Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00320 ATGGATGGTCCTGGCGGAAGTTCTTCAGGTATGATGAATTTTGGAGATCAAAATAATAGTAATAATGGGTTATGTTCTTCCATGATGATGATGATGCCTTTAATGTCTTCTCACCACCACCACCACCACCATCAAGGAGATGCATGTAATCCATTTCCTCCTCTTCCTTCTCCTAATTACACTACCAACAACATCAACAACACCAACACTTCTTCTTCTTCTAACCCTATTTGTTACTTCATGGATGAACACACCACCACCACCACCACCAACAACAACAATGATAATGGGTGTTGTAATGCAAATTCGTCTTCTTGTGAATTGAAGGCCAAAATTATGGGTCATCCTCACTACCACCGCCTCCTTGCTGCCTATGTCAATTGTCGAAAGGTGGGGGCGCCGCCGGATGTGGTGGCGAGGCTTGAAGGAGCGTGTGCATCTGCACTCACAATCAGTGGTACGTCTTGTACGGGGTGTATTGGTGAAGATCCGGCTCTTGACCAGTTCATGGAAGCTTATTGCGAGATGCTCACTAAATATGAACAAGAACTTTCCAAACCCTTTAGGGATGCCATGCTTTTTCTTCACCGAATTGAGTGCCAATTCAAAGCCCTCTCCATTTCCTCCTCCGACGCTGTTTGTGGTGAGGCATTTGAAAGGAATGGTTCATCTGAAGAGGAAGTTGATATCAATGGCCACTCTATCGACCCTCAAGCCGAAGACCGTGAACTGAAAGGTCAGCTCCTCCGCAAGTACAGTGGATGCTTGGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTGCCTAAGGAGGCCAGACAACAGCTCCTTGACTGGTGGAGTAGACATTACAAGTGGCCTTATCCATCTGAATCACAGAAGCTAGCATTGGCTCAATCCACTGGGTTGGATCAAAAGCAAATCAACAACTGGTTCATCAACCAAAGGAAAAGGCACTGGAAACCCTCTGAAGATATGCAGTTCGTGGTGATGGATGGTGGGCATCCGCAGTATTACATGGACACCGTGTTGGGCAATCCTTTTCCCTTGGATATCTCTCCCACTCTACTCTAA 1086 46.13 MDGPGGSSSGMMNFGDQNNSNNGLCSSMMMMMPLMSSHHHHHHHQGDACNPFPPLPSPNYTTNNINNTNTSSSSNPICYFMDEHTTTTTTNNNNDNGCCNANSSSCELKAKIMGHPHYHRLLAAYVNCRKVGAPPDVVARLEGACASALTISGTSCTGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLHRIECQFKALSISSSDAVCGEAFERNGSSEEEVDINGHSIDPQAEDRELKGQLLRKYSGCLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDGGHPQYYMDTVLGNPFPLDISPTLL 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1518538 1521889 - CmoCh07G003200.1 Cmo07g00320 385628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00320 361 CDD homeodomain 275 327 IPR001356 GO:0003677
Cmo07g00320 361 Gene3D - 268 330 - -
Cmo07g00320 361 SMART HOX_1 265 330 IPR001356 GO:0003677
Cmo07g00320 361 SMART KNOX1_2 106 150 IPR005540 GO:0003677|GO:0005634
Cmo07g00320 361 ProSiteProfiles ELK domain profile. 243 263 IPR005539 GO:0003677
Cmo07g00320 361 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 5 350 - -
Cmo07g00320 361 Pfam KNOX2 domain 159 205 IPR005541 GO:0003677|GO:0005634
Cmo07g00320 361 Pfam KNOX1 domain 108 146 IPR005540 GO:0003677|GO:0005634
Cmo07g00320 361 SMART KNOX2_2 156 207 IPR005541 GO:0003677|GO:0005634
Cmo07g00320 361 PANTHER - 5 350 - -
Cmo07g00320 361 SUPERFAMILY Homeodomain-like 265 340 IPR009057 -
Cmo07g00320 361 Pfam ELK domain 243 264 IPR005539 GO:0003677
Cmo07g00320 361 ProSitePatterns 'Homeobox' domain signature. 301 324 IPR017970 GO:0000981|GO:0006355
Cmo07g00320 361 Pfam Homeobox KN domain 283 322 IPR008422 GO:0003677|GO:0006355
Cmo07g00320 361 ProSiteProfiles 'Homeobox' domain profile. 263 326 IPR001356 GO:0003677
Cmo07g00320 361 SMART ELK_2 243 264 IPR005539 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01817 Cmo-Chr1:13322815 Cmo07g00320 Cmo-Chr7:1518538 2.92E-87 dispersed
Cmo07g00320 Cmo-Chr7:1518538 Cmo09g00320 Cmo-Chr9:1391789 1.91E-88 dispersed
Cmo11g01880 Cmo-Chr11:13095540 Cmo07g00320 Cmo-Chr7:1518538 3.76E-120 wgd
Cmo03g00580 Cmo-Chr3:5622973 Cmo07g00320 Cmo-Chr7:1518538 7.87E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10093 PF03791 KNOX2 4.30E-20 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00320 - - cmax:111497440 634.795