Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00281 ATGGCAGAGGATTTTCAGGCTGCTATTTGCGGCGATAATTGGTGGAGCTCTTCACGAAACATGATGGTCACCGTCGGTGGCTTATCGCCCTGTTCTGTCGGGATCGGCGACCTAGGTTGGCCGCCGGCGGATGATTTCCTCGACATCAAGCCCAAGTCCGCAACTGATTCCGACCACAACAACAACAACAACAACTCCATGCTTTTTCAAGACTATTCCACCTTCCAAATGATGGGTTTTGCTCTCTCTTCTTCCACCACCTCCGATCATTTGAACCAACCTGATGGTTTACTTTGCGGCGGTGGGCGAGGTGAGAGCAACTTCAATTCGAATGGAATTGAGAGGTACAAAGATGAGGAAATTAAAACGAGTTTCACGTCTGATTCGAGCTTCATAAACGGATTGAAGCAAGGAGATGATGAAGATTACAACATGTTGGAGCAAAATGGTTTGATGTCTGTTAACTGTTCATCCACAACTAACACACCCACTTGCCAGGGTTTGTTTCCACTTGACTCAACTTTATATGGATACCCTCATCAACAACAACAACAACAAGAACCACCACATGCCCATTCCCTTTTCAACGCAACCCACCCTCATCCTCACCCTCAGCCTGTTTCTGCCGCCTTGCACTTCGCCAATAACACTCCCTTTTGGAACGCCCCAACCGCAGCTTCTTCAACTCACATTCCACAGGGCATTGCTTCCTTACTTGAACAAAAGAGCGCCAAGCCTATCAATAATGGTAATTGTGAAAATGGTCAAGAACCCAAGAAATGTGACAAAAACAGCGCAAATGAATCAGCACCAGTGTTCAAAAGGCCTCGAATTGAAACTCCATCACCATTGCCGACATTTAAGGTGCGGAAAGAGAAGCTAGGGGACCGTGTGACTGCGCTTCAACAACTGGTTTCACCGTTTGGAAAGACCGATACTGCCTCAGTTCTTCACGAAGCCATTGAGTACATCAAGTTCCTCCACGATCAAGTCAGTGTCTTAAGCACTCCATATATGAAGAGCAACAATGGAATAACACCCACCCAACAACACCAACAGGTATGTGAAAAGGAAGACCCAGATTGCCCAAAACAAGATCTGAGAAGCCGAGGGCTTTGCTTGGTGCCGGTTTCAAGCACATTTCCGGTGTCCAATGTAGGCACGGCGGATTTCTGGACTCCGACGTTCGGCGGAACATTCCGGTGA 1206 47.51 MAEDFQAAICGDNWWSSSRNMMVTVGGLSPCSVGIGDLGWPPADDFLDIKPKSATDSDHNNNNNNSMLFQDYSTFQMMGFALSSSTTSDHLNQPDGLLCGGGRGESNFNSNGIERYKDEEIKTSFTSDSSFINGLKQGDDEDYNMLEQNGLMSVNCSSTTNTPTCQGLFPLDSTLYGYPHQQQQQQEPPHAHSLFNATHPHPHPQPVSAALHFANNTPFWNAPTAASSTHIPQGIASLLEQKSAKPINNGNCENGQEPKKCDKNSANESAPVFKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYMKSNNGITPTQQHQQVCEKEDPDCPKQDLRSRGLCLVPVSSTFPVSNVGTADFWTPTFGGTFR 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1377637 1380632 - CmoCh07G002810.1 Cmo07g00281 385589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00281 401 MobiDBLite consensus disorder prediction 247 284 - -
Cmo07g00281 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 288 342 IPR036638 GO:0046983
Cmo07g00281 401 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 388 - -
Cmo07g00281 401 CDD bHLH_AtbHLH_like 284 335 IPR045239 -
Cmo07g00281 401 Gene3D - 288 352 IPR036638 GO:0046983
Cmo07g00281 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 278 327 IPR011598 GO:0046983
Cmo07g00281 401 PANTHER TRANSCRIPTION FACTOR BHLH112 46 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00108 Cmo-Chr1:485292 Cmo07g00281 Cmo-Chr7:1377637 1.76E-32 dispersed
Cmo03g00746 Cmo-Chr3:6312424 Cmo07g00281 Cmo-Chr7:1377637 8.61E-30 dispersed
Cmo04g00999 Cmo-Chr4:5033010 Cmo07g00281 Cmo-Chr7:1377637 8.84E-66 dispersed
Cmo07g00281 Cmo-Chr7:1377637 Cmo16g00923 Cmo-Chr16:5660098 8.20E-57 dispersed
Cmo13g00717 Cmo-Chr13:7214808 Cmo07g00281 Cmo-Chr7:1377637 2.88E-52 wgd
Cmo03g00529 Cmo-Chr3:5415334 Cmo07g00281 Cmo-Chr7:1377637 3.94E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00281 - - bhj:120072732 476.478