Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00236 ATGGAGAAGGAGGCTAATTCTTGGCTTAGGAGAACCAAATTCTCTCACACAGTTTATCATCGATGGGACTCGTTAAGATTGACCCCTGTTCCTTTCACCATCGAACCACCTCGCAATTCTGGCTTGAAATCGAGGCCTCAATCAACTTCATCACCCCAGAAACCAAATCCTGATATTTCGAAGATTCAACCAAGTTTCATATCCAACAAGAAGAGGTATCTGTCTCCTCTTCCCACCAGCAACCTCTCTGACGTTTTCAGGGAAGCAAAATCCGAGAGTAAGAGATTCTCAACTCCAACTCCTCGACTTAGAGAACAAACGAAGGAATTCAAGAACATGGACCCTCAAGTTTCTAAATCTGCCAATTTCAAGCCATCTTTGAATACCAGTCCACTGAAACACCTAGCTACGGCAAAACGAGGTGATAAGTCAAAGCCCCGGAAGGACTCATCCTGGACCAAATATTTCGAGTCCGGTGGTGGAAGAGTCACCGCAGTTGAAACGGTCGATGACTGGAGTGTTGATCTCTCCGAGTTGTTTCTCGGGTTAAGGTTTGCCCATGGAGCTCACAGTCGTCTTTATCATGGAAAATACAAGGACAAACCTGTTGCTGTTAAAATTATTCGACAGCCCGAGGACGACGAAAATGGAGTTCTTGCTTCGAGATTGGAGAAGCAATTCACCCGAGAAGTTTCCCTTTTATCTCGTCTCAATCATCCGAACGTTTTAAAGTTTGTAGCTGCCTGTAGGAAGCCACCAGTTCACTGTGTCATTACCGAATATTTGTCTCAAGGATCATTAAGAGCATACTTGCACAAACTGGAGCACCAATCTCTTCCTATGCGAAAACTAATTGCAATGGCTTTAGATGTGGCTCGTGGCATGGAATATATTCACTCACAAGGCGTGATTCATCGGGATCTTAAACCCGAAAATGTTCTTATTGACGAGGACTTCCACCTGAAAATTGCAGATTTTGGTATAGCTTGTCCTGATGCCTTTCTCGACCCATTGGCTGACGATCCTGGTACTTATCGATGGATGGCACCGGAGATGATTAAACATAAACCCTATGGTCGAAAGGTCGATGTGTACAGCTTCGGGCTTATGTTGTGGGAAATGGTGGCTGGTGCAATTCCTTACCAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAACAAGAATCTTAGGCCTGTTATCTCAAGTGATTGTCCGTTGGCTATGCGAGCACTGATCGAGCAATGTTGGTCTGTAAATCCAGGGAAGAGACCCGATTTCTGGCAGGTTGTGAAGGAAATTTACACGATTGGGCATGGGATCGACATCGCCACTAAGTTAATGGGCTCTACGCCACACGATCAGCTCCTGCTTCAGACCTCCGATTCGTTTTCCGGGTTGCTCCTCTTCGCAATCGGGTTTCTTCTGTTCATGGTTTCGTTCGTGAAGGACAGAGAATTTCAAGGGTTCTTCGCTAAGGGATGTACGGTGCTTCACGTCTCAATGGCGATGTGGAGGTTCTATTTCGAGCGAAGAGTGGAGGACCTTGCCTGGGATTGGCTGAGGCAAATTGTTGGTGACATTCTTCTTGCCCTATCTTGGGTTTTCTTTCTTGTTTATTCCTGGAGAGAAAAATATGATTAG 1647 45.6 MEKEANSWLRRTKFSHTVYHRWDSLRLTPVPFTIEPPRNSGLKSRPQSTSSPQKPNPDISKIQPSFISNKKRYLSPLPTSNLSDVFREAKSESKRFSTPTPRLREQTKEFKNMDPQVSKSANFKPSLNTSPLKHLATAKRGDKSKPRKDSSWTKYFESGGGRVTAVETVDDWSVDLSELFLGLRFAHGAHSRLYHGKYKDKPVAVKIIRQPEDDENGVLASRLEKQFTREVSLLSRLNHPNVLKFVAACRKPPVHCVITEYLSQGSLRAYLHKLEHQSLPMRKLIAMALDVARGMEYIHSQGVIHRDLKPENVLIDEDFHLKIADFGIACPDAFLDPLADDPGTYRWMAPEMIKHKPYGRKVDVYSFGLMLWEMVAGAIPYQDMTPIQAAFAVVNKNLRPVISSDCPLAMRALIEQCWSVNPGKRPDFWQVVKEIYTIGHGIDIATKLMGSTPHDQLLLQTSDSFSGLLLFAIGFLLFMVSFVKDREFQGFFAKGCTVLHVSMAMWRFYFERRVEDLAWDWLRQIVGDILLALSWVFFLVYSWREKYD 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1172838 1177105 + CmoCh07G002360.1 Cmo07g00236 385544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00236 548 Pfam Protein tyrosine and serine/threonine kinase 185 434 IPR001245 GO:0004672|GO:0006468
