Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00291 ATGTTCGATCCGGATATGTTCGATACGCATCATCATATGCTTGATATGACCTTTAACACTTCAGAAAACGAATTGGAGAATGTTAGAGACGATGATTTTGAGGCCAAATCGGGAGCTGAAATGTTAGAGGAAGCTTGTGGGAGTGACCAACAACGCTCCAAGAAGAAGCGCTATAATCGCCATACGCAGCACCAAATCCAAGAAATGGAAGCATTCTTTAAGGAATGTCCTCACCCAGATGACAAGCAGAGAATGGAGCTGAGCCGCGAGCTGGGTTTGGAGCCTTTGCAAGTCAAGTTTTGGTTCCAGAACAAGCGTACCCAAATGAAGGCCCAACACGAAAGACATGAAAATGCAATGTTAAAAGCCGATAATGAAAAGCTTCGAGCGGAGAATATTCGGTACAGAGAAGCATTCGCCCATTCAACATGCCCCAACTGCGGATCCTCCACAGCCCTCGGCGAAATGTCCTTCGAAGATCAACATTTGCGTATCGAGAATTCCCGTCTGCGAGATGAGATCGACCGAATGAACGGATATGCCCCAAAATGTGGAAAGCCACTGCCTTCTTCCTATTACCACCTCCCCTCCAACGCCCCCACGCGATCTCTCGACTTGGGCATCACAAATTTCGGTCAACAGTCGTGTTTCGTCGGAGAAATGTACGGAACCGCCGACTTTCTCCGCTCCATTTCCAGACCTTCTGAAGCCGACAAGCCGGTCATTGTGGAGTTGGCCGTTTCCGCTATGGATGAACTGACCCGGATGGCTCAGGCTGGGGAACCCTTGTGGGTTCCGGGTGATACCAAGTCCAGTGAAGTGGTGCTTAATGAATCCGAGTATTTGACCAGTTTCCGAGGCGGAATTGGGCCCAAATCGTTGGGCTTGAGAACTGAAGCTTCGCGTGTTTCGGCTATTGTGTTCATGAACCACGTGAAGCTTGTGGATATTTTTATGGATGCCACGCAATGGTCGACTGTGTTCTGTGGGATTGTTTCGAGAGCATCCACAGTGGAGGTTCTTTCCGCCGGCCTTCCTGGAAACTGCAACGGGGCCTTGCATGTGATGAGCGCTGAATTCCAAGTCCCATCGCCGCTGGTTCCGACTCGCGAAAACTACTTCGTAAGATATTGCAAACAGCACAGCGATGGCACATGGGCTGTGGCTGATGTTTCCTTGGACACTTTGACCCCTTCTCCCATCCCAAAGGGCCGACGGAGACCCTCTGGTTGTTTAATTCAAGAATTGCCCAACGGCTACTCTAAGATCACTTGGGTGGAACATGTAGAGGTCGACGAAACTGGCGTCCCTTCAATGTATAGACCGCTCGTTAATTCAGGCCTCGCTTTTGGAGCTAAACGATGGGTCGCTACGCTTGATAGGCAGTGTGAACGTCTAGCCACTTCCATGGCAACCACCATAGCGACCGGCGAATTACGCGTGATGTCGAGTATTGAGGGAAGGAAGAGTATGTTGAAGCTGGCTGAAAGAATGGTGACGAGCTTTTGCGCTGGCGTCGGCGCGTCCAGTATACACGCTTGGACGGCTTTGCCGGCCGCCGGCAGTGATGATGTTCGTGTTGTGACGAGGAAAAGCACCGATGAACCAGGGCGTCCACCTGGTGTTGTGCTTAGCGCGGCTACCTCTTTTTGGATCCCTGTTTCTCCTAAGGTTGTGTTTGATTTCCTTCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAACAGGGGCTTGGTTCAGGAAATGGCAAACATAGCCAACGGCCGCCACTCTGGAAATTGTGTCTCGTTGCTTCGTGTCAATAGTGCAAATTCGAGCCAGAGCAATATGCTGATACTACAAGAGAGCTGCACCGATTCCACAGGATCATACGTTGTTTATGCTCCGGTGGACACTGTTGCAATGAACGTGGTGCTAAGCGGTTGCGACCCGGATTACGTGGCGCTTTTACCATCGGGATTCGCCATACTTCCCGACGGACCCGCCGGCAGCAACGGCGGAGGAATTCTGGAGGTGGGGTCCGGTGGGTCACTAATCACTGTTGCATTTCAAATCCTGGTTGATTCAGTTCCAACGGCGAGACTTTCAATTGGATCGGTTGCCACCGTTAACAGTCTGATTAATTTAAGCAGTAGCAGAGGAAGAAGAGGAGTTGAGAAGTCAAGAACGCACCTTGAAAAGCACTTTCTGCAGCCTCGCACGGTGCTTTAG 2217 50.74 