Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00209 ATGGCTTCCTCAAACAGACACTGGCCTAGCATGTTCAAGTCCAAGCCCTGCAATTCTCACCACCAATGGCAGCATGACATCAACCCAAATCTCTCTTCTTCCACTGCCACTTGCCTCAGATCTGCTCCTTATGCTACAGTTGGTGGGTGTGAAGAGAGGAGTCCAGAGCCAAAACCAAGATGGAATCCAAAACCAGAACAAATTCGGATTCTTGAAGCAATTTTCAATTCCGGGATGGTGAATCCTCCAAGAGATGAAATTAGAAAAATTAGAGCTCAATTGCAGGAGTATGGACAAGTGGGTGATGCTAATGTTTTTTATTGGTTTCAAAACAGAAAATCAAGAAGCAAAAGCAAACTCCGCCATATCCAAAACTCCAAATCTAATAATAATCACAATTCCCAAACCACCACTGCTCCTTTACCATCTCCTATTCCTCCCATCGCCACTGCCACCATCACCACCGCCGCCGCCGCCGCCACAACTTGTTCTTCCTCTTCTTCTTCCGACAAATCTTCTCCAATATCAGCACCCATCAAAACTTTTAGCTCCAATTCAATGACCCAGAACTACCTTCCACAACTCACCAACGAGCTCATGCCTGAACCCTTTTTCTTCCCGGTGTCACAGACCGGCGGCGGTGGCAGCGGTGGAAGCTCTAATTTGAGTCAAGGGTTTTGCTTGTCGGAGCTTTGTAGTGTAGTGCAGCAAGTGCCTGAAGATGGGGTTGTTGGGCCTTGCACAAGCCTGTTGCTGAGTGAGATTATGAACCCAACTGAGGCTTCAAAAAAAGATTTGGATGAGGACAAGATCACGGTGAAGTTGCCGCCTCCATTCATGAATTATCATCCTGTTTTCACTCCCTCCACTGATAACATTCTTCCACCAACCACTATTTCCACCGCCCTCACCACTCTCCCACCTCCTTCCCATACAATTCATCAAGGTGTAGGTGAAGTTTATGGATTAGGTCAAAGCTGTGTAGGGAAGTCAACAGTGTTCATCAATGGTGTGGCGTTCGAGGTGGGTTCTGGTGCGTTCAATGTCCGGGAGGCTTTTGGTGATGAAGCTGTTCTGCTTCACTCCTCTGGTCAGCCTGTTCTCACTAATGAATGGGGCCTCACTCTCCACTCACTCCAACATGGCGCCTCTTATTATCTTATATAA 1167 46.96 MASSNRHWPSMFKSKPCNSHHQWQHDINPNLSSSTATCLRSAPYATVGGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKSKLRHIQNSKSNNNHNSQTTTAPLPSPIPPIATATITTAAAAATTCSSSSSSDKSSPISAPIKTFSSNSMTQNYLPQLTNELMPEPFFFPVSQTGGGGSGGSSNLSQGFCLSELCSVVQQVPEDGVVGPCTSLLLSEIMNPTEASKKDLDEDKITVKLPPPFMNYHPVFTPSTDNILPPTTISTALTTLPPPSHTIHQGVGEVYGLGQSCVGKSTVFINGVAFEVGSGAFNVREAFGDEAVLLHSSGQPVLTNEWGLTLHSLQHGASYYLI 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1051693 1053627 + CmoCh07G002090.1 Cmo07g00209 385517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00209 388 CDD homeodomain 57 119 IPR001356 GO:0003677
Cmo07g00209 388 SMART HOX_1 56 123 IPR001356 GO:0003677
Cmo07g00209 388 SUPERFAMILY Homeodomain-like 54 121 IPR009057 -
Cmo07g00209 388 MobiDBLite consensus disorder prediction 118 148 - -
Cmo07g00209 388 Pfam Homeodomain 58 117 IPR001356 GO:0003677
Cmo07g00209 388 MobiDBLite consensus disorder prediction 123 139 - -
Cmo07g00209 388 ProSiteProfiles 'Homeobox' domain profile. 54 119 IPR001356 GO:0003677
Cmo07g00209 388 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 388 - -
Cmo07g00209 388 Gene3D - 58 124 - -
Cmo07g00209 388 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 388 IPR044557 GO:0003700|GO:0050793
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00209 - - - bhj:120074379 569.311
