Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00155 ATGGCTGAGATTTCAGGACCCAGCAATGGCCACCACAGTGTTCCTCTGAACATCAAAGATGAACCCACACCCCTCACTGCCACACAACCACTCGACTGTATCTCTGTTCCTTTCATTCAAAAGTTGATCGCCGAAGTTTTAGGGACATATTTCTTGATATTTGCTGGTGGAGCATCAGTGGTTGTGAATTTGAGCAAAGACAAAGTCGTCACTTTCCCAGGGATTTCAATTGTTTGGGGTTTGGTTGTAATGGTGATGGTCTATTCTGTCGGCCACATCTCTGGTGCTCATTTTAACCCTGCTGTCACCATAGCCTTTGCCACCACCAAGAGATTTACATGGAAACAGGTGCCAGCTTATGTGATAGCTCAAATTCTTGGATCAACATTGGCAAGTGGGACACTTAGGCTAATCTTTAATGGAGAAGAAGACCACTTTTCAGGGACTCTCCCAAGTGACTCATATTTGCAGACCTTTGTCATTGAATTCATCATCACATTTTACCTTATGTTTGTGGTCTCTGGCGTTGCCACTGACAATAGAGCCATTGGTGAACTTGCTGGACTTGCCGTCGGCGCCACGGTGCTTCTCAACGTCATGTTTGCAGGGCCAATTACAGGAGCGTCCATGAACCCAGCCAGAAGCTTGGGGCCTGCAATAGTGTCAAGGCAGTTCAAAGGGTTGTGGATATACATCGTGGCTCCCATTTTGGGGGCAATTTCAGGTGCTTTGGTCTACAACACCATCAGCATTCTTCTTCAAACCAATCAATCCAATTTCAAAGCTTCAACCAAATCAATCATGGCAGAGAGTTCAGCTTCCAACAATGAACGCCACAGTCTTTCTATGAGTGTCGAAGATGATTCGGCATCCGATTGTGTCTCTGTACTTTTCATTCAGAAGTTGATTGCAGAGGTTATGGGGACATATTTCGTGATATTTGCAGGCGAAGCATCAGTGGTTGTGAATTTGAGCAAAGATGGAGTCATCACTTTCCCAGGGATTTCAATTGTTTGGGGTTTGGTTGTAATGGTGATGATCTATTCCGTTGGCCACATTTCCGGTGCTCATTTTAACCCTGCTGTCACCATATCCTTTGCCATTACCAGAAGATTTCCATGGAGTGAGGTGCCTTCATATCTGGCGGCTCAAGTTCTTGGATCAACATTAGCAAGTTGGACACTCAGGCTAATTTTTAATGGAAAACAAGACCACTTTCCAGGAACTCTCCCAAGCGACTCATACATGCAGACCTTTGTCATTGAATTCATAATCACATTCTACCTCATGTTTGTGGTTTCTGGTGTTGCCACTGACAATAGAGCCATTGGTGAACTTGCTGGACTCGCTGTTGGTGCTACCGTGCTGCTGAACGTGATGGTTGCAGGGCCAATTACAGGAGCATCCATGAATCCAGCCAGAAGCTTGGGGCCTGCATTAGTGTTTGCACAATTCAAAGGATTATGGATTTACATGACAGCACCTATTCTAGGAGCAATATCAGGTGCGTTAGTGTATAATACCATCAGGTTCACAGACAAACCTCTACGAGAGATCGCTCGAAGTGCCTCGTTCCTCAAAAGTCGTCATGTCACCCCATGA 1602 45.38 MAEISGPSNGHHSVPLNIKDEPTPLTATQPLDCISVPFIQKLIAEVLGTYFLIFAGGASVVVNLSKDKVVTFPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATTKRFTWKQVPAYVIAQILGSTLASGTLRLIFNGEEDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPILGAISGALVYNTISILLQTNQSNFKASTKSIMAESSASNNERHSLSMSVEDDSASDCVSVLFIQKLIAEVMGTYFVIFAGEASVVVNLSKDGVITFPGISIVWGLVVMVMIYSVGHISGAHFNPAVTISFAITRRFPWSEVPSYLAAQVLGSTLASWTLRLIFNGKQDHFPGTLPSDSYMQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMVAGPITGASMNPARSLGPALVFAQFKGLWIYMTAPILGAISGALVYNTIRFTDKPLREIARSASFLKSRHVTP 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 845702 849621 - CmoCh07G001550.1 Cmo07g00155 385463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00155 533 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Cmo07g00155 533 TIGRFAM MIP: MIP family channel proteins 44 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00155 533 TIGRFAM MIP: MIP family channel proteins 304 506 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00155 533 Pfam Major intrinsic protein 35 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00155 533 Pfam Major intrinsic protein 295 506 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00155 533 CDD MIP 300 509 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00155 533 ProSitePatterns MIP family signature. 357 365 IPR022357 -
Cmo07g00155 533 SUPERFAMILY Aquaporin-like 295 517 IPR023271 -
Cmo07g00155 533 Gene3D Glycerol uptake facilitator protein. 283 520 IPR023271 -
Cmo07g00155 533 PANTHER AQUAPORIN NIP2-1 265 529 IPR034294 -
Cmo07g00155 533 CDD MIP 40 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00155 533 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00155 533 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00155 533 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00155 533 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00155 533 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00155 533 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00155 533 PANTHER AQUAPORIN NIP1-1-RELATED 3 252 - -
Cmo07g00155 533 SUPERFAMILY Aquaporin-like 34 253 IPR023271 -
Cmo07g00155 533 Gene3D Glycerol uptake facilitator protein. 32 264 IPR023271 -
Cmo07g00155 533 PANTHER AQUAPORIN NIP2-1 3 252 IPR034294 -
Cmo07g00155 533 PANTHER AQUAPORIN NIP1-1-RELATED 265 529 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01346 Cmo07g00155 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00155 Cmo-Chr7:845702 Cmo14g00596 Cmo-Chr14:3016805 2.93E-66 dispersed
Cmo01g00374 Cmo-Chr1:1828717 Cmo07g00155 Cmo-Chr7:845702 9.90E-89 transposed
Cmo14g01724 Cmo-Chr14:13485448 Cmo07g00155 Cmo-Chr7:845702 3.80E-37 transposed
Cmo03g01346 Cmo-Chr3:9977225 Cmo07g00155 Cmo-Chr7:845702 4.12E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00155 K09874 - csv:101219297 424.861