Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00166 ATGATGTCCAAATCGTATACAAATCTTTTAGATTTAGCTTCAGGGAATTTTCCCATCATGGGTCGTGAGAAGAAGCGACTTCCACGAGTAATGACTGTTGCAGGGGTAATATCAGAGCTTGATGATGACCAGGCAAACAGTGTGACTTCTGAGGGACCTTCCTCAGTTGTGCAAGACCGTATAATTATTGTTGCCAATCAGCTTCCTATTAAAGCGAAGCGTAGACCGGATAATAAAGGCTGGAGTTTTAGTTGGGATGAAGACTCTTTGTTGTGGCAGCTCAAGGATGGTTTGCCGGAAGATATGGAGGTTTTGTATGTAGGATCTTTGCAGGTGGATGTTGATTCTTCCGAACAAGATGATGTATCACAGCTTTTGTTGGAGAGGTTTAAGTGTGTTCCTGCGTTTTTGCCTAAAGAAATTTTATCTAAATTTTATCATGGTTTTTGCAAGCAGCAATTGTGGCCACTCTTCCATTATATGCTTCCGTTCTCAGCAACTCATGGTGGTCGGTTCGATCGGTCTCTGTGGGAAGCATATGTAGCAGCTAATAAAATATTTTCTCAAAGGGTCATTGAGGTCATAAACCCAGATGATGACTTTTTATGGATTCATGATTACCATTTGATGGTGCTGCCCACCTTTTTGAGGAGAAGGTTTACAAGATTGAGAATGGGCTTTTTTCTTCACAGTCCATTTCCTTCATCAGAAATATATAGGACTTTGCCAGTGAGGGAAGAGATTCTTAAGGCTCTTTTGAATTCAGACCTTATTGGTTTTCACACTTTTGACTATGCTCGACATTTCCTGTCTTGTTGTAGTCGAATGTTGGGTTTGGAATATCAATCAAAGAGGGGTTATATTGGGTTGGAATATTTTGGAAGGACCGTGGGGATAAAGATCATGCCTGTCGGAATTCACATGGGCCAGATGGAGTCAGTGTTAAGGCTGGCCGATAAAGATTGGAGGGTACAGGAGCTCAAGCGACAATTTGAAGGAAAAGTTGTCTTACTTGGAGTTGATGACATGGACATTTTTAAAGGGGTCAATCTGAAGTTGTTGGCAATGGAACAAATGCTAAGGCAACATCCAAAGTGGCAGGGTAGAGCTGTTTTTGTACAGATTGCAAACCCAGCTAGAGGAGGAGGGAAAGATCTTGAGGAAATACAAGATGAAATACGGGAATGCTGCAAGAGAATTAATGACTGTTTTGGACAGCAAAATTATGAACCAATTGTGTTCATTGATCGGCCTGTTTCTCTCACTGAGAGAGCTGCATATTATACCATTGCCGAATGTGTTGTAGTTACAGCGGTGAGGGATGGAATGAACCTAACTCCTTATGAATATGTTGTCTGCAGGCAGGGAACCTCTGGATCAGATTATAGCACGGAAACAAATGGACCACAAAAAAGCATGCTAGTCATATCAGAGTTCATGGGATGTTCCCCTTCTCTCAGTGGTGCAATGCGGGTTAATCCATGGAACATTGAAGCTACTGCCGAAGCATTGAATGAGGCAATATCAATGGCTGATGCTGAGAAGCAATTGCGCCATGAAAAGCATTACAAGTATGTGAGTACTCATGATGTGGCATACTGGTCAAAGAGTTTCTTCCAAGATATGGAAAGAACTTGTAAGGATCACTTCAGAAAACGGTGCTGGGGAATTGGGTTGGGCTTTGGATTCAGAGTTGTAGCACTTGATCCTAACTTTAAAAAGTTGTCTATTGATGCCATTGTTGCTGAATATTCAAGGTCTAAAAGGAGGGCTATACTATTGGATTACGATGGCACTGTCATGCCACAAACTTCAATTGATAAGACCCCAAGTAATCAAGTTATTTCAATCATAGATTCACTTTGCGATGATGTTAGGAATACTGTTTTTGTTGTCAGTGGAAGAGGGCGTGAAAGTTTGGGCAACTGGTTTTCTTCTTGCGATAAACTTGGGATTGCTGCAGAGCATGGCTATTTTATGAGGTGGTCTGCTGATAAGGATTGGGAGAATTGTGGTCAAGGTAGTGATTTTGGCTGGATACAGATCGCAGAGCCAGTCATGAAATTATATACAGAAGCTACTGATGGCTCTTCCATTGAAACCAAGGAAAGTGCCTTGGTGTGGCACCACCAGGATGCCGACCCTGATTTTGGTTGCAGCCAGGCCAAGGAACTGTTAGATCATCTCGAAAGTGTGCTTGCAAATGAACCAGTTGCTGTAAAAAGTGGTCAGTTCATTGTAGAAGTGAAGCCACAGGGGGTTAGTAAAGGTGTGGTGGCAGAAAAGATTTTCACATCAATGGCCAATGCAGGCAGACGGGCCGATTTTGTGCTATGCATTGGTGATGATAGATCTGATGAAGACATGTTTGAGATCATTGGCAATGCAGTATCAAGTGGCGTCCTCTCTTCCAATACATCAGTTTTTGCATGCACAGTTGGACAGAAACCAAGCAAGGCCAAGTATTACTTGGATGATACAACTGAGGTCATAAACATGCTTGAAGCCCTTGCAGAAGTTTCTGACATTTCTTCTCCTCCAGAATCCCCTTGA 