Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00176 ATGGCCGACCGGCCGGACACCGACAAGAAGACCGAGACTACCAAGAAGGACATGCCGGCTCTTCTTTTGGGCCGATACGAGATCGGGAAGCTCCTTGGTCACGGCACCTTCGCTAAGGTCTACCATGCCCGGAACATTAAAACCGACCAAAGTGTCGCCATTAAAGTTATCGACAAGGAGAAGATCCTCAAGGGTGGTCTAATCGCCCACATCAAACGCGAGATCTCTATCCTCCGCCGCGTTCGACACCCCAATATCGTCCAACTCTTTGAGGTTATGGCCACCAAGGCCAAGATCTACTTCGTTATGGAATATGTACGCGGCGGCGAGCTTTTCAAGAAGGTCTCCAAGGGCCGATTGAAGGAAGAGGTTGCTCGGAAGTACTTTCAGCAATTAATCTCCGCCGTTGCCTTTTGCCATGCGCGCGGTGTTTTTCATCGCGACCTTAAACCGGAGAATTTGTTGCTGGATGAAAATGGGAATCTTAAGGTCTCCGATTTCGGCCTTAGTGCCGTGTCCGACCAAATTCGACAAGATGGGTTGTTTCATACTTTTTGTGGTACACCGGCGTATGTTGCTCCGGAGGTTTTGACCCGGAAAGGGTACGAGGCCGCAAAGGTAGATATTTGGTCCTGTGGGGTTATTCTGTTTGTTCTGATGGCCGGCTATCTGCCCTTCCACGACCAAAATATTATGGCAATGTATAAGAAGATTTACAGGGGTGAGTTCCGTTGTCCGAGATGGTTTTCCCCGGAGCTAATTCGACTCCTATCTCGTCTTTTGGACACAAACCCCGAAACCCGTTTCACAATTCCAGAAATCATGGAGAATAGATGGTTCAAAAAGGGTTACAAGCATATCAAATTCTACATCGAAGATGATAAGGTTTGCAGCGTTGAGGACGACCAAAACGATGTCGATATTATCGATTCCTCGTCGGATCAATCTCAATCCGAATCGGATTCCGAAATAATTGAGACCAGAAGAAAGGTTAGTACACTCCCAAGACCGGCGAGTTTGAATGCATTTGACATCATTTCGTTCTCGCCTGGATTTGATCTTTCGGGGTTGTTTGAGGACGGAGGGGAAGAGGCAAGATTTGTGTCCAGTGCGCCGGTGTCGAAGATCATATCGAAATTGGAGGAGATCGCAAAATTGGTGAGTTTCACGGTGAGGAAGAAGGATTGCAGAGTGAGTTTAGAAGGGTCGCGGGAAGGAGTAAAAGGGCCATTGACGATCGCAGCAGAGGTATTCGAGTTGACGCAGAAATTAGTGATGGTGGAGGTGAAGAGGAAAGGGGGAGATAAAGCAGAGTATGAACAGTTCTGTAACGAGGAATTGAAACCGGCATTGTTGAATTTGAAGGTGGAGGTGGAGGACTCTGCTGCCGCTCCATCATCACATATACCATCAGATACCGAATGA 1425 48.35 MADRPDTDKKTETTKKDMPALLLGRYEIGKLLGHGTFAKVYHARNIKTDQSVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVAFCHARGVFHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLTRKGYEAAKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYRGEFRCPRWFSPELIRLLSRLLDTNPETRFTIPEIMENRWFKKGYKHIKFYIEDDKVCSVEDDQNDVDIIDSSSDQSQSESDSEIIETRRKVSTLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSSAPVSKIISKLEEIAKLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEVFELTQKLVMVEVKRKGGDKAEYEQFCNEELKPALLNLKVEVEDSAAAPSSHIPSDTE 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 930218 931642 + CmoCh07G001760.1 Cmo07g00176 385484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00176 474 CDD STKc_SnRK3 25 279 - -
Cmo07g00176 474 PANTHER - 17 465 - -
Cmo07g00176 474 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 17 465 - -
Cmo07g00176 474 CDD CIPK_C 341 451 - -
Cmo07g00176 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Cmo07g00176 474 Pfam NAF domain 337 393 IPR004041 GO:0007165
Cmo07g00176 474 Gene3D Transferase(Phosphotransferase) domain 1 17 337 - -
Cmo07g00176 474 ProSiteProfiles NAF domain profile. 335 359 IPR018451 GO:0007165
Cmo07g00176 474 SMART serkin_6 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00176 474 MobiDBLite consensus disorder prediction 308 328 - -
Cmo07g00176 474 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00176 474 Gene3D Kinase associated domain 1, KA1 338 455 - -
Cmo07g00176 474 SUPERFAMILY Protein kinase-like (PK-like) 22 292 IPR011009 -
Cmo07g00176 474 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Cmo07g00176 474 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01327 Cmo07g00176 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00176 Cmo-Chr7:930218 Cmo03g00316 Cmo-Chr3:4336478 1.32E-178 dispersed
Cmo20g00338 Cmo-Chr20:1665343 Cmo07g00176 Cmo-Chr7:930218 1.91E-160 dispersed
Cmo13g00625 Cmo-Chr13:6757756 Cmo07g00176 Cmo-Chr7:930218 0 wgd
Cmo18g00399 Cmo-Chr18:2594858 Cmo07g00176 Cmo-Chr7:930218 0 wgd
Cmo03g01327 Cmo-Chr3:9900418 Cmo07g00176 Cmo-Chr7:930218 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74447 PF00069 Pkinase 4.60E-76 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00176 - - csv:101214053 841.647