Cmo07g00236 548 CDD STKc_MAP3K-like 186 435 - -
Cmo07g00236 548 Gene3D Transferase(Phosphotransferase) domain 1 264 449 - -
Cmo07g00236 548 MobiDBLite consensus disorder prediction 40 63 - -
Cmo07g00236 548 SMART serkin_6 179 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00236 548 MobiDBLite consensus disorder prediction 136 152 - -
Cmo07g00236 548 MobiDBLite consensus disorder prediction 89 112 - -
Cmo07g00236 548 ProSiteProfiles Protein kinase domain profile. 179 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00236 548 MobiDBLite consensus disorder prediction 89 152 - -
Cmo07g00236 548 PRINTS Tyrosine kinase catalytic domain signature 362 384 IPR001245 GO:0004672|GO:0006468
Cmo07g00236 548 PRINTS Tyrosine kinase catalytic domain signature 297 315 IPR001245 GO:0004672|GO:0006468
Cmo07g00236 548 PRINTS Tyrosine kinase catalytic domain signature 259 272 IPR001245 GO:0004672|GO:0006468
Cmo07g00236 548 PRINTS Tyrosine kinase catalytic domain signature 343 353 IPR001245 GO:0004672|GO:0006468
Cmo07g00236 548 PRINTS Tyrosine kinase catalytic domain signature 406 428 IPR001245 GO:0004672|GO:0006468
Cmo07g00236 548 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 4 433 - -
Cmo07g00236 548 MobiDBLite consensus disorder prediction 113 133 - -
Cmo07g00236 548 SUPERFAMILY Protein kinase-like (PK-like) 162 434 IPR011009 -
Cmo07g00236 548 PANTHER TYROSINE KINASE FAMILY PROTEIN 4 433 - -
Cmo07g00236 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Cmo07g00236 548 Gene3D Phosphorylase Kinase; domain 1 167 263 - -
Cmo07g00236 548 MobiDBLite consensus disorder prediction 30 63 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00581 Cmo-Chr4:2902092 Cmo07g00236 Cmo-Chr7:1172838 5.59E-57 dispersed
Cmo07g00236 Cmo-Chr7:1172838 Cmo18g00125 Cmo-Chr18:888021 2.00E-113 dispersed
Cmo16g00428 Cmo-Chr16:2038008 Cmo07g00236 Cmo-Chr7:1172838 2.07E-58 dispersed
Cmo13g00659 Cmo-Chr13:6946045 Cmo07g00236 Cmo-Chr7:1172838 6.43E-173 wgd
Cmo18g00354 Cmo-Chr18:2315755 Cmo07g00236 Cmo-Chr7:1172838 3.32E-171 wgd
Cmo03g01262 Cmo-Chr3:9665644 Cmo07g00236 Cmo-Chr7:1172838 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74448 PF07714 PK_Tyr_Ser-Thr 3.40E-60 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00236 - - csv:101204268 749.584