Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00220 | ATGGAAGCTGCTGCTTCCGACGGCGGAAATCACAACCTGAATAATGATAATATTAACAAAATTAGTAACTCAATGGAGACATATCCATCAGAGTCGACAAGGGCTGAGCTGTCGGAGAAATTGGGGCTCACCGATCGGCAATTGCAGATGTGGTTTTGTCACAGGAGGTTGAAAGACAAGAAGGAACCGGCGAAGAAACCACGAAATGTGGTACCGGCGTTGCCTGATTCTCCCATTGACGAATTGAGAGTGGTAGCCGAGCCGGGTAGTGATTACGCTTCAGGGTCGGGCTCGGGTTCAAGTCCATTCGGTGATGTTGGGCTGCGTAATGTGGCGTCTGGAAGTGGTGGAGAAGATATGCCGATGACGAGAAGGTATTACGAACCTTCAAGGTCCATTATGGAACTTAGAGCCATTGCTTGTGTGGAGTCGCAGTTAGGCGAGCCATTGAGGGAGGACGGACCTATTATTGGGATTGAATTTGATTCATTACCACCTGATGCTTTCGGAGCACCTCTAGTGGCTGAACAGCAGAAGCGATCTGGACATTTGTATGGGGACAAATATGATCAACGGGATGCAAAATCAAATAAAGCAACTGCAAGGGCATTCCCGGAATATTCATTTATGCCAGACCAGTCTAGAATTAGAGCTGATGCTTATGGACCAGTTGCCCAATCACATTATCCAGATTCATTAGTCGAGGTTTCAGCAGCCAGGACTCCATCATTTTTGCTTGGTCGTGAACAGTTGAATAGGAGCCATAATTATCATGGTCAGGTCTCAAGGGTTCGTCTTCTGTCTCAACAGGAGCAGCAAGGAGTTGCAGTTCCATCTCCTGCCGATGATAACACATTTGTTCCTGCAAGTATCAGGAATCCAATTGTTGCACAAGAAGATTCGTATATGTTACCTGATGGGCAAGTTTTCCCAAATGATGTCATCATTAGGATGGAAAGAAAACGCAAGAGTGAAGAAGCTCGTCTGAACAAAGAAGCTGAAGCCCATGAGATAAGAATGCGAAAAGAGCTTGAGAAACAAGACAATTTGAGGAAAAAGAGTGAAGAGCGAATGAGGAAAGAAATGGAAAAGCAAGATCGTGAAAGAAGGAAAGAAGAGGAGAGGTTACAGCGAGAAAAACAGCGAGAAGTAGAAAGGTTGAAGCGTGAGGAAAGACGTGAACTTGAACGGAGGGAAAAGTTTCTGCAGAGGGAGTATTTGAAGGCTGAGAAGAGGAGGCAAAAAGAAGCTATTCGCAAGGAAAAGGAAGCAGTGAGACGCAAAGCTGCTATTGAGAAGGCTACTGCACGTAGAATTGCTCGTGAGTCTATGGAACTTATTGAGGATGAACAGCTTGAACTGATGGAAATTGCAGCTGCAAACAAAGGATTATCCTCCATATTAAGTCTTGATCATGACACTTTGCAGAATCTCGAATCTTTCCGAGGCTACCTATTAGTTCATCAAAATGACAAATCAGGTGCATTTCCACCCAAGTCTGTGCAATTGAAAAAACCTTTCAGCATTCAGCCTTGGATCAATTCAGAGGAGAACATTGGTAACCTTCTCATGGTCTGGAGATTTTTTATTACATTTTCTGATGTTCTAGAGCTATGGCCCTTTACTCTTGATGAGTTTGTTCAAGCTCTTCATGACTATGATTCAAGATTACTGGGTGAGATTCACATTTGTCTTCTGAGACTGATTGTAAAAGATATTGAAGATGTTGCAAGAACACCTTCTGCAGGATTGGGAATGAATCAGATTGGTGTTGCCAACACTGGAGGTGGACATCCACAAATTGTTGAAGGGGCATATGCGTGGGGGTTTGACATTTGCAACTGGCAGAAACATTTAAACCCATTAACATGGCCTGAAATATTTCGACAACTAGCATTATCAGCTGGATTCGGACCTCAGTTAAAGAGGAGTTTGGCATGGTCTGAAATGCGTAGCAATGATGAGGCTAAATGTGGTGAGGATGTAGTTTCTACTCTTCGCAATGGTTCAGCAGCTGAAAATGCATTTTCTATAATGCAAGAGAAGGGTTTGTTAGCTCCTCGAAGATCTAGGCATCGGCTCACTCCTGGAACTGTCAAATTTGCTGCTTTCCATGTCCTTTCACTAGAAGGCAGTGAGGGGTTAACAGTACTAGAACTTGCAGAGAAGATACAGAGATCTGGACTTAGAGATCTATCTACAAGCAGAACACCAGAGGCTTCTATTTCTGTTGCTTTGACGAGGGATACTAAGCTTTTTGAAAGAATAGCTCCTTCTACATATCGTGTACGAGCTCCCTATAGGAAGGATCCAGATGATGCCGAGGACTTGCTTTCAGTAGCCAGAAAGAAGATTCAGGTATTCCAGAATGGGTTTTTGGCTGGAGAAGATGCTGATGATGTTGAAAGAGACGAAGAATCTGAATGTGATGATGTTGATGAAGATCCTGAAGTTGATGATGGAGCGACGACATCTTTGATGAATGAAGATGTTAGCAAAGGAGATGCTAACCTGAGAGTTGAGAATGAAAACTCATGTCATGATATTGATGGAAATCCACAAAATGAGATTGCCAAAAATATACCATCGTCTCCCCTAAGTGGCTCCAAGGACACAAAATATTTAAATATACCTACAGAGCAACATGCTGCTGTTGATGGGACTACTGTTACTGATCTTGATCAAGAAAATATGGAGATTGATGAGAGCAAGGAAGGTGAATCATGGATTCAAGGACTTACAGAAGGTGAATATCATGATCTTAGTGTTGAGGAGCGGTTGAATGCCCTTATTGCCTTAACCAGCATCGCAAATGAAGGAAACTCAATTCGCCTTGTTCTTGAGGATCGCTTGGAAGCCGCGAATGCTGTTAAGAAGCAAATGTTGGCTGAGGCTCAGATTGATAAATCTCGCCTGAAAGAAGAAATCATTACTAAATCAGATTTTCCAATTCACATTGTGAGCAAGGTGGAAACTGAACTCAATGGTTCCGCTATGGAGGATGGCCAAAGCCCTTTTCCTGTTGCTGACAATCAGAACAATGAAACAACCCTTTGCACTGCAGAAAACCTTGGTAGTGTGCCTAATGAGAGGGCTACTTTAGTGCCAGATTTTTTCCCAGTCCCAGATAACTTTTTGGCTCAACAATGTGGACATGCTTCAAAGAGGTCACGTTCACAGTTAAAATCTTATATTGCCCACAGAGCAGAAGAAATGTACACTTACAGGTCCTTGCCTCTAGGTCGAGATCGTAGGCGTAATCGATACTGGCAATTTGTTGCATCTTCTTCAAGCAATGATCCTGGTTCTGGGAGAATCTTTGTAGAAATGTATGATGGAAAATGGATGCTTATTGATTCTGAAGAGGGCTTTGATGCTCTTTCAATGGCTTTGGACACACGTGGGGTTAGAGAATCACACCTACGCATAATGTTGCAAATGATAGAGACATCATTCAAGGAAAATGTTAGGAGGAATCTTCAGTGTGTCAATGTGATGGTTCAAAGTCGAATTACTCCTAAAAATGAAAACGATGAATCAAGCTCTAGTCCTGATTGCAATGCCAGTTTTAACAGTCCTAGCAGCACTGTTTGCGGTTTAAATTTGGATACAACGATAACATCATCTTCATTTAGAATTGAGCTCGGGAGAAATGAAAATGAAAAGAAGGCTGCATTTAAAAGGTATCAAGACTTGCAGAGGTGGATGTTAAGAGAGTGCTTTAGCACATCAACATTATGTGCCATGGAGTTTGGAGAAAAAAGGTGCACGCCGCTGTTGGACATTTGCGATTCTTGTCTGTGCTTGTTTGATTCTCAACATTCTCACTGCTCTTCGTGCCATCAAACTTATGGCACTAGTGAGAACGATACTAATTTTCTGGAACACGAATGTCACTGTACGAGGGAAAGGAAGTCTTACCATTGGGATACACATGCATTAGATGCATCTCTTCCCCTCAAAAGTAGATTGCTCAAGGCCCTCTTAGCTTTCATTGAGGTACATGTTCCTTCAGAAGCTTTTCAATTATTTTGGACAGAACATAGGAAAGATTGGGGTGTCAGGATGAAATTATCTTCAACTATTGAGGAGCTACTACAGATTTTGACCCTGTTTGAAAGTGTAATTAAGCGAGACTTCCTAAAATCAGACTTCACTACAACAGACGAACACCTGAGCTCATGTTCCATCTCTAGGAATGTTATACATGACGCAGCAGATATTGGGTCTGTTCTGACATTACCATGGATTCCACGGACTAGCGCAGCTGTTGCTTTAAGGCTTTGTGAGATAGATGTATCAATTTATTATATCGGGTGTGAGAAACCAGAGCCTGACCAGTATAAGGAAATCGGAGAACATGTAATTAAGAATGAAAACGAACTGGACTATGATGGTCTAATGAAGCAAGAAAACTTGGCTGATCCAAAAAGTTTAAGGAACAGCTACAAACGTGGTGGTCGAAGGAGTCGAGATCATGGACGTCGTAAAAGGTGGCAGAAAAAAGTTAATGGTTCCAAACCTAGCCGTGTTCGGCCAAATGTGAAGAGTAATGAGAAGATGAATGAAGAACAGCGGGAACTGGGGCAAGGAATGCAGGTTTTGGGGGTACGAGGTCCCCGTACTGTAAGGAAGCGAAGGGCTGAGAATAGCATTCCAGATGAAGGATTGTTGGGGCTGGTGCCTAGTAGTAGTACTCAGAATATAGATGAATCTCCAAAAGACTATATTGGGGAATGGGAGGATGAAAAAATGGATAGGTTCGTGGATATGGAAGATGATGAGAATGTGATGGAAGATGGAGAGAACGAAGAGGATGAAGAGAATGTAAACAACGTAGAACCAATGGACTCGGACGAGGATGCTCAGGAAGTTGGATATGAGCAAGGGAGTTGGGAGTATGGTATTGACAATGGCACCTCCAACAGATGGAATGGTGATTTAGGGGTGGCTAGTGATGAGGAGGATGTGGAGTTATCTGAGGACTACAATGGCACTGAAGAGGGGGGAAATGATTTTGGGGAGGAAGAGTTAGATGATGATACGAGCGTGGAGTCGGATTGTTCACCAAATAGGATAGGCAATAACGGTGGAAGAGAATCCCCTGTTTCCGACGATTATAGTGATTAA | 5130 | 42.85 | MEAAASDGGNHNLNNDNINKISNSMETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKKEPAKKPRNVVPALPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNVASGSGGEDMPMTRRYYEPSRSIMELRAIACVESQLGEPLREDGPIIGIEFDSLPPDAFGAPLVAEQQKRSGHLYGDKYDQRDAKSNKATARAFPEYSFMPDQSRIRADAYGPVAQSHYPDSLVEVSAARTPSFLLGREQLNRSHNYHGQVSRVRLLSQQEQQGVAVPSPADDNTFVPASIRNPIVAQEDSYMLPDGQVFPNDVIIRMERKRKSEEARLNKEAEAHEIRMRKELEKQDNLRKKSEERMRKEMEKQDRERRKEEERLQREKQREVERLKREERRELERREKFLQREYLKAEKRRQKEAIRKEKEAVRRKAAIEKATARRIARESMELIEDEQLELMEIAAANKGLSSILSLDHDTLQNLESFRGYLLVHQNDKSGAFPPKSVQLKKPFSIQPWINSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLGEIHICLLRLIVKDIEDVARTPSAGLGMNQIGVANTGGGHPQIVEGAYAWGFDICNWQKHLNPLTWPEIFRQLALSAGFGPQLKRSLAWSEMRSNDEAKCGEDVVSTLRNGSAAENAFSIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSRTPEASISVALTRDTKLFERIAPSTYRVRAPYRKDPDDAEDLLSVARKKIQVFQNGFLAGEDADDVERDEESECDDVDEDPEVDDGATTSLMNEDVSKGDANLRVENENSCHDIDGNPQNEIAKNIPSSPLSGSKDTKYLNIPTEQHAAVDGTTVTDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALIALTSIANEGNSIRLVLEDRLEAANAVKKQMLAEAQIDKSRLKEEIITKSDFPIHIVSKVETELNGSAMEDGQSPFPVADNQNNETTLCTAENLGSVPNERATLVPDFFPVPDNFLAQQCGHASKRSRSQLKSYIAHRAEEMYTYRSLPLGRDRRRNRYWQFVASSSSNDPGSGRIFVEMYDGKWMLIDSEEGFDALSMALDTRGVRESHLRIMLQMIETSFKENVRRNLQCVNVMVQSRITPKNENDESSSSPDCNASFNSPSSTVCGLNLDTTITSSSFRIELGRNENEKKAAFKRYQDLQRWMLRECFSTSTLCAMEFGEKRCTPLLDICDSCLCLFDSQHSHCSSCHQTYGTSENDTNFLEHECHCTRERKSYHWDTHALDASLPLKSRLLKALLAFIEVHVPSEAFQLFWTEHRKDWGVRMKLSSTIEELLQILTLFESVIKRDFLKSDFTTTDEHLSSCSISRNVIHDAADIGSVLTLPWIPRTSAAVALRLCEIDVSIYYIGCEKPEPDQYKEIGEHVIKNENELDYDGLMKQENLADPKSLRNSYKRGGRRSRDHGRRKRWQKKVNGSKPSRVRPNVKSNEKMNEEQRELGQGMQVLGVRGPRTVRKRRAENSIPDEGLLGLVPSSSTQNIDESPKDYIGEWEDEKMDRFVDMEDDENVMEDGENEEDEENVNNVEPMDSDEDAQEVGYEQGSWEYGIDNGTSNRWNGDLGVASDEEDVELSEDYNGTEEGGNDFGEEELDDDTSVESDCSPNRIGNNGGRESPVSDDYSD | 1709 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1101074 | 1112576 | + | CmoCh07G002200.1 | Cmo07g00220 | 385528 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00220 | 1709 | MobiDBLite | consensus disorder prediction | 1473 | 1529 | - | - | |
Cmo07g00220 | 1709 | MobiDBLite | consensus disorder prediction | 1173 | 1193 | - | - | |
Cmo07g00220 | 1709 | Gene3D | - | 22 | 62 | - | - | |
Cmo07g00220 | 1709 | Pfam | DDT domain | 517 | 572 | IPR018501 | - | |
Cmo07g00220 | 1709 | Coils | Coil | 955 | 975 | - | - | |
Cmo07g00220 | 1709 | MobiDBLite | consensus disorder prediction | 8 | 32 | - | - | |
Cmo07g00220 | 1709 | CDD | homeodomain | 28 | 62 | IPR001356 | GO:0003677 | |
Cmo07g00220 | 1709 | ProSiteProfiles | 'Homeobox' domain profile. | 28 | 62 | IPR001356 | GO:0003677 | |
Cmo07g00220 | 1709 | MobiDBLite | consensus disorder prediction | 1651 | 1684 | - | - | |
Cmo07g00220 | 1709 | SUPERFAMILY | Homeodomain-like | 25 | 72 | IPR009057 | - | |
Cmo07g00220 | 1709 | SMART | testlast3 | 516 | 575 | IPR018501 | - | |
Cmo07g00220 | 1709 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cmo07g00220 | 1709 | PANTHER | HOMEOBOX-DDT DOMAIN PROTEIN RLT2 | 24 | 1709 | IPR044977 | GO:0006357 | |
Cmo07g00220 | 1709 | MobiDBLite | consensus disorder prediction | 322 | 386 | - | - | |
Cmo07g00220 | 1709 | MobiDBLite | consensus disorder prediction | 1483 | 1505 | - | - | |
Cmo07g00220 | 1709 | MobiDBLite | consensus disorder prediction | 1554 | 1573 | - | - | |