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g01301 Cmo07g00209 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00062 Cmo-Chr6:391721 Cmo07g00209 Cmo-Chr7:1051693 5.46E-17 dispersed
Cmo07g00209 Cmo-Chr7:1051693 Cmo14g00462 Cmo-Chr14:2226971 1.31E-15 dispersed
Cmo03g01301 Cmo-Chr3:9804730 Cmo07g00209 Cmo-Chr7:1051693 1.04E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g165 . . Bda02g00504 . . Bpe01g00455 . . . . Cma03g01305 Cma07g00209 Car03g01165 Car07g00176 . . Cpe10g00163 Bhi03g00342 . . . . . . Cla01g02289 Cam01g2401 Cec04g2047 Cco04g2125 Clacu01g2422 Cmu01g2286 Cre04g1954 . . Cone6ag0982 Cone9ag0982 Lsi01g00272 Csa06g03668 . Cme08g00256 . Blo14g00416 . . . . . . . Cmo03g01301 Cmo07g00209 . . . . Cpe19g01046 . . . . . . . . . . . . . . . . . Chy02g00262 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo13g01029 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 56.5 3.0e-46 183.3
Cmo11g00316 CCT,ECH 1 140 Wox Gene Family AT3G18010 62.1 1.7e-38 157.5
Cmo06g00062 . 4 226 Wox Gene Family AT3G03660 54.3 3.1e-52 203.0
Cmo14g00462 . 14 243 Wox Gene Family AT3G03660 50.4 2.6e-43 173.3
Cmo16g01322 . 1 275 Wox Gene Family AT4G35550 51.0 7.8e-71 264.6
Cmo06g00143 . 31 268 Wox Gene Family AT4G35550 53.7 9.8e-66 247.7
Cmo01g02079 CST 1 162 Wox Gene Family AT4G35550 67.5 1.3e-54 210.7
Cmo06g00143 . 31 170 Wox Gene Family AT1G20700 55.9 5.9e-39 158.3
Cmo01g02079 CST 38 169 Wox Gene Family AT1G20700 58.5 1.0e-38 157.5
Cmo05g00169 CST 5 173 Wox Gene Family AT1G46480 59.9 1.9e-47 186.4
Cmo12g00505 CST 5 138 Wox Gene Family AT1G46480 62.8 1.7e-43 173.3
Cmo07g00209 CST 1 388 Wox Gene Family AT2G33880 50.5 9.2e-65 245.0
Cmo13g01029 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 56.5 3.0e-46 183.3
Cmo11g00316 CCT,ECH 1 140 Wox Gene Family AT3G18010 62.1 1.7e-38 157.5
Cmo05g00169 CST 5 173 Wox Gene Family AT1G46480 59.9 1.9e-47 186.4
Cmo12g00505 CST 5 138 Wox Gene Family AT1G46480 62.8 1.7e-43 173.3
Cmo07g00209 CST 1 388 Wox Gene Family AT2G33880 50.5 9.2e-65 245.0
Cmo06g00062 . 4 226 Wox Gene Family AT3G03660 54.3 3.1e-52 203.0
Cmo14g00462 . 14 243 Wox Gene Family AT3G03660 50.4 2.6e-43 173.3
Cmo16g01322 . 1 275 Wox Gene Family AT4G35550 51.0 7.8e-71 264.6
Cmo06g00143 . 31 268 Wox Gene Family AT4G35550 53.7 9.8e-66 247.7
Cmo01g02079 CST 1 162 Wox Gene Family AT4G35550 67.5 1.3e-54 210.7
Cmo06g00143 . 31 170 Wox Gene Family AT1G20700 55.9 5.9e-39 158.3
Cmo01g02079 CST 38 169 Wox Gene Family AT1G20700 58.5 1.0e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008426 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10073 PF00046 Homeodomain 1.80E-14 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00209 Cmo_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0