Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00278 ATGGGTGGAAATTGCAGGACGTTTGTTGGGTTTCTTCTGTTCTTCGTCATTTCATTCTTCCTCTGTTCTTCTCCTTTGTTTTGTGACGCTGCGAGTTCAATCACAAGGGGGACAGGTTTAAGAGACAGTAATAACGAGACCCTCATATCCGAAAATGAGTCCTACGAGATGGGTTTCTTCAGCCCTATAAATTCTTCATCACGATACGTTGGTATATGGTATCACAAGATCCCGGAACAGTCTGTTATTTGGGTTGCAAATAGGGACCAGCCACTTCTGAATAGAGATGGGGTTTTGAAGATCGGAGACGATGGGAACTTGGTCATTCTAGACGGCAACAACGTCTCTGTTTGGACAAGCAATATCACAGCGAATGCGTCTGATCTGAGGAACTTAACTCTGGGTAAAAATGGAGAATTGATTCTCTCGACCCACGACGAGGCGTCGAAAGTCCATTGGAGCAGCTTCGAACACCCCACAGATACATTTCTTCCAAATATGGTGGTGAAAGTGAACTCTGATTTGGGTGAGAAACGGATTTTTAGGTCGTGGAAATCAGAGACAAATCCGGCCGTCGGAAATTACAGTTTGGGTGTGGATCCTCTTGGAGCCGTACAGATTGTCATTTGGAATGGGAAAGATCGATGGTGGAGAAGCGGACACTGGGATAAGCAGATTTTTTCAGGGGTTCCGACCATGCGCTCAACGTCGTTGTATGGCTTCAAGGTTAACGCTGAGCGTCGAGACGAAATAACCTTGACTTTTCATCCATTGAATAACTCCGATAAGATGAAATTTCAAATACAGTGGGATGGTAAAGAAGCAGAGCAACGATGGAATGAAGCGAATCGCGTATGGGACACCATTCGTTTACTGCCTTCTAACGACTGCGATTTGTATAATTTTTGTGGGGATTTTGGGATTTGTTCTGAAACAAGTAGACCCAAGTGTAGTTGCCCTCATGGGTTTATACCCAAAAACAACGAGCAATGGAAGAGTGGGATTTGGTCAGATGGGTGTCAGAGGAAGACCCCATTGCTTCAGCAGAGGATGAACAGTAGTTCGAATGGCACTGTTGAAGATGGTAAAGAAGATGGGTTTGTGGCTGTACAGTTCGTGAAATTGCCTGATTTCATAACTGCAGTGTTTGTGGACTCTTGTGGAGATGAATGTTTGAACAGTTCTTCGTGTGTTGCATATTCGGATGCTCATGGAATTGGGTGCCTTACTTGGGATGGTCCCTTAATTGATATTCAGAAATTTGATGGTGTTGGGAATACTCTGAACATTCGTCTCGCTCATTCTGATTTGATACCTGTAGATAACGAGAGCAAATTGTCGACCGCTGCGATAGTATTGATATGTTTAGGAGGAACAGTTGTTATAGCTATGTTAGCATTGCTGCTATGGAAATTCAGAGACAAAATGAAAGGTTCAGCAGCAGCTGCTTCGAGTAAAACACAGAACAACAATGAAATGTTTGACCTGAGCAAGAGCAAAGAATTTTCAGCAGAGCTTTCAGGGCCATACGAATTAGGCAGAGAAGGCGAACAATTGAGTGGACCAGATTTGCCAATGTTCAATTTCAACTGTATAGCAACGGCTACTGGTAACTTCTCCGAGGCAAACAAGCTTGGTCAGGGAGGTTTCGGCCCAGTCTACAAGGTAACCAAGCATTTCTACTGCAAAGCAAAGAAAATGAGCTCAGGAAAGCTTCCATGTGGCCTAGAAGTTGCTGTGAAGAGGCTCTCAGTCCGGTCTGGCCAAGGTCTAGAAGAGTTTAAGAATGAGATTATACTGATAGGAAAGTTGCAGCATCGCAACCTGGTCAGGCTGTTGGGCTACTGCATTCAAGGAGAGGACAAGATGCTGCTCTATGAATATATGCCAAACAAAAGCTTGGATTGGTTTCTTTTCGGATATTGGGTTCAATTCCTTGGTGGGAATGGTGCAGATCCAGTTAAGCAGGTACTACTGGATTGGGAAAAACGGCTGTCAATCATGGAGGGGATTGCACGAGGACTGCTATATCTTCATCGAGACTCGAGACTACTAATCATTCATAGAGATTTAAAAGCCAGCAATATTTTGCTAGACGAAGACATGAATCCAAAGATATCGGACTTTGGTATGGCTAGAATATTTGGTGGAAACCAAAACGAGGCAACAAATACAATTCGAGTTGTTGGCACTGGTTACATGGCTCCCGAGTATGCAATGGAAGGTTTATTTTCGGTGAAATCAGACGTCTATAGTTTTGGTGTATTATTATTAGAGTTGATATGTGGTCGGAGGAACACTAGCTTTCGGTCAACCGAGTACTTAACCCTTATCAGCTATGCATGGAATCTTTGGAATGGAGGAAGAGCGATCGAACTTCTCGACCCGTCCATTCGGGATTCATCCCGAGAGGAGGAAGTATTGAAATGCATACATGTAGCAATGTTGTGTGTACAAGACTCCCCAGCATATAGACCAACAATGCAGTCCTTGGTGCTAATGCTGGAGAGTGAGTCTGCATCTCTTCCACAACCAAGACAACCTACCTATACTTCCACAAGAGCCTCGATCGACATCGACTTGTTTACCGATGGCCATGACGTTGTATCATCGAACAACGTAACAGTGACAATGGTGGAGGGTAGATAG 2649 44.09 