2553 42.34 MMSKSYTNLLDLASGNFPIMGREKKRLPRVMTVAGVISELDDDQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSFSWDEDSLLWQLKDGLPEDMEVLYVGSLQVDVDSSEQDDVSQLLLERFKCVPAFLPKEILSKFYHGFCKQQLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFLWIHDYHLMVLPTFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELKRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLRQHPKWQGRAVFVQIANPARGGGKDLEEIQDEIRECCKRINDCFGQQNYEPIVFIDRPVSLTERAAYYTIAECVVVTAVRDGMNLTPYEYVVCRQGTSGSDYSTETNGPQKSMLVISEFMGCSPSLSGAMRVNPWNIEATAEALNEAISMADAEKQLRHEKHYKYVSTHDVAYWSKSFFQDMERTCKDHFRKRCWGIGLGFGFRVVALDPNFKKLSIDAIVAEYSRSKRRAILLDYDGTVMPQTSIDKTPSNQVISIIDSLCDDVRNTVFVVSGRGRESLGNWFSSCDKLGIAAEHGYFMRWSADKDWENCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESALVWHHQDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGVVAEKIFTSMANAGRRADFVLCIGDDRSDEDMFEIIGNAVSSGVLSSNTSVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 878233 883020 - CmoCh07G001660.1 Cmo07g00166 385474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00166 850 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Cmo07g00166 850 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0003824|GO:0005992
Cmo07g00166 850 CDD HAD_TPP 591 832 - -
Cmo07g00166 850 Gene3D Glycogen Phosphorylase B; 321 528 - -
Cmo07g00166 850 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Cmo07g00166 850 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 798 IPR006379 -
Cmo07g00166 850 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 7-RELATED 1 842 - -
Cmo07g00166 850 SUPERFAMILY HAD-like 590 838 IPR036412 -
Cmo07g00166 850 Gene3D - 719 845 IPR023214 -
Cmo07g00166 850 Gene3D - 589 695 IPR023214 -
Cmo07g00166 850 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 842 IPR001830 GO:0003824|GO:0005992
Cmo07g00166 850 Gene3D Glycogen Phosphorylase B; 50 320 - -
Cmo07g00166 850 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Cmo07g00166 850 TIGRFAM T6PP: trehalose-phosphatase 587 838 IPR003337 GO:0003824|GO:0005992
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01337 Cmo07g00166 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00166 Cmo-Chr7:878233 Cmo16g01224 Cmo-Chr16:8764732 0 dispersed
Cmo11g01986 Cmo-Chr11:13631629 Cmo07g00166 Cmo-Chr7:878233 0 wgd
Cmo19g01042 Cmo-Chr19:9093586 Cmo07g00166 Cmo-Chr7:878233 0 wgd
Cmo03g01337 Cmo-Chr3:9942083 Cmo07g00166 Cmo-Chr7:878233 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00166 K16055 - csv:101213082 1653.65