Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00215 ATGGCTGCTCTTATCGATCTCAATACCACCGAAGAAGACGATGCTCCCTCCTCTGCTGCTTCCTCTGCTTCCTCTTCCTCTGCTTCTGCTTTAACCTCCTCCCCTTCGCCTTCTCTCACCTCCTCAATTTGCTTGGAGCTGTGGCATGCCTGTGCTGGACCTCTTACGTCCTTGCCCAAGAAAGGGAGTTTGGTTGTGTATTTTCCACAGGGCCACTTGGAGCAGATGCAAGAGTTCCCTGCCACGGCGGCCTATGATCTCCCTCCCCACATCCTCTGTCGCGTCATTGATGTTCAGCTTCACGCTGAGGCTGGGAGTGACGAGGTTTATGCTCAAGTCTCATTGTTTCCTGAAAACGAGCCCATTGAACACAAGATGCAGGAAGAGATGACCAATGACAGTGAGGGGGAGGATTTTGAAGGAAGTGAGAAGACCACAACACCCCACATGTTCTGCAAGACACTTACTGCTTCAGACACTAGCACTCATGGAGGCTTCTCCGTCCCCAGACGTGCAGCTGAGGATTGCTTCCCGCCATTGGATTATAGTCAACAGAGGCCTTCACAAGAGCTAGTTGCAAAGGATCTCCTTGGGATAAAATGGAAGTTTAGGCACATATATCGCGGTATGAAATGCAAATCTCAGATATTTGGTGCCTTACTCACATTGGCTGTTTGTTTCCCCTATTACGTGCTACTGAGTTCCCTTTCTGGGCAGCCTAGAAGGCATTTGCTAACCACTGGATGGAGTGCATTCGTGAACAAGAAAAGGCTTGTTTCTGGTGATGCAGTGCTGTTTCTTAGGGGCAATGATGGGGAATTACGACTCGGGATTCGACGAGCTGCGCAGCTTAAAACCGGTTCTGCCTTTTCTAACATTTGCAGTCAGCAACTCAACTCCAGTAGTATCATGGATGTGGTTAATGCTATATCTTCAAAAACTTCCTTTAGCGTATACTATAATCCCAGAGCTACCTCTTCACAGTTTGTCTTGCCTTTCCACAAGTTCTTGAAAAGCATTAACCATTCCTTCTCTGCTGGAATGAGGTTCAGCTTGAGTTTCGAAACCGACGATGCTGCAGATCGAAGGGTATTGGAATCTTCAATAACATTTCTTTCATACTCGTATCGCAGATGCACTGGACGTATAACTGGAGTTGGAGATGTGGATCCTATCAGATGGCCTGGGTCAAGGTGGAGGTCCCTTGTGGTGAGGTGGGACAATGTCGAGACTAAAAGACATGGCAGGGTTTCCCCGTGGGAGATCGAGCCCTCTGGTTCTGTTTCTGTGGCTAGCAACATGGTTCCACCGGGTTTAAAAAGGACCAGGATTGGGCTCTCTCCCACAGAACTAGAGTTTCCAGCTCCGAATGGAATTGGAGCATCAGACTTTGGGGAATCATTAAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAGTACTCCCATTGATGGCGACAACAACATTCGTCATCCACCGGAGAAGAGGAGATCATTTCCTGGTTTACACGGTTCCGGGATAGCTATAATGAGAAATGGTCCAAGAATCCCAGTTACCAACTCTGAAACTTCCTCCCGGGGTTTCATGTTTGATGAATCCTTCCAATTCCATAAGGTCTTGCAAGGTCAAGAAATATATCCTAGTCCATTTTTTGGAATAGCCACTGCCACCAATGAAGTCAAGGCAAGTGGTGGTTATGGTCCTGTGGACAGTGTTCCACTGTCCAGATCTAAAGATGGATGGCCGATTACAATGCAGAGTGAAAATTTCCTCACACGCTCTTCCATTCCTTCTGTACAAGTCTCATCACCATCATCTGTGTTCATGTTTCAGCAGTCAATGGTTCCTGTTCAAAGCTTTAATTCATATAACCGTGGCAACTTCACAGAACAGAGGACTATGAACAAGAGTACCTCCCATAATTCTGGGACAGCTTTTATGACAACTTCATTGGGCGTGCAGAAGCAGCTCGCCCTATCACATCCTTCTACAACAGAACCAGCGTTTACTGGCAATAAAGCTGGATGTAGATTGTTTGGTTTTTCATTAACAGAAGGAAAGAATGTTGGGAATACAGACAACGCTTCTCCAGCAACAACTCCAATTAATGCAGGAACTGCCTCTGTGTTGTCCTCCAATAGTGGACTACGTTGTCCTTTGAAGTCTCCACTGATGAGCAAGGTGGTTGGAAGCAACTGTACCGAAGGGGCTGTCCAGTATCATTTTGCAAATTGCAGTACCTACTACTGA 