MGGNCRTFVGFLLFFVISFFLCSSPLFCDAASSITRGTGLRDSNNETLISENESYEMGFFSPINSSSRYVGIWYHKIPEQSVIWVANRDQPLLNRDGVLKIGDDGNLVILDGNNVSVWTSNITANASDLRNLTLGKNGELILSTHDEASKVHWSSFEHPTDTFLPNMVVKVNSDLGEKRIFRSWKSETNPAVGNYSLGVDPLGAVQIVIWNGKDRWWRSGHWDKQIFSGVPTMRSTSLYGFKVNAERRDEITLTFHPLNNSDKMKFQIQWDGKEAEQRWNEANRVWDTIRLLPSNDCDLYNFCGDFGICSETSRPKCSCPHGFIPKNNEQWKSGIWSDGCQRKTPLLQQRMNSSSNGTVEDGKEDGFVAVQFVKLPDFITAVFVDSCGDECLNSSSCVAYSDAHGIGCLTWDGPLIDIQKFDGVGNTLNIRLAHSDLIPVDNESKLSTAAIVLICLGGTVVIAMLALLLWKFRDKMKGSAAAASSKTQNNNEMFDLSKSKEFSAELSGPYELGREGEQLSGPDLPMFNFNCIATATGNFSEANKLGQGGFGPVYKVTKHFYCKAKKMSSGKLPCGLEVAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNKSLDWFLFGYWVQFLGGNGADPVKQVLLDWEKRLSIMEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTGYMAPEYAMEGLFSVKSDVYSFGVLLLELICGRRNTSFRSTEYLTLISYAWNLWNGGRAIELLDPSIRDSSREEEVLKCIHVAMLCVQDSPAYRPTMQSLVLMLESESASLPQPRQPTYTSTRASIDIDLFTDGHDVVSSNNVTVTMVEGR 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1365082 1368816 + CmoCh07G002780.1 Cmo07g00278 385586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00278 882 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 12 882 - -
Cmo07g00278 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 686 698 IPR008271 GO:0004672|GO:0006468
Cmo07g00278 882 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 12 882 - -
Cmo07g00278 882 Pfam Protein tyrosine and serine/threonine kinase 542 833 IPR001245 GO:0004672|GO:0006468
Cmo07g00278 882 CDD STKc_IRAK 545 836 - -
Cmo07g00278 882 CDD PAN_AP_plant 360 433 - -
Cmo07g00278 882 Gene3D - 28 156 IPR036426 -
Cmo07g00278 882 CDD EGF_CA 295 327 - -
Cmo07g00278 882 Pfam PAN-like domain 363 418 IPR003609 -
Cmo07g00278 882 SMART serkin_6 539 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00278 882 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544
Cmo07g00278 882 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Cmo07g00278 882 SMART blect_4 39 159 IPR001480 -
Cmo07g00278 882 Gene3D Transferase(Phosphotransferase) domain 1 629 852 - -
Cmo07g00278 882 PIRSF SRK 5 882 IPR024171 GO:0004674
Cmo07g00278 882 Gene3D Phosphorylase Kinase; domain 1 514 628 - -
Cmo07g00278 882 SUPERFAMILY Protein kinase-like (PK-like) 524 860 IPR011009 -
Cmo07g00278 882 Pfam Domain of unknown function (DUF3403) 837 882 IPR021820 GO:0004674
Cmo07g00278 882 ProSiteProfiles Protein kinase domain profile. 539 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00278 882 CDD B_lectin 43 159 IPR001480 -
Cmo07g00278 882 ProSiteProfiles Bulb-type lectin domain profile. 33 155 IPR001480 -
Cmo07g00278 882 Pfam D-mannose binding lectin 82 185 IPR001480 -
Cmo07g00278 882 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 190 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00278 Cmo-Chr7:1365082 Cmo13g00711 Cmo-Chr13:7190230 0 dispersed
Cmo18g00315 Cmo-Chr18:2022876 Cmo07g00278 Cmo-Chr7:1365082 4.42E-21 dispersed
Cmo13g00707 Cmo-Chr13:7177217 Cmo07g00278 Cmo-Chr7:1365082 0 wgd
Cmo18g00314 Cmo-Chr18:2010095 Cmo07g00278 Cmo-Chr7:1365082 3.60E-154 wgd
Cmo03g00525 Cmo-Chr3:5400189 Cmo07g00278 Cmo-Chr7:1365082 0 wgd
Cmo07g00278 Cmo-Chr7:1365082 Cmo09g00901 Cmo-Chr9:4698818 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74449 PF07714 PK_Tyr_Ser-Thr 1.10E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00278 - - csv:101207147 1420.22