Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00279 ATGGCGGCTTCATATCCCGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGCTCTTCAATCCAACGCTGGCTCGACGCCGGTCATCGGACTTGTCCAATCACCCAATTGCCCCTTCCTGAAAACCCTTCTCTAATCCCTAACCATGCCCTCAGGAGCTTAATTTCAAATTTTAACCCTGTTTCCCTTTCCAAGCCATTTCTTCCTCATCCGCCGCCCCAAACCCTAATCTCGATTCTTATCTCTCCGTCTGCCTCCCTCGATTCTAAGCTCGATTGCCTCAATCAACTCGCCAGGGTGTCAAAGCGCGATTCCGTTATGCGAAGAAAATTGACCGAGTCTGGTGCCGTCTCGGCTGTTCTTAAATGCGTTGGTTCTGACGATCCGACCCTCCAAGAGAAGGCCCTGTCGCTGTTACTGAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGGGCTATTGGTCTCACCGTCGCAGCTCTTCAAGCCAGGTCCCCTGATTGCAGAGCCGTAGCCGCCACGATGCTGACGAGCTTAGCCGTTGTGGAGGTCAACAAGGCTACAATTGGGGCATATCCCTACGCGATTCGCTCTCTTGTTGGTATCTTACGATACGGCAACAACAGAGAGCAGAAGGAAGCAGCAACAGCGCTTTACGCCATCTGTTCATACCCTGGGAACCGTGTACGGACTGTGGAATGTGGGGCTGTTCCAATTCTGCTTGAAATTGCCAATTCGGGGCTGGATAGAGCAGTGGAGGTTCTGGGGCTTTTGGCCAAGTGTAGAGAAGGTCGAGAAGAGATGCAACGGTTCCACGGAAGTATGGAGATTTTGGGACGTGTGTTGAGAAATGGAGCCCCAAGAGGAGTTCAATACGCTCTTCTAACGCTGATTTCGCTCTGCTGCCATAGCGAGCGAGCGTGCGTGGAAGCCAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGATAACGAAAAGATCAGAGCAAATGCTGCAAAATTGATTCATATACTGCGAGGAAACAACGCATGA 1098 50.36 MAASYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPENPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSASLDSKLDCLNQLARVSKRDSVMRRKLTESGAVSAVLKCVGSDDPTLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVAALQARSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSLVGILRYGNNREQKEAATALYAICSYPGNRVRTVECGAVPILLEIANSGLDRAVEVLGLLAKCREGREEMQRFHGSMEILGRVLRNGAPRGVQYALLTLISLCCHSERACVEARREGVLGICMTLIDDDNEKIRANAAKLIHILRGNNA 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1369950 1371047 + CmoCh07G002790.1 Cmo07g00279 385587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00279 365 Gene3D - 208 269 IPR011989 -
Cmo07g00279 365 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Cmo07g00279 365 Gene3D - 270 365 IPR011989 -
Cmo07g00279 365 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Cmo07g00279 365 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Cmo07g00279 365 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 361 - -
Cmo07g00279 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
Cmo07g00279 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515
Cmo07g00279 365 PANTHER U BOX DOMAIN-CONTAINING 1 361 - -
Cmo07g00279 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Cmo07g00279 365 CDD RING-Ubox_PUB 9 50 IPR045210 -
Cmo07g00279 365 SUPERFAMILY RING/U-box 4 72 - -
Cmo07g00279 365 SMART arm_5 200 241 IPR000225 GO:0005515
Cmo07g00279 365 SMART arm_5 118 158 IPR000225 GO:0005515
Cmo07g00279 365 SMART arm_5 159 199 IPR000225 GO:0005515
Cmo07g00279 365 Gene3D - 87 207 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00279 Cmo-Chr7:1369950 Cmo13g00131 Cmo-Chr13:747202 1.83E-59 dispersed
Cmo03g00526 Cmo-Chr3:5404181 Cmo07g00279 Cmo-Chr7:1369950 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00279 - - csv:101213883 634.795