Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00220 ATGGAAGCTGCTGCTTCCGACGGCGGAAATCACAACCTGAATAATGATAATATTAACAAAATTAGTAACTCAATGGAGACATATCCATCAGAGTCGACAAGGGCTGAGCTGTCGGAGAAATTGGGGCTCACCGATCGGCAATTGCAGATGTGGTTTTGTCACAGGAGGTTGAAAGACAAGAAGGAACCGGCGAAGAAACCACGAAATGTGGTACCGGCGTTGCCTGATTCTCCCATTGACGAATTGAGAGTGGTAGCCGAGCCGGGTAGTGATTACGCTTCAGGGTCGGGCTCGGGTTCAAGTCCATTCGGTGATGTTGGGCTGCGTAATGTGGCGTCTGGAAGTGGTGGAGAAGATATGCCGATGACGAGAAGGTATTACGAACCTTCAAGGTCCATTATGGAACTTAGAGCCATTGCTTGTGTGGAGTCGCAGTTAGGCGAGCCATTGAGGGAGGACGGACCTATTATTGGGATTGAATTTGATTCATTACCACCTGATGCTTTCGGAGCACCTCTAGTGGCTGAACAGCAGAAGCGATCTGGACATTTGTATGGGGACAAATATGATCAACGGGATGCAAAATCAAATAAAGCAACTGCAAGGGCATTCCCGGAATATTCATTTATGCCAGACCAGTCTAGAATTAGAGCTGATGCTTATGGACCAGTTGCCCAATCACATTATCCAGATTCATTAGTCGAGGTTTCAGCAGCCAGGACTCCATCATTTTTGCTTGGTCGTGAACAGTTGAATAGGAGCCATAATTATCATGGTCAGGTCTCAAGGGTTCGTCTTCTGTCTCAACAGGAGCAGCAAGGAGTTGCAGTTCCATCTCCTGCCGATGATAACACATTTGTTCCTGCAAGTATCAGGAATCCAATTGTTGCACAAGAAGATTCGTATATGTTACCTGATGGGCAAGTTTTCCCAAATGATGTCATCATTAGGATGGAAAGAAAACGCAAGAGTGAAGAAGCTCGTCTGAACAAAGAAGCTGAAGCCCATGAGATAAGAATGCGAAAAGAGCTTGAGAAACAAGACAATTTGAGGAAAAAGAGTGAAGAGCGAATGAGGAAAGAAATGGAAAAGCAAGATCGTGAAAGAAGGAAAGAAGAGGAGAGGTTACAGCGAGAAAAACAGCGAGAAGTAGAAAGGTTGAAGCGTGAGGAAAGACGTGAACTTGAACGGAGGGAAAAGTTTCTGCAGAGGGAGTATTTGAAGGCTGAGAAGAGGAGGCAAAAAGAAGCTATTCGCAAGGAAAAGGAAGCAGTGAGACGCAAAGCTGCTATTGAGAAGGCTACTGCACGTAGAATTGCTCGTGAGTCTATGGAACTTATTGAGGATGAACAGCTTGAACTGATGGAAATTGCAGCTGCAAACAAAGGATTATCCTCCATATTAAGTCTTGATCATGACACTTTGCAGAATCTCGAATCTTTCCGAGGCTACCTATTAGTTCATCAAAATGACAAATCAGGTGCATTTCCACCCAAGTCTGTGCAATTGAAAAAACCTTTCAGCATTCAGCCTTGGATCAATTCAGAGGAGAACATTGGTAACCTTCTCATGGTCTGGAGATTTTTTATTACATTTTCTGATGTTCTAGAGCTATGGCCCTTTACTCTTGATGAGTTTGTTCAAGCTCTTCATGACTATGATTCAAGATTACTGGGTGAGATTCACATTTGTCTTCTGAGACTGATTGTAAAAGATATTGAAGATGTTGCAAGAACACCTTCTGCAGGATTGGGAATGAATCAGATTGGTGTTGCCAACACTGGAGGTGGACATCCACAAATTGTTGAAGGGGCATATGCGTGGGGGTTTGACATTTGCAACTGGCAGAAACATTTAAACCCATTAACATGGCCTGAAATATTTCGACAACTAGCATTATCAGCTGGATTCGGACCTCAGTTAAAGAGGAGTTTGGCATGGTCTGAAATGCGTAGCAATGATGAGGCTAAATGTGGTGAGGATGTAGTTTCTACTCTTCGCAATGGTTCAGCAGCTGAAAATGCATTTTCTATAATGCAAGAGAAGGGTTTGTTAGCTCCTCGAAGATCTAGGCATCGGCTCACTCCTGGAACTGTCAAATTTGCTGCTTTCCATGTCCTTTCACTAGAAGGCAGTGAGGGGTTAACAGTACTAGAACTTGCAGAGAAGATACAGAGATCTGGACTTAGAGATCTATCTACAAGCAGAACACCAGAGGCTTCTATTTCTGTTGCTTTGACGAGGGATACTAAGCTTTTTGAAAGAATAGCTCCTTCTACATATCGTGTACGAGCTCCCTATAGGAAGGATCCAGATGATGCCGAGGACTTGCTTTCAGTAGCCAGAAAGAAGATTCAGGTATTCCAGAATGGGTTTTTGGCTGGAGAAGATGCTGATGATGTTGAAAGAGACGAAGAATCTGAATGTGATGATGTTGATGAAGATCCTGAAGTTGATGATGGAGCGACGACATCTTTGATGAATGAAGATGTTAGCAAAGGAGATGCTAACCTGAGAGTTGAGAATGAAAACTCATGTCATGATATTGATGGAAATCCACAAAATGAGATTGCCAAAAATATACCATCGTCTCCCCTAAGTGGCTCCAAGGACACAAAATATTTAAATATACCTACAGAGCAACATGCTGCTGTTGATGGGACTACTGTTACTGATCTTGATCAAGAAAATATGGAGATTGATGAGAGCAAGGAAGGTGAATCATGGATTCAAGGACTTACAGAAGGTGAATATCATGATCTTAGTGTTGAGGAGCGGTTGAATGCCCTTATTGCCTTAACCAGCATCGCAAATGAAGGAAACTCAATTCGCCTTGTTCTTGAGGATCGCTTGGAAGCCGCGAATGCTGTTAAGAAGCAAATGTTGGCTGAGGCTCAGATTGATAAATCTCGCCTGAAAGAAGAAATCATTACTAAATCAGATTTTCCAATTCACATTGTGAGCAAGGTGGAAACTGAACTCAATGGTTCCGCTATGGAGGATGGCCAAAGCCCTTTTCCTGTTGCTGACAATCAGAACAATGAAACAACCCTTTGCACTGCAGAAAACCTTGGTAGTGTGCCTAATGAGAGGGCTACTTTAGTGCCAGATTTTTTCCCAGTCCCAGATAACTTTTTGGCTCAACAATGTGGACATGCTTCAAAGAGGTCACGTTCACAGTTAAAATCTTATATTGCCCACAGAGCAGAAGAAATGTACACTTACAGGTCCTTGCCTCTAGGTCGAGATCGTAGGCGTAATCGATACTGGCAATTTGTTGCATCTTCTTCAAGCAATGATCCTGGTTCTGGGAGAATCTTTGTAGAAATGTATGATGGAAAATGGATGCTTATTGATTCTGAAGAGGGCTTTGATGCTCTTTCAATGGCTTTGGACACACGTGGGGTTAGAGAATCACACCTACGCATAATGTTGCAAATGATAGAGACATCATTCAAGGAAAATGTTAGGAGGAATCTTCAGTGTGTCAATGTGATGGTTCAAAGTCGAATTACTCCTAAAAATGAAAACGATGAATCAAGCTCTAGTCCTGATTGCAATGCCAGTTTTAACAGTCCTAGCAGCACTGTTTGCGGTTTAAATTTGGATACAACGATAACATCATCTTCATTTAGAATTGAGCTCGGGAGAAATGAAAATGAAAAGAAGGCTGCATTTAAAAGGTATCAAGACTTGCAGAGGTGGATGTTAAGAGAGTGCTTTAGCACATCAACATTATGTGCCATGGAGTTTGGAGAAAAAAGGTGCACGCCGCTGTTGGACATTTGCGATTCTTGTCTGTGCTTGTTTGATTCTCAACATTCTCACTGCTCTTCGTGCCATCAAACTTATGGCACTAGTGAGAACGATACTAATTTTCTGGAACACGAATGTCACTGTACGAGGGAAAGGAAGTCTTACCATTGGGATACACATGCATTAGATGCATCTCTTCCCCTCAAAAGTAGATTGCTCAAGGCCCTCTTAGCTTTCATTGAGGTACATGTTCCTTCAGAAGCTTTTCAATTATTTTGGACAGAACATAGGAAAGATTGGGGTGTCAGGATGAAATTATCTTCAACTATTGAGGAGCTACTACAGATTTTGACCCTGTTTGAAAGTGTAATTAAGCGAGACTTCCTAAAATCAGACTTCACTACAACAGACGAACACCTGAGCTCATGTTCCATCTCTAGGAATGTTATACATGACGCAGCAGATATTGGGTCTGTTCTGACATTACCATGGATTCCACGGACTAGCGCAGCTGTTGCTTTAAGGCTTTGTGAGATAGATGTATCAATTTATTATATCGGGTGTGAGAAACCAGAGCCTGACCAGTATAAGGAAATCGGAGAACATGTAATTAAGAATGAAAACGAACTGGACTATGATGGTCTAATGAAGCAAGAAAACTTGGCTGATCCAAAAAGTTTAAGGAACAGCTACAAACGTGGTGGTCGAAGGAGTCGAGATCATGGACGTCGTAAAAGGTGGCAGAAAAAAGTTAATGGTTCCAAACCTAGCCGTGTTCGGCCAAATGTGAAGAGTAATGAGAAGATGAATGAAGAACAGCGGGAACTGGGGCAAGGAATGCAGGTTTTGGGGGTACGAGGTCCCCGTACTGTAAGGAAGCGAAGGGCTGAGAATAGCATTCCAGATGAAGGATTGTTGGGGCTGGTGCCTAGTAGTAGTACTCAGAATATAGATGAATCTCCAAAAGACTATATTGGGGAATGGGAGGATGAAAAAATGGATAGGTTCGTGGATATGGAAGATGATGAGAATGTGATGGAAGATGGAGAGAACGAAGAGGATGAAGAGAATGTAAACAACGTAGAACCAATGGACTCGGACGAGGATGCTCAGGAAGTTGGATATGAGCAAGGGAGTTGGGAGTATGGTATTGACAATGGCACCTCCAACAGATGGAATGGTGATTTAGGGGTGGCTAGTGATGAGGAGGATGTGGAGTTATCTGAGGACTACAATGGCACTGAAGAGGGGGGAAATGATTTTGGGGAGGAAGAGTTAGATGATGATACGAGCGTGGAGTCGGATTGTTCACCAAATAGGATAGGCAATAACGGTGGAAGAGAATCCCCTGTTTCCGACGATTATAGTGATTAA 5130 42.85 MEAAASDGGNHNLNNDNINKISNSMETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKKEPAKKPRNVVPALPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNVASGSGGEDMPMTRRYYEPSRSIMELRAIACVESQLGEPLREDGPIIGIEFDSLPPDAFGAPLVAEQQKRSGHLYGDKYDQRDAKSNKATARAFPEYSFMPDQSRIRADAYGPVAQSHYPDSLVEVSAARTPSFLLGREQLNRSHNYHGQVSRVRLLSQQEQQGVAVPSPADDNTFVPASIRNPIVAQEDSYMLPDGQVFPNDVIIRMERKRKSEEARLNKEAEAHEIRMRKELEKQDNLRKKSEERMRKEMEKQDRERRKEEERLQREKQREVERLKREERRELERREKFLQREYLKAEKRRQKEAIRKEKEAVRRKAAIEKATARRIARESMELIEDEQLELMEIAAANKGLSSILSLDHDTLQNLESFRGYLLVHQNDKSGAFPPKSVQLKKPFSIQPWINSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLGEIHICLLRLIVKDIEDVARTPSAGLGMNQIGVANTGGGHPQIVEGAYAWGFDICNWQKHLNPLTWPEIFRQLALSAGFGPQLKRSLAWSEMRSNDEAKCGEDVVSTLRNGSAAENAFSIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSRTPEASISVALTRDTKLFERIAPSTYRVRAPYRKDPDDAEDLLSVARKKIQVFQNGFLAGEDADDVERDEESECDDVDEDPEVDDGATTSLMNEDVSKGDANLRVENENSCHDIDGNPQNEIAKNIPSSPLSGSKDTKYLNIPTEQHAAVDGTTVTDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALIALTSIANEGNSIRLVLEDRLEAANAVKKQMLAEAQIDKSRLKEEIITKSDFPIHIVSKVETELNGSAMEDGQSPFPVADNQNNETTLCTAENLGSVPNERATLVPDFFPVPDNFLAQQCGHASKRSRSQLKSYIAHRAEEMYTYRSLPLGRDRRRNRYWQFVASSSSNDPGSGRIFVEMYDGKWMLIDSEEGFDALSMALDTRGVRESHLRIMLQMIETSFKENVRRNLQCVNVMVQSRITPKNENDESSSSPDCNASFNSPSSTVCGLNLDTTITSSSFRIELGRNENEKKAAFKRYQDLQRWMLRECFSTSTLCAMEFGEKRCTPLLDICDSCLCLFDSQHSHCSSCHQTYGTSENDTNFLEHECHCTRERKSYHWDTHALDASLPLKSRLLKALLAFIEVHVPSEAFQLFWTEHRKDWGVRMKLSSTIEELLQILTLFESVIKRDFLKSDFTTTDEHLSSCSISRNVIHDAADIGSVLTLPWIPRTSAAVALRLCEIDVSIYYIGCEKPEPDQYKEIGEHVIKNENELDYDGLMKQENLADPKSLRNSYKRGGRRSRDHGRRKRWQKKVNGSKPSRVRPNVKSNEKMNEEQRELGQGMQVLGVRGPRTVRKRRAENSIPDEGLLGLVPSSSTQNIDESPKDYIGEWEDEKMDRFVDMEDDENVMEDGENEEDEENVNNVEPMDSDEDAQEVGYEQGSWEYGIDNGTSNRWNGDLGVASDEEDVELSEDYNGTEEGGNDFGEEELDDDTSVESDCSPNRIGNNGGRESPVSDDYSD 1709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1101074 1112576 + CmoCh07G002200.1 Cmo07g00220 385528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00220 1709 MobiDBLite consensus disorder prediction 1473 1529 - -
Cmo07g00220 1709 MobiDBLite consensus disorder prediction 1173 1193 - -
Cmo07g00220 1709 Gene3D - 22 62 - -
Cmo07g00220 1709 Pfam DDT domain 517 572 IPR018501 -
Cmo07g00220 1709 Coils Coil 955 975 - -
Cmo07g00220 1709 MobiDBLite consensus disorder prediction 8 32 - -
Cmo07g00220 1709 CDD homeodomain 28 62 IPR001356 GO:0003677
