Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00344 ATGCAAGCAGCTCCGAATCGTCAGTCTTCATCTGTGATCCATGAGATGTATCACCAGTCTGTGCAAGGGATGGATTCTTTCTATTTATCTCATTTCCACGTCTTGGAAAACAATGCCTCTCCCGATGCAAGCAGTCAGGGAAACAGTGTTATTTCTTCTTCCTATAAGGATCAGTTCTTCACTCTCGAATCGTTCCCGGCTACTGCTTATCTGAGCGCCTGTAATTCCCCTTCTGCTGTTAGTGTTCTGTCTTCCAGGAGCCCCTTCTCACCTCAAGGGTCTCAAACTTGCTCTTCTGATCAACATCATTCCTTTGACAACACATGTGGATCGCCGCAAAGTGGATGCTCGGTAACTGATGATGATTATGAATTGAAGCACAAGCTGAAGGAATTAGAGATTTCTTTGTTGGGACCAGAAACTGATATTGTGGATAGCTGCTACTGTTCTTTCAGGGGTGGGGAGAACCGAGATGCTTCAATGGCAAGGTGGAACTGGAATCAAATGATCGAAACAATTCCTAAACTAAGTCTTCGGGACACACTTATCCGGTGTGCTCAAGCAATTCATGAGGCTGATTTAAATGCGGCGACATCATTTATGGATGTTTTGGGGCAAATGGTTTCGGTCTCTGGTGATCCAGCCCAGAGGTTGGGAGCTTACTTGTTGGAAGGGCTTAGAGCGAGGTTGGAGCGATCTGGAAGTGCAATATACAAGGCCCTAAAGTGCGAAGAGCCGTCAAGCTCTGAACTTATGTCCTATATGTCTATTCTATTCCAGATATGCCCATACTTCAAATTTGCTTACACATCTGCAAATGCTTTCATTTGGGAGGCTATGGTAAATGAACCCGTGATCCACATCATTGATTTTCAAATTGCACAGGGTAGTCAGTATATACCTCTCATTGAGGATCTTGCCAATCGGCCTGGTGGACCCCCAGTTCTTCTTCACATTACGGGTGTGGATGATTCCCAATCAGCTCATGCTCGAGGAGGGGGACTTCAAATTGTGGGACAGAAGCTAGCTCAACTGGCTCAGTCTAAAGGAATTCCCTTCCAATTTCATGCTGCTGCAATGTCTGGTTGCAAGGTCGAGCGCAGTGATCTTAGAATACGACCTGGAGAAGCCTTGGCTGTAAATTTTCCATATGCCTTGCACCACATGCCAGATGAGAGCGTGAGCACACAGAACCATCGAGATCGTCTTCTAAGGCTGGTTAAGAGTCTATCACCAAAGATAGTAACTATTGTTGAGCAGGAATCCAACACCAACACATCCCCGTTCTTTTTACGTTTTATAGAGACGCTGGACTATTATACTGCTATGTTCGAGTCAATAGACGTAGCTCGTTCGAGAGACGACAAGCAACGAATCAGGGCAGAGCAGCACTGTGTTGCCCGAGACATAGTGAACATGGTAGCATGTGAGGGATTTGAAAGAGTAGAACGTCATGAACTCCATGGGAAGTGGATGATGAGAATGAAAATGGCTGGCTTTACTCAATATCCAATGAGCTCCTCTGTAACTGGAGCCGTCAAGAATTTGTTGAGGGACTACAACGAGAACTACAGACTCCTAGAAGCGGAAGGAGCTCTCAACCTTGGCTGGAAAAACAGAGCAATGGCAACCTCCTCTGCATGGAGATGA 1650 45.88 MQAAPNRQSSSVIHEMYHQSVQGMDSFYLSHFHVLENNASPDASSQGNSVISSSYKDQFFTLESFPATAYLSACNSPSAVSVLSSRSPFSPQGSQTCSSDQHHSFDNTCGSPQSGCSVTDDDYELKHKLKELEISLLGPETDIVDSCYCSFRGGENRDASMARWNWNQMIETIPKLSLRDTLIRCAQAIHEADLNAATSFMDVLGQMVSVSGDPAQRLGAYLLEGLRARLERSGSAIYKALKCEEPSSSELMSYMSILFQICPYFKFAYTSANAFIWEAMVNEPVIHIIDFQIAQGSQYIPLIEDLANRPGGPPVLLHITGVDDSQSAHARGGGLQIVGQKLAQLAQSKGIPFQFHAAAMSGCKVERSDLRIRPGEALAVNFPYALHHMPDESVSTQNHRDRLLRLVKSLSPKIVTIVEQESNTNTSPFFLRFIETLDYYTAMFESIDVARSRDDKQRIRAEQHCVARDIVNMVACEGFERVERHELHGKWMMRMKMAGFTQYPMSSSVTGAVKNLLRDYNENYRLLEAEGALNLGWKNRAMATSSAWR 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1601636 1603285 - CmoCh07G003440.1 Cmo07g00344 385652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00344 549 Pfam GRAS domain family 178 549 IPR005202 -
Cmo07g00344 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 19 548 IPR005202 -
Cmo07g00344 549 ProSiteProfiles GRAS family profile. 169 549 IPR005202 -
Cmo07g00344 549 PANTHER SCARECROW-LIKE PROTEIN 13 19 548 IPR030005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00344 Cmo-Chr7:1601636 Cmo20g00673 Cmo-Chr20:3276967 0 dispersed
Cmo03g00608 Cmo-Chr3:5732226 Cmo07g00344 Cmo-Chr7:1601636 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10094 PF03514 GRAS 1.00E-122 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00344 - - mcha:111005597 943.34