Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00209 ATGGCTTCCTCAAACAGACACTGGCCTAGCATGTTCAAGTCCAAGCCCTGCAATTCTCACCACCAATGGCAGCATGACATCAACCCAAATCTCTCTTCTTCCACTGCCACTTGCCTCAGATCTGCTCCTTATGCTACAGTTGGTGGGTGTGAAGAGAGGAGTCCAGAGCCAAAACCAAGATGGAATCCAAAACCAGAACAAATTCGGATTCTTGAAGCAATTTTCAATTCCGGGATGGTGAATCCTCCAAGAGATGAAATTAGAAAAATTAGAGCTCAATTGCAGGAGTATGGACAAGTGGGTGATGCTAATGTTTTTTATTGGTTTCAAAACAGAAAATCAAGAAGCAAAAGCAAACTCCGCCATATCCAAAACTCCAAATCTAATAATAATCACAATTCCCAAACCACCACTGCTCCTTTACCATCTCCTATTCCTCCCATCGCCACTGCCACCATCACCACCGCCGCCGCCGCCGCCACAACTTGTTCTTCCTCTTCTTCTTCCGACAAATCTTCTCCAATATCAGCACCCATCAAAACTTTTAGCTCCAATTCAATGACCCAGAACTACCTTCCACAACTCACCAACGAGCTCATGCCTGAACCCTTTTTCTTCCCGGTGTCACAGACCGGCGGCGGTGGCAGCGGTGGAAGCTCTAATTTGAGTCAAGGGTTTTGCTTGTCGGAGCTTTGTAGTGTAGTGCAGCAAGTGCCTGAAGATGGGGTTGTTGGGCCTTGCACAAGCCTGTTGCTGAGTGAGATTATGAACCCAACTGAGGCTTCAAAAAAAGATTTGGATGAGGACAAGATCACGGTGAAGTTGCCGCCTCCATTCATGAATTATCATCCTGTTTTCACTCCCTCCACTGATAACATTCTTCCACCAACCACTATTTCCACCGCCCTCACCACTCTCCCACCTCCTTCCCATACAATTCATCAAGGTGTAGGTGAAGTTTATGGATTAGGTCAAAGCTGTGTAGGGAAGTCAACAGTGTTCATCAATGGTGTGGCGTTCGAGGTGGGTTCTGGTGCGTTCAATGTCCGGGAGGCTTTTGGTGATGAAGCTGTTCTGCTTCACTCCTCTGGTCAGCCTGTTCTCACTAATGAATGGGGCCTCACTCTCCACTCACTCCAACATGGCGCCTCTTATTATCTTATATAA 1167 46.96 MASSNRHWPSMFKSKPCNSHHQWQHDINPNLSSSTATCLRSAPYATVGGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKSKLRHIQNSKSNNNHNSQTTTAPLPSPIPPIATATITTAAAAATTCSSSSSSDKSSPISAPIKTFSSNSMTQNYLPQLTNELMPEPFFFPVSQTGGGGSGGSSNLSQGFCLSELCSVVQQVPEDGVVGPCTSLLLSEIMNPTEASKKDLDEDKITVKLPPPFMNYHPVFTPSTDNILPPTTISTALTTLPPPSHTIHQGVGEVYGLGQSCVGKSTVFINGVAFEVGSGAFNVREAFGDEAVLLHSSGQPVLTNEWGLTLHSLQHGASYYLI 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1051693 1053627 + CmoCh07G002090.1 Cmo07g00209 385517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00209 388 CDD homeodomain 57 119 IPR001356 GO:0003677
Cmo07g00209 388 SMART HOX_1 56 123 IPR001356 GO:0003677
Cmo07g00209 388 SUPERFAMILY Homeodomain-like 54 121 IPR009057 -
Cmo07g00209 388 MobiDBLite consensus disorder prediction 118 148 - -
Cmo07g00209 388 Pfam Homeodomain 58 117 IPR001356 GO:0003677
Cmo07g00209 388 MobiDBLite consensus disorder prediction 123 139 - -
Cmo07g00209 388 ProSiteProfiles 'Homeobox' domain profile. 54 119 IPR001356 GO:0003677
Cmo07g00209 388 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 388 - -
Cmo07g00209 388 Gene3D - 58 124 - -
Cmo07g00209 388 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 388 IPR044557 GO:0003700|GO:0050793
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01301 Cmo07g00209 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00062 Cmo-Chr6:391721 Cmo07g00209 Cmo-Chr7:1051693 5.46E-17 dispersed
Cmo07g00209 Cmo-Chr7:1051693 Cmo14g00462 Cmo-Chr14:2226971 1.31E-15 dispersed
Cmo03g01301 Cmo-Chr3:9804730 Cmo07g00209 Cmo-Chr7:1051693 1.04E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10073 PF00046 Homeodomain 1.80E-14 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00209 - - bhj:120074379 569.311