Cmo07g00220 | 1709 | MobiDBLite | consensus disorder prediction | 847 | 867 | - | - | |
Cmo07g00220 | 1709 | MobiDBLite | consensus disorder prediction | 1687 | 1709 | - | - | |
Cmo07g00220 | 1709 | MobiDBLite | consensus disorder prediction | 1594 | 1626 | - | - | |
Cmo07g00220 | 1709 | MobiDBLite | consensus disorder prediction | 798 | 820 | - | - | |
Cmo07g00220 | 1709 | MobiDBLite | consensus disorder prediction | 795 | 828 | - | - | |
Cmo07g00220 | 1709 | Pfam | WSTF, HB1, Itc1p, MBD9 motif 1 | 905 | 945 | IPR028942 | - | |
Cmo07g00220 | 1709 | Pfam | Williams-Beuren syndrome DDT (WSD), D-TOX E motif | 1076 | 1146 | IPR028941 | - | |
Cmo07g00220 | 1709 | SMART | HOX_1 | 19 | 66 | IPR001356 | GO:0003677 | |
Cmo07g00220 | 1709 | Pfam | Homeodomain | 26 | 61 | IPR001356 | GO:0003677 | |
Cmo07g00220 | 1709 | Pfam | HB1, ASXL, restriction endonuclease HTH domain | 697 | 765 | IPR007759 | GO:0006355 | |
Cmo07g00220 | 1709 | MobiDBLite | consensus disorder prediction | 846 | 867 | - | - | |
Cmo07g00220 | 1709 | MobiDBLite | consensus disorder prediction | 1594 | 1709 | - | - | |
Cmo07g00220 | 1709 | Coils | Coil | 315 | 428 | - | - | |
Cmo07g00220 | 1709 | ProSiteProfiles | HARE-type HTH domain profile. | 697 | 766 | IPR007759 | GO:0006355 | |
Cmo07g00220 | 1709 | PANTHER | HOMEOBOX-DDT DOMAIN PROTEIN RLT1 | 24 | 1709 | - | - | |
Cmo07g00220 | 1709 | MobiDBLite | consensus disorder prediction | 88 | 123 | - | - | |
Cmo07g00220 | 1709 | ProSiteProfiles | DDT domain profile. | 516 | 575 | IPR018501 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g01285 | Cmo07g00220 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00220 | Cmo-Chr7:1101074 | Cmo19g00909 | Cmo-Chr19:8523938 | 0 | dispersed | |
Cmo07g01326 | Cmo-Chr7:7489521 | Cmo07g00220 | Cmo-Chr7:1101074 | 9.84E-10 | transposed | |
Cmo20g01037 | Cmo-Chr20:9308338 | Cmo07g00220 | Cmo-Chr7:1101074 | 7.47E-08 | transposed | |
Cmo03g01285 | Cmo-Chr3:9728462 | Cmo07g00220 | Cmo-Chr7:1101074 | 4.29E-157 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10077 | PF15613 | WSD | 2.90E-13 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00220 | - | - | cmo:103484497 | 2682.52 |