Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00311 ATGGACAAAGGATGGGGTCTTACCCTTCGTGATTCCGACCACTCTATTGGGTTCTTCTCAAACAAGCCACCCCCATCCACTGTCAATTCTTTTCACAGCGTTATGTTCCAAGGTATTGATTTTCCCGGGAAACCTGGCCGGACTGACGACGACAAGCCTGCTCTGCCGCTTCCCGATCACACCCGGTTGCCCGTCAACGAGGTCGACTTTTTTTCCGATAATAAAAGGGTGGTTGATGATAGGGAGGATGAAGACTCCAAACCACCGGTTAATATCATCGCCACCGCTGTCAATAAAGACCACAACAATTTCACTGCTCCCACAACTGCCTTCAATCGTGTTAATACTGGTTTGCATCTGTTAACTGCGAACACCGGAAGCGATCAATCGACGGTGGATGATGGGATTTCATCGGATGGAGAAGATAAACGAGCCAAAAACGAGCTAGCGCAGCTTCAAGTGGAGCTTCAGCGTATGAACGCCGAGAATCACAAGCTGAGGGACATGCTAAGCCATGTGAGAAACAACTACACTACCTTACAAATGCATATCTCCACCTTTATGCAACAGCAGCAACAGCAACAACAACAAAATCAGCAAAATCAGGCCTTGGAATCCGCTCATGAACGACAGCCCACGGATAAACATGATCAAGTTGGGAAGGTTGTAATTCCGAGGCAATTTATGGATCTGGGACCCACTGGGAAGACAGGGGGAGGCGATCATGAATTATTCCATTCATCATCGGATGAAAGAACTGGTTCTGGGTCTCCGTTGAACAACACAGAAACCGCCTCCAAAAAGAGCACCGGAAGAGACCAGGAAACGGGTCCTTCCGATCAGGAGAATTCCAATTTACGATCAGATGGAAAAAGATCCATGGGTAGAGAAGAAAGCCCAGAGTCAGAATCTCACGGGTGGGGTGGTCCTAATAAAGCCCCCAGATTGAACCCTTCTTCTAAACCACTTGATCAACAATCCACCGAAGCCACCATGAGAAAAGCCCGTGTCTCAGTCCGTGCTCGATCAGAAGCTCCCATGATTTCTGATGGGTGTCAATGGCGAAAATATGGCCAAAAAATGGCTAAAGGAAACCCATGTCCACGGGCGTATTATCGGTGCACAATGGCAGTGGGTTGCCCTGTTCGGAAACAAGTTCAACGTTGCGCTGAAGACACGACTATATTGATAACAACCTATGAGGGTAACCACAATCACCCACTTCCGCCGGCTGCGATGGCCATGGCGTCCACCACGACGGCGGCGGCTAGCATGTTGTTGTCAGGGTCCATGTCAAGTGCGGACCATAATCTAATGAACCCAAATTTATTGGCTCGAGCCATACTCCCATGTTCCTCAAGCATGGCTACAATTTCAGCTTCGGCTCCATTTCCAACCATCACATTAGACCTCACTCACACCCCGAACCCATTGCAGTTCCAAAGACCAGCACCCACGCCGTTCCACGTGCCGTTCGAAGCCGGACAACCACCGTCTGCCGCCGCCCAATTGCCGCAGGTTTTGGGGCAAGCGCTATACAATCAATCAAAATTCTCGGGGCTACAGCTCTCTCATGATATGGGGGCCAATTCCTCCCATTTGGGTCACCACCAAATTTCACAACCGGCCGTGGCATCATCCCAGCCTAGTGGTGCTTCTTTTGCCGACACGTTAAGTGCCGCCACCGCCGCTATCACCGCGGATCCGAACTTCACAGCCGCTCTAGCCGCCGCTATCTCCTCCATCATCGGCGGAGCTCATTCAAATAATAATAACACCACCCCCACCAATACTACGTCTACATCAAACAACAACGGAAGCAGCAACAACAACAACACCAAAATTAGCAGTTTCCCAGGAAAGTAG 1866 50.0 MDKGWGLTLRDSDHSIGFFSNKPPPSTVNSFHSVMFQGIDFPGKPGRTDDDKPALPLPDHTRLPVNEVDFFSDNKRVVDDREDEDSKPPVNIIATAVNKDHNNFTAPTTAFNRVNTGLHLLTANTGSDQSTVDDGISSDGEDKRAKNELAQLQVELQRMNAENHKLRDMLSHVRNNYTTLQMHISTFMQQQQQQQQQNQQNQALESAHERQPTDKHDQVGKVVIPRQFMDLGPTGKTGGGDHELFHSSSDERTGSGSPLNNTETASKKSTGRDQETGPSDQENSNLRSDGKRSMGREESPESESHGWGGPNKAPRLNPSSKPLDQQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHTPNPLQFQRPAPTPFHVPFEAGQPPSAAAQLPQVLGQALYNQSKFSGLQLSHDMGANSSHLGHHQISQPAVASSQPSGASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNNNNTTPTNTTSTSNNNGSSNNNNTKISSFPGK 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1500016 1502607 - CmoCh07G003110.1 Cmo07g00311 385619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00311 621 SUPERFAMILY WRKY DNA-binding domain 341 409 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo07g00311 621 MobiDBLite consensus disorder prediction 125 144 - -
Cmo07g00311 621 ProSiteProfiles WRKY domain profile. 343 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo07g00311 621 MobiDBLite consensus disorder prediction 188 336 - -
Cmo07g00311 621 MobiDBLite consensus disorder prediction 529 552 - -
Cmo07g00311 621 Coils Coil 187 207 - -
Cmo07g00311 621 MobiDBLite consensus disorder prediction 285 303 - -
Cmo07g00311 621 MobiDBLite consensus disorder prediction 585 621 - -
Cmo07g00311 621 PANTHER WRKY TRANSCRIPTION FACTOR 6 58 592 - -
Cmo07g00311 621 Coils Coil 142 176 - -
Cmo07g00311 621 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 58 592 IPR044810 GO:0003700
Cmo07g00311 621 MobiDBLite consensus disorder prediction 188 207 - -
Cmo07g00311 621 Gene3D WRKY domain 333 410 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo07g00311 621 SMART WRKY_cls 348 408 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo07g00311 621 MobiDBLite consensus disorder prediction 318 333 - -
Cmo07g00311 621 MobiDBLite consensus disorder prediction 250 267 - -
Cmo07g00311 621 Pfam WRKY DNA -binding domain 350 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00573 Cmo07g00311 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00311 Cmo-Chr7:1500016 Cmo10g00198 Cmo-Chr10:885235 3.29E-50 dispersed
Cmo11g01889 Cmo-Chr11:13133736 Cmo07g00311 Cmo-Chr7:1500016 5.38E-141 wgd
Cmo19g00938 Cmo-Chr19:8631530 Cmo07g00311 Cmo-Chr7:1500016 8.95E-118 wgd
Cmo03g00573 Cmo-Chr3:5582475 Cmo07g00311 Cmo-Chr7:1500016 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10092 PF03106 WRKY 4.60E-24 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00311 - - mcha:111012275 841.262