MFDPDMFDTHHHMLDMTFNTSENELENVRDDDFEAKSGAEMLEEACGSDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAMLKADNEKLRAENIRYREAFAHSTCPNCGSSTALGEMSFEDQHLRIENSRLRDEIDRMNGYAPKCGKPLPSSYYHLPSNAPTRSLDLGITNFGQQSCFVGEMYGTADFLRSISRPSEADKPVIVELAVSAMDELTRMAQAGEPLWVPGDTKSSEVVLNESEYLTSFRGGIGPKSLGLRTEASRVSAIVFMNHVKLVDIFMDATQWSTVFCGIVSRASTVEVLSAGLPGNCNGALHVMSAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVADVSLDTLTPSPIPKGRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPSMYRPLVNSGLAFGAKRWVATLDRQCERLATSMATTIATGELRVMSSIEGRKSMLKLAERMVTSFCAGVGASSIHAWTALPAAGSDDVRVVTRKSTDEPGRPPGVVLSAATSFWIPVSPKVVFDFLRKEKSRSEWDILSNRGLVQEMANIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVVYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPAGSNGGGILEVGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLINLSSSRGRRGVEKSRTHLEKHFLQPRTVL 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1422577 1428791 + CmoCh07G002910.1 Cmo07g00291 385599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00291 738 Gene3D - 249 470 IPR023393 -
Cmo07g00291 738 SUPERFAMILY Bet v1-like 237 466 - -
Cmo07g00291 738 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 21 720 - -
Cmo07g00291 738 Pfam START domain 245 465 IPR002913 GO:0008289
Cmo07g00291 738 Coils Coil 106 138 - -
Cmo07g00291 738 ProSiteProfiles START domain profile. 235 468 IPR002913 GO:0008289
Cmo07g00291 738 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Cmo07g00291 738 SUPERFAMILY Homeodomain-like 43 112 IPR009057 -
Cmo07g00291 738 SMART START_1 244 465 IPR002913 GO:0008289
Cmo07g00291 738 CDD homeodomain 54 113 IPR001356 GO:0003677
Cmo07g00291 738 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Cmo07g00291 738 SMART HOX_1 53 116 IPR001356 GO:0003677
Cmo07g00291 738 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Cmo07g00291 738 Gene3D - 42 128 - -
Cmo07g00291 738 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 720 IPR042160 -
Cmo07g00291 738 SUPERFAMILY Bet v1-like 487 705 - -
Cmo07g00291 738 CDD START_ArGLABRA2_like 239 464 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00291 Cmo13g00750 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00291 Cmo-Chr7:1422577 Cmo08g00893 Cmo-Chr8:5801325 0 dispersed
Cmo11g01907 Cmo-Chr11:13249775 Cmo07g00291 Cmo-Chr7:1422577 0 wgd
Cmo13g00750 Cmo-Chr13:7339496 Cmo07g00291 Cmo-Chr7:1422577 0 wgd
Cmo19g00954 Cmo-Chr19:8710347 Cmo07g00291 Cmo-Chr7:1422577 0 wgd
Cmo02g00167 Cmo-Chr2:799348 Cmo07g00291 Cmo-Chr7:1422577 0 wgd
Cmo20g00616 Cmo-Chr20:3019339 Cmo07g00291 Cmo-Chr7:1422577 0 wgd
Cmo03g00550 Cmo-Chr3:5496170 Cmo07g00291 Cmo-Chr7:1422577 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10090 PF01852 START 3.30E-52 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00291 K09338 - csv:101209093 1223.38