Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00290 ATGAGCCACTTCTTCCTCAACCCCCCAAAACTACCCGCCCTAAGACCTTCTTCACAATCCTCTTTTTTTTCTCTGCTTTTGTGCTCTGCCATTTTCATCACCAACAAACTCATCAATTCAGACCCATCTGAAAATGGTCATCACCCCTTCCTTCATAACATCTGCAACATGGCTTACAACCAATCATCCTGCATTCAAATGCTCGCCTCTGAATTCCCCCTTCTTCAAGAAACCAAAACCACCAACGCGGCGAACTTCTTACAATCCTTCCTGAGGAAATCCACAAGCAAAATAGTCAACACCATCGAGAACGCCAAAGATCTCCGCCGTCGAATCAACAACCCACGCGGTGAAGCAGCTTTGGCCGACTGCGTCGAGCTCATGGAGATCTCAATGGATCGAATAACCGACTCGATTTTGGCTCTCAAGAGCAGAACGTGCGGCTCAATCGAAAATGCACACACATGGCTGAGTAGCGTGCTGACGAACCATGTGACGTGCTCGGACGAGATCGAGAATTCAATTTCGAAAACGGCGGCCATGGATTTAGGGGTTGAAGAGCTGATTGTGAGAGGGAGAAATTCATTGGGGATGTTGGTCTCGATTTGGGGATCGGGCAAAGAAGAGATGGGGTATCCGAGTTGGTTGAAGAAGGGAGATAGGAGGCTGTTGGAGGTTGTGGGGAGAGGAATGAAAGCGGATATAGTGGTGGCGAAGGACGGGAGCGGGAACTTCAAGACGGTGAAGGAGGCGGTTGAGGCGGTGCCGGACAAGAGCAAGAACAGAATTGTGATATATGTGAAGAAGGGGATTTATAAGGAGAATGTGGAAGTGGGGAAGAATAAGAAGAATGTTATGTTGGTCGGAGATGGAATGGATTCCACTATCATCACTGCTAGCCTCAACGTCGTTGATGGATCAACTACATTTAAGTCTGCAACTGTGGCCGCCGTGGGAGATGGATTTATAGCCCAAGACATCTGGTTCAGAAACACCGCCGGGCCGGAAAAGCACCAAGCGGTGGCACTTCGGGTTGGAGCCGACCAATCCGTCATAAACCGGTGTCGTATCGACGCTTATCAAGACACTCTCTACGCCCATACCAACCGCCAATTCTACCGCGATTCCACCATCACTGGCACCGTGGACTTCATTTTCGGCAACGCCGCCGTGGTATTACAGAACTGCAAAATCGAACCCCGACGTCCGATGAGCAACCAGGCCAACATGGTGACAGCGCAAGGCCGAACAGACCCAAATCAGAACACTGGAACTTCCATCCAAAAATGCCAAATCGTGGCAAGCTCCGACCTGGAGCCGGTTAAGAAGTCCATTAAGACATATTTAGGACGCCCATGGAAGGAGTATTCGAGGACCGTGGTTATGCAGTCCACACTCGGCGATCTCATAGATCCAGCGGGCTGGGCTGAGTGGAATGGGGACTTTGCATTGAAGATGCTGTACTATGGCGAGTATTCTAATAATGGGCCGGGCTCTAATGTTAGCAAACGAGTGAAATGGCCCGGTTACCATGTCATTACGAGCCCAGCAGTGGCCCAAAAGTTCACGGTGGACTCACTTATACAAGGAGCTGAATGGCTGGGCTCCTCAGGTGTGACTTTTATCCCAGGGCTGTGA 1638 50.24 MSHFFLNPPKLPALRPSSQSSFFSLLLCSAIFITNKLINSDPSENGHHPFLHNICNMAYNQSSCIQMLASEFPLLQETKTTNAANFLQSFLRKSTSKIVNTIENAKDLRRRINNPRGEAALADCVELMEISMDRITDSILALKSRTCGSIENAHTWLSSVLTNHVTCSDEIENSISKTAAMDLGVEELIVRGRNSLGMLVSIWGSGKEEMGYPSWLKKGDRRLLEVVGRGMKADIVVAKDGSGNFKTVKEAVEAVPDKSKNRIVIYVKKGIYKENVEVGKNKKNVMLVGDGMDSTIITASLNVVDGSTTFKSATVAAVGDGFIAQDIWFRNTAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYAHTNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRRPMSNQANMVTAQGRTDPNQNTGTSIQKCQIVASSDLEPVKKSIKTYLGRPWKEYSRTVVMQSTLGDLIDPAGWAEWNGDFALKMLYYGEYSNNGPGSNVSKRVKWPGYHVITSPAVAQKFTVDSLIQGAEWLGSSGVTFIPGL 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1415430 1417399 + CmoCh07G002900.1 Cmo07g00290 385598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00290 545 PANTHER PECTINESTERASE 19 544 - -
Cmo07g00290 545 TIGRFAM PME_inhib: pectinesterase inhibitor domain 23 173 IPR006501 GO:0004857
Cmo07g00290 545 ProSitePatterns Pectinesterase signature 1. 259 278 IPR018040 -
Cmo07g00290 545 Pfam Plant invertase/pectin methylesterase inhibitor 50 179 IPR006501 GO:0004857
Cmo07g00290 545 PANTHER PECTINESTERASE 19 544 - -
Cmo07g00290 545 SUPERFAMILY Pectin lyase-like 230 544 IPR011050 -
Cmo07g00290 545 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 200 IPR035513 -
Cmo07g00290 545 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 174 IPR035513 -
Cmo07g00290 545 SMART PMEI_2 46 198 IPR006501 GO:0004857
Cmo07g00290 545 CDD PMEI-like_4 61 202 - -
Cmo07g00290 545 Pfam Pectinesterase 234 530 IPR000070 GO:0030599|GO:0042545
Cmo07g00290 545 ProSitePatterns Pectinesterase signature 2. 378 387 IPR033131 -
Cmo07g00290 545 Gene3D - 228 545 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00290 Cmo-Chr7:1415430 Cmo17g01039 Cmo-Chr17:8822967 1.28E-153 dispersed
Cmo07g00290 Cmo-Chr7:1415430 Cmo02g01145 Cmo-Chr2:6934865 4.30E-151 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00290 K01051 - csv:101216377 863.988