Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00311 | ATGGACAAAGGATGGGGTCTTACCCTTCGTGATTCCGACCACTCTATTGGGTTCTTCTCAAACAAGCCACCCCCATCCACTGTCAATTCTTTTCACAGCGTTATGTTCCAAGGTATTGATTTTCCCGGGAAACCTGGCCGGACTGACGACGACAAGCCTGCTCTGCCGCTTCCCGATCACACCCGGTTGCCCGTCAACGAGGTCGACTTTTTTTCCGATAATAAAAGGGTGGTTGATGATAGGGAGGATGAAGACTCCAAACCACCGGTTAATATCATCGCCACCGCTGTCAATAAAGACCACAACAATTTCACTGCTCCCACAACTGCCTTCAATCGTGTTAATACTGGTTTGCATCTGTTAACTGCGAACACCGGAAGCGATCAATCGACGGTGGATGATGGGATTTCATCGGATGGAGAAGATAAACGAGCCAAAAACGAGCTAGCGCAGCTTCAAGTGGAGCTTCAGCGTATGAACGCCGAGAATCACAAGCTGAGGGACATGCTAAGCCATGTGAGAAACAACTACACTACCTTACAAATGCATATCTCCACCTTTATGCAACAGCAGCAACAGCAACAACAACAAAATCAGCAAAATCAGGCCTTGGAATCCGCTCATGAACGACAGCCCACGGATAAACATGATCAAGTTGGGAAGGTTGTAATTCCGAGGCAATTTATGGATCTGGGACCCACTGGGAAGACAGGGGGAGGCGATCATGAATTATTCCATTCATCATCGGATGAAAGAACTGGTTCTGGGTCTCCGTTGAACAACACAGAAACCGCCTCCAAAAAGAGCACCGGAAGAGACCAGGAAACGGGTCCTTCCGATCAGGAGAATTCCAATTTACGATCAGATGGAAAAAGATCCATGGGTAGAGAAGAAAGCCCAGAGTCAGAATCTCACGGGTGGGGTGGTCCTAATAAAGCCCCCAGATTGAACCCTTCTTCTAAACCACTTGATCAACAATCCACCGAAGCCACCATGAGAAAAGCCCGTGTCTCAGTCCGTGCTCGATCAGAAGCTCCCATGATTTCTGATGGGTGTCAATGGCGAAAATATGGCCAAAAAATGGCTAAAGGAAACCCATGTCCACGGGCGTATTATCGGTGCACAATGGCAGTGGGTTGCCCTGTTCGGAAACAAGTTCAACGTTGCGCTGAAGACACGACTATATTGATAACAACCTATGAGGGTAACCACAATCACCCACTTCCGCCGGCTGCGATGGCCATGGCGTCCACCACGACGGCGGCGGCTAGCATGTTGTTGTCAGGGTCCATGTCAAGTGCGGACCATAATCTAATGAACCCAAATTTATTGGCTCGAGCCATACTCCCATGTTCCTCAAGCATGGCTACAATTTCAGCTTCGGCTCCATTTCCAACCATCACATTAGACCTCACTCACACCCCGAACCCATTGCAGTTCCAAAGACCAGCACCCACGCCGTTCCACGTGCCGTTCGAAGCCGGACAACCACCGTCTGCCGCCGCCCAATTGCCGCAGGTTTTGGGGCAAGCGCTATACAATCAATCAAAATTCTCGGGGCTACAGCTCTCTCATGATATGGGGGCCAATTCCTCCCATTTGGGTCACCACCAAATTTCACAACCGGCCGTGGCATCATCCCAGCCTAGTGGTGCTTCTTTTGCCGACACGTTAAGTGCCGCCACCGCCGCTATCACCGCGGATCCGAACTTCACAGCCGCTCTAGCCGCCGCTATCTCCTCCATCATCGGCGGAGCTCATTCAAATAATAATAACACCACCCCCACCAATACTACGTCTACATCAAACAACAACGGAAGCAGCAACAACAACAACACCAAAATTAGCAGTTTCCCAGGAAAGTAG | 1866 | 50.0 | MDKGWGLTLRDSDHSIGFFSNKPPPSTVNSFHSVMFQGIDFPGKPGRTDDDKPALPLPDHTRLPVNEVDFFSDNKRVVDDREDEDSKPPVNIIATAVNKDHNNFTAPTTAFNRVNTGLHLLTANTGSDQSTVDDGISSDGEDKRAKNELAQLQVELQRMNAENHKLRDMLSHVRNNYTTLQMHISTFMQQQQQQQQQNQQNQALESAHERQPTDKHDQVGKVVIPRQFMDLGPTGKTGGGDHELFHSSSDERTGSGSPLNNTETASKKSTGRDQETGPSDQENSNLRSDGKRSMGREESPESESHGWGGPNKAPRLNPSSKPLDQQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHTPNPLQFQRPAPTPFHVPFEAGQPPSAAAQLPQVLGQALYNQSKFSGLQLSHDMGANSSHLGHHQISQPAVASSQPSGASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNNNNTTPTNTTSTSNNNGSSNNNNTKISSFPGK | 621 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1500016 | 1502607 | - | CmoCh07G003110.1 | Cmo07g00311 | 385619 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00311 | 621 | SUPERFAMILY | WRKY DNA-binding domain | 341 | 409 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo07g00311 | 621 | MobiDBLite | consensus disorder prediction | 125 | 144 | - | - | |
Cmo07g00311 | 621 | ProSiteProfiles | WRKY domain profile. | 343 | 409 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo07g00311 | 621 | MobiDBLite | consensus disorder prediction | 188 | 336 | - | - | |
Cmo07g00311 | 621 | MobiDBLite | consensus disorder prediction | 529 | 552 | - | - | |
Cmo07g00311 | 621 | Coils | Coil | 187 | 207 | - | - | |
Cmo07g00311 | 621 | MobiDBLite | consensus disorder prediction | 285 | 303 | - | - | |
Cmo07g00311 | 621 | MobiDBLite | consensus disorder prediction | 585 | 621 | - | - | |
Cmo07g00311 | 621 | PANTHER | WRKY TRANSCRIPTION FACTOR 6 | 58 | 592 | - | - | |
Cmo07g00311 | 621 | Coils | Coil | 142 | 176 | - | - | |
Cmo07g00311 | 621 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 58 | 592 | IPR044810 | GO:0003700 | |
Cmo07g00311 | 621 | MobiDBLite | consensus disorder prediction | 188 | 207 | - | - | |
Cmo07g00311 | 621 | Gene3D | WRKY domain | 333 | 410 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo07g00311 | 621 | SMART | WRKY_cls | 348 | 408 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo07g00311 | 621 | MobiDBLite | consensus disorder prediction | 318 | 333 | - | - | |
Cmo07g00311 | 621 | MobiDBLite | consensus disorder prediction | 250 | 267 | - | - | |
Cmo07g00311 | 621 | Pfam | WRKY DNA -binding domain | 350 | 407 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00573 | Cmo07g00311 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00311 | Cmo-Chr7:1500016 | Cmo10g00198 | Cmo-Chr10:885235 | 3.29E-50 | dispersed | |
Cmo11g01889 | Cmo-Chr11:13133736 | Cmo07g00311 | Cmo-Chr7:1500016 | 5.38E-141 | wgd | |
Cmo19g00938 | Cmo-Chr19:8631530 | Cmo07g00311 | Cmo-Chr7:1500016 | 8.95E-118 | wgd | |
Cmo03g00573 | Cmo-Chr3:5582475 | Cmo07g00311 | Cmo-Chr7:1500016 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10092 | PF03106 | WRKY | 4.60E-24 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00311 | - | - | mcha:111012275 | 841.262 |