Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00355 ATGGCCTCAATTGCTGGTCCCAAAGCTTCCTCAAATCCGCCACAAAAAACAGCCAATGGTGCAATGGCTAATGGGAAACAAACATCAACTGAAGTAGATTCCCCTCACAATGAAGCTAGAAGCTCAGTAGATCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTATATGTAGAGGGAGCACGAGCAGTGATATAAGTGAGGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCATAAAGCAAATGATTTGAAATGGGAGGCCATTCAAGTTGTTCGTGCCAAAGATGGGGCGATGGGATTAAGCCATTTTAGACTTTTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGAGGAACAAAATGTCATTTTGCAATGAAGGTTATGGATAAAAATACTTTAGCCAGTCGTAAAAAATCGCTTCGGGCGCAAACCGAAAGAGAAATACTTCAATCCCTTGATCACCCTTTCCTTCCAACATTATACACTCACTTTGAGACAGