Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00232 ATGGACGACGACGACGACGACCACCGCCACCGCCGCCGCAACCACCGCCACAACCTCAACCTTCCTCCGTTCCCCCCCACCACTCCCCTCTCTCCTCCTCCTCCTCCTCCTAAAAATTCCCCCGTCCCAATTCTTCCCCACCCGCCCTTGGGATTCTCCCTCCGCACTCCACAATCCTATTTCGTCCCACCCTCCTTGCTCTCCTACGGCTTCCCCATTGGAAACGAGCCTATCAATCCCCTTTTGCCTAAAGACGATGGCCGAAGAGGCTTGGATGCTTGGACCACTAAAGTGGCTAGAAGTAAGAGAAGACTCGCCCGCCAAAGAAGCCTCAGCGTCACTAAACCCCCTTCTTCTTCCTCCTCCTCTTCTGGGCTCGCCGGTAGCAGCGACCACCATTCCAAACGAATAACAGTAACTCCTTCTCAACCCAACAGAACCCACAATCTCAATCTCTCCACCCTCAGCACCCCAAATAAGGTATTGAGAATATTGCTGAAGAAAGAGCTGAAGAACAGTGATGTCGGGTCTTTGGGCAGGATTGTCCTCCCCAAGAGGGAAGCTGAAGAGAATCTTCCATTTCTGAGTGATAAGGAAGGAATGCAAATTTTGATAAGAGATGTGAATTCGAACAAGAAATGGTCCATGAAATACAAGTACTGGGCAAACAACAGGAGTAGAATGTATGTTCTTGAAAGCACAGGGGATTTCGTTAAAGAAAATGGGCTGATGATGGGAGATTTAATTACCCTTTACGAGGATGATAGCAGGAACTTCTACGTGACGATTGATAAAGGGGAGAAGCATTTAAGCAGGGACGAAAATGAGGAGAAAAGGAAAGAGGCGGCGGCAGCAGCAGCAACAGCTTCAGCTTACCCAAACATGAACATTAAGGACGAAGAAGAGGATGACAATTTAGCTCTGTTGATCGAACAGCTCAAACACAGATCAGAAGACGACGAGCTCCCACAGTCACCTTGCGCCACTAGCCTCCTACTTTCACGTTCATACTTTGAGAGAGGGAGCTATACGGGAGCTGAAAAAGGGAATGACAACAATGATAATCATAATTATAATAATGATAATGATAATAATGATAATGATAATAATGGGAAGGAAGTGGAAGCCTTTGAAGATTGCTTTGGAGACCTTGAAATTCTGCCGGAAGTTAGTGGGTTCAAATTCCCTATTCTAGACTATTTGAGAAACGACAGAATATGA 1221 47.26 MDDDDDDHRHRRRNHRHNLNLPPFPPTTPLSPPPPPPKNSPVPILPHPPLGFSLRTPQSYFVPPSLLSYGFPIGNEPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPPSSSSSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPNKVLRILLKKELKNSDVGSLGRIVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTGDFVKENGLMMGDLITLYEDDSRNFYVTIDKGEKHLSRDENEEKRKEAAAAAATASAYPNMNIKDEEEDDNLALLIEQLKHRSEDDELPQSPCATSLLLSRSYFERGSYTGAEKGNDNNDNHNYNNDNDNNDNDNNGKEVEAFEDCFGDLEILPEVSGFKFPILDYLRNDRI 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1161493 1164616 + CmoCh07G002320.1 Cmo07g00232 385540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00232 406 MobiDBLite consensus disorder prediction 346 365 - -
Cmo07g00232 406 MobiDBLite consensus disorder prediction 1 47 - -
Cmo07g00232 406 ProSiteProfiles B3 DNA-binding domain profile. 166 267 IPR003340 GO:0003677
Cmo07g00232 406 MobiDBLite consensus disorder prediction 22 47 - -
Cmo07g00232 406 Gene3D - 156 277 IPR015300 -
Cmo07g00232 406 SMART B3_2 166 267 IPR003340 GO:0003677
Cmo07g00232 406 Pfam B3 DNA binding domain 168 263 IPR003340 GO:0003677
Cmo07g00232 406 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 80 395 IPR044800 GO:0003700
Cmo07g00232 406 MobiDBLite consensus disorder prediction 99 153 - -
Cmo07g00232 406 CDD B3_DNA 165 263 IPR003340 GO:0003677
Cmo07g00232 406 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR LEC2 ISOFORM X1 80 395 - -
Cmo07g00232 406 MobiDBLite consensus disorder prediction 343 373 - -
Cmo07g00232 406 MobiDBLite consensus disorder prediction 111 153 - -
Cmo07g00232 406 SUPERFAMILY DNA-binding pseudobarrel domain 166 263 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00232 Cmo-Chr7:1161493 Cmo08g00060 Cmo-Chr8:360890 8.12E-34 dispersed
Cmo03g01268 Cmo-Chr3:9675571 Cmo07g00232 Cmo-Chr7:1161493 5.09E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10083 PF02362 B3 2.10E-16 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00232 - - cpep:111804135 326.635