Cmo07g00220 1709 ProSiteProfiles 'Homeobox' domain profile. 28 62 IPR001356 GO:0003677
Cmo07g00220 1709 MobiDBLite consensus disorder prediction 1651 1684 - -
Cmo07g00220 1709 SUPERFAMILY Homeodomain-like 25 72 IPR009057 -
Cmo07g00220 1709 SMART testlast3 516 575 IPR018501 -
Cmo07g00220 1709 MobiDBLite consensus disorder prediction 1 32 - -
Cmo07g00220 1709 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 24 1709 IPR044977 GO:0006357
Cmo07g00220 1709 MobiDBLite consensus disorder prediction 322 386 - -
Cmo07g00220 1709 MobiDBLite consensus disorder prediction 1483 1505 - -
Cmo07g00220 1709 MobiDBLite consensus disorder prediction 1554 1573 - -
Cmo07g00220 1709 MobiDBLite consensus disorder prediction 847 867 - -
Cmo07g00220 1709 MobiDBLite consensus disorder prediction 1687 1709 - -
Cmo07g00220 1709 MobiDBLite consensus disorder prediction 1594 1626 - -
Cmo07g00220 1709 MobiDBLite consensus disorder prediction 798 820 - -
Cmo07g00220 1709 MobiDBLite consensus disorder prediction 795 828 - -
Cmo07g00220 1709 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 905 945 IPR028942 -
Cmo07g00220 1709 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1076 1146 IPR028941 -
Cmo07g00220 1709 SMART HOX_1 19 66 IPR001356 GO:0003677
Cmo07g00220 1709 Pfam Homeodomain 26 61 IPR001356 GO:0003677
Cmo07g00220 1709 Pfam HB1, ASXL, restriction endonuclease HTH domain 697 765 IPR007759 GO:0006355
Cmo07g00220 1709 MobiDBLite consensus disorder prediction 846 867 - -
Cmo07g00220 1709 MobiDBLite consensus disorder prediction 1594 1709 - -
Cmo07g00220 1709 Coils Coil 315 428 - -
Cmo07g00220 1709 ProSiteProfiles HARE-type HTH domain profile. 697 766 IPR007759 GO:0006355
Cmo07g00220 1709 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT1 24 1709 - -
Cmo07g00220 1709 MobiDBLite consensus disorder prediction 88 123 - -
Cmo07g00220 1709 ProSiteProfiles DDT domain profile. 516 575 IPR018501 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01285 Cmo07g00220 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00220 Cmo-Chr7:1101074 Cmo19g00909 Cmo-Chr19:8523938 0 dispersed
Cmo07g01326 Cmo-Chr7:7489521 Cmo07g00220 Cmo-Chr7:1101074 9.84E-10 transposed
Cmo20g01037 Cmo-Chr20:9308338 Cmo07g00220 Cmo-Chr7:1101074 7.47E-08 transposed
Cmo03g01285 Cmo-Chr3:9728462 Cmo07g00220 Cmo-Chr7:1101074 4.29E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10077 PF15613 WSD 2.90E-13 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00220 - - cmo:103484497 2682.52