGGVRIKRTVTNVGGGGKSVYFFESWAPPGVAVRASPSVLYFDRVGQRKRFTITVSGKVKGNGYSFGWFAWSDGVHYVRSPIAISST 1175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 816489 829416 - CmoCh07G001480.1 Cmo07g00148 385456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00148 1175 CDD Peptidases_S8_3 536 1001 IPR034197 -
Cmo07g00148 1175 PRINTS Subtilisin serine protease family (S8) signature 566 585 IPR015500 -
Cmo07g00148 1175 PRINTS Subtilisin serine protease family (S8) signature 615 628 IPR015500 -
Cmo07g00148 1175 PRINTS Subtilisin serine protease family (S8) signature 964 980 IPR015500 -
Cmo07g00148 1175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Cmo07g00148 1175 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 586 1172 IPR045051 -
Cmo07g00148 1175 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 448 577 IPR045051 -
Cmo07g00148 1175 Gene3D - 21 81 IPR036879 GO:0003677|GO:0046983
Cmo07g00148 1175 Pfam Fibronectin type-III domain 1077 1172 IPR041469 -
Cmo07g00148 1175 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.6 586 1172 - -
Cmo07g00148 1175 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.6 448 577 - -
Cmo07g00148 1175 MobiDBLite consensus disorder prediction 1007 1025 - -
Cmo07g00148 1175 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Cmo07g00148 1175 ProSitePatterns Serine proteases, subtilase family, serine active site. 965 975 IPR023828 -
Cmo07g00148 1175 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Cmo07g00148 1175 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Cmo07g00148 1175 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Cmo07g00148 1175 ProSiteProfiles Serine proteases, subtilase domain profile. 543 1037 - -
Cmo07g00148 1175 Pfam Peptidase inhibitor I9 457 536 IPR010259 -
Cmo07g00148 1175 Gene3D Peptidase S8/S53 domain 548 1050 IPR036852 GO:0004252|GO:0006508
Cmo07g00148 1175 MobiDBLite consensus disorder prediction 1007 1026 - -
Cmo07g00148 1175 CDD PA_subtilisin_like 763 894 - -
Cmo07g00148 1175 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Cmo07g00148 1175 CDD MADS_MEF2_like 10 69 IPR033896 GO:0000977|GO:0045944
Cmo07g00148 1175 Pfam Subtilase family 566 1029 IPR000209 GO:0006508|GO:0008236
Cmo07g00148 1175 Pfam K-box region 221 281 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo07g00148 1175 SUPERFAMILY Subtilisin-like 541 1041 IPR036852 GO:0004252|GO:0006508
Cmo07g00148 1175 Gene3D - 1054 1175 - -
Cmo07g00148 1175 Gene3D - 756 901 - -
Cmo07g00148 1175 SUPERFAMILY SRF-like 10 75 IPR036879 GO:0003677|GO:0046983
Cmo07g00148 1175 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 446 539 IPR037045 -
Cmo07g00148 1175 Pfam PA domain 787 880 IPR003137 -
Cmo07g00148 1175 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00148 Cmo-Chr7:816489 Cmo19g00850 Cmo-Chr19:8248897 1.78E-178 dispersed
Cmo17g01378 Cmo-Chr17:10700561 Cmo07g00148 Cmo-Chr7:816489 3.05E-25 dispersed
Cmo13g00604 Cmo-Chr13:6645765 Cmo07g00148 Cmo-Chr7:816489 2.55E-30 wgd
Cmo03g01352 Cmo-Chr3:9999265 Cmo07g00148 Cmo-Chr7:816489 1.07E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10065 PF00082 Peptidase_S8 4.50E-42 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00148 - - csv:101217410 1229.54