2259 46.7 MAALIDLNTTEEDDAPSSAASSASSSSASALTSSPSPSLTSSICLELWHACAGPLTSLPKKGSLVVYFPQGHLEQMQEFPATAAYDLPPHILCRVIDVQLHAEAGSDEVYAQVSLFPENEPIEHKMQEEMTNDSEGEDFEGSEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLLGIKWKFRHIYRGMKCKSQIFGALLTLAVCFPYYVLLSSLSGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKTGSAFSNICSQQLNSSSIMDVVNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRVLESSITFLSYSYRRCTGRITGVGDVDPIRWPGSRWRSLVVRWDNVETKRHGRVSPWEIEPSGSVSVASNMVPPGLKRTRIGLSPTELEFPAPNGIGASDFGESLRFQKVLQGQEILGYSTPIDGDNNIRHPPEKRRSFPGLHGSGIAIMRNGPRIPVTNSETSSRGFMFDESFQFHKVLQGQEIYPSPFFGIATATNEVKASGGYGPVDSVPLSRSKDGWPITMQSENFLTRSSIPSVQVSSPSSVFMFQQSMVPVQSFNSYNRGNFTEQRTMNKSTSHNSGTAFMTTSLGVQKQLALSHPSTTEPAFTGNKAGCRLFGFSLTEGKNVGNTDNASPATTPINAGTASVLSSNSGLRCPLKSPLMSKVVGSNCTEGAVQYHFANCSTYY 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1076631 1081396 + CmoCh07G002150.1 Cmo07g00215 385523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00215 752 ProSiteProfiles B3 DNA-binding domain profile. 151 282 IPR003340 GO:0003677
Cmo07g00215 752 Pfam B3 DNA binding domain 237 281 IPR003340 GO:0003677
Cmo07g00215 752 MobiDBLite consensus disorder prediction 1 36 - -
Cmo07g00215 752 Gene3D - 149 282 IPR015300 -
Cmo07g00215 752 SMART B3_2 151 282 IPR003340 GO:0003677
Cmo07g00215 752 Gene3D - 343 432 - -
Cmo07g00215 752 MobiDBLite consensus disorder prediction 11 36 - -
Cmo07g00215 752 PANTHER AUXIN RESPONSE FACTOR 3 34 743 - -
Cmo07g00215 752 SUPERFAMILY DNA-binding pseudobarrel domain 145 289 IPR015300 -
Cmo07g00215 752 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 743 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo07g00215 752 CDD B3_DNA 149 280 IPR003340 GO:0003677
Cmo07g00215 752 Pfam Auxin response factor 307 402 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01295 Cmo07g00215 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00215 Cmo-Chr7:1076631 Cmo20g00509 Cmo-Chr20:2433984 3.02E-141 dispersed
Cmo03g01295 Cmo-Chr3:9773108 Cmo07g00215 Cmo-Chr7:1076631 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10075 PF06507 Auxin_resp 5.00E-25 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00215 K14486 - csv:101220018 1125.15