Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00202 ATGGGTTCTGGAGACTGGTTTAAGACAGTAATTCGCTTAAGGAAAGTAAAAACCAGCAGTTCAAAACATGCTAAGGAGAAATCAAATGCTTTGAAATCGAATAATCTGGAAAAAGATTCCTCGAAGGTTAAAAAGAGTGGTACCAATGGGAGCAACAAGTCTATTGGGATGCCAATTGAAGACGTTGCTGCAGTTCGGATTCAGACTGCATATCGAGCTTATCGTGCCAGGAAAATTTTACGTCGCTTGAAAGGAGCTGTGAGACTGCAGAATCTGACTCAAGGCCACTCTGTTAGAAGGCATGCTACATCTACAATAAGTTATCTTCATTCATGGAGCAATATACAGGCTCAAATTAGGGCTCGTCGAATCTGTATGGTGACTGAAGGACGCCTCAAACAAAAGAGATTGGAGAATCAACGAAAACTTGAGACTAAACTTCATGATATTGAGGTAGAGTGGTGTGGCGGTGCAGACACCATGGAGGAGATTCTTTCAAGGGTACACGAGAGAGAAGAAGCAGCTGTTAAGCGTGAACGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAGTGAGATGTATGGACTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATTGCTGCTCGTCCATGGGAGAGCCGCGTACCATCTAAGTTCGTTACTCCAAAGAAATCGACAATGAGACAATCAAGCAAAGCCAGTAAGAAAAGCTCTCCATCCCCAAAAGCAAGAGTTTTGGTTAAACCTCCTTCCCCGAATGGAAAATCAACTCCAAAGGCTCGAAGGTTGTCGTATCCAGCAACCGAGAAAACCGATAAACTGGCTACAGAAGAAAAGGGCATCAAGAAAAGCGTTAAAGATGATGAAGCAAACACTAAGAAAGAAGAAACAACGTCCTAA 939 43.34 MGSGDWFKTVIRLRKVKTSSSKHAKEKSNALKSNNLEKDSSKVKKSGTNGSNKSIGMPIEDVAAVRIQTAYRAYRARKILRRLKGAVRLQNLTQGHSVRRHATSTISYLHSWSNIQAQIRARRICMVTEGRLKQKRLENQRKLETKLHDIEVEWCGGADTMEEILSRVHEREEAAVKRERAMAYAFSHQWRANSSEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSKFVTPKKSTMRQSSKASKKSSPSPKARVLVKPPSPNGKSTPKARRLSYPATEKTDKLATEEKGIKKSVKDDEANTKKEETTS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1025018 1028283 - CmoCh07G002020.1 Cmo07g00202 385510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00202 312 PANTHER IQ-DOMAIN 9 1 285 - -
Cmo07g00202 312 MobiDBLite consensus disorder prediction 231 312 - -
Cmo07g00202 312 MobiDBLite consensus disorder prediction 22 44 - -
Cmo07g00202 312 MobiDBLite consensus disorder prediction 278 312 - -
Cmo07g00202 312 MobiDBLite consensus disorder prediction 232 251 - -
Cmo07g00202 312 PANTHER IQ-DOMAIN 5-RELATED 1 285 - -
Cmo07g00202 312 Gene3D - 60 106 - -
Cmo07g00202 312 ProSiteProfiles IQ motif profile. 82 111 IPR000048 GO:0005515
Cmo07g00202 312 MobiDBLite consensus disorder prediction 17 55 - -
Cmo07g00202 312 ProSiteProfiles IQ motif profile. 60 88 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00202 - - - cmax:111497513 588.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00202 Cmo-Chr7:1025018 Cmo16g00447 Cmo-Chr16:2143563 8.68E-72 dispersed
Cmo07g00202 Cmo-Chr7:1025018 Cmo10g00895 Cmo-Chr10:4380090 1.25E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g183 . . Bda02g00019 . . Bpe01g00879 . . . . . Cma07g00203 . Car07g00168 . . . Bhi03g00330 . . . . . . Cla01g02298 Cam01g2409 Cec04g2056 . Clacu01g2430 Cmu01g2294 Cre04g1962 Cone1ag0191 Cone5ag1677 . . Lsi01g00265 Csa06g03677 . Cme08g00247 . . . . . . . Bma11g01010 . . Cmo07g00202 . . . . Cpe19g01052 . . . . . . . . . . . . . . . . . Chy02g00253 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g01429 CCT,ECH 99 267 IQD Protein Family AT3G09710 54.7 1.4e-46 184.9
Cmo18g00887 . 102 270 IQD Protein Family AT3G09710 51.4 3.3e-40 163.7
Cmo06g00353 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.1e-62 236.1
Cmo04g02721 CCT,CST,ECH 1 478 IQD Protein Family AT3G52290 54.1 4.1e-98 355.9
Cmo15g00445 CCT,CST,ECH 1 452 IQD Protein Family AT3G52290 50.4 1.7e-88 323.9
Cmo11g00931 CST 1 412 IQD Protein Family AT3G22190 57.2 4.2e-95 345.9
Cmo10g00895 CST 23 388 IQD Protein Family AT3G22190 57.9 8.4e-88 321.6
Cmo01g01783 . 1 434 IQD Protein Family AT2G26180 59.7 6.1e-115 411.8
Cmo09g00343 . 238 629 IQD Protein Family AT2G26180 58.9 2.3e-98 356.7
Cmo07g00202 . 1 279 IQD Protein Family AT2G33990 51.6 6.3e-65 245.0
Cmo16g00447 . 109 292 IQD Protein Family AT2G33990 53.5 8.2e-49 191.4
Cmo07g00202 . 1 253 IQD Protein Family AT3G15050 51.4 7.8e-60 228.0
Cmo16g00447 . 65 285 IQD Protein Family AT3G15050 52.4 1.1e-53 207.6
Cmo15g00857 . 123 458 IQD Protein Family AT5G13460 52.4 1.3e-75 281.2
Cmo06g00970 . 1 500 IQD Protein Family AT4G00820 56.1 1.2e-126 451.1
Cmo06g00970 . 1 500 IQD Protein Family AT1G01110 52.3 1.6e-123 440.7
Cmo08g00706 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.3 3.2e-73 273.1
Cmo11g00664 CST 1 382 IQD Protein Family AT3G16490 51.6 8.9e-68 255.0
Cmo10g00702 CST 1 376 IQD Protein Family AT3G16490 51.5 7.8e-64 241.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007113 1 8 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00202 Cmo_Chr07 FPKM 7.509186 8.329475 10.44816 12.853553 9.685436 8.836937 11.273422 8.073051 8.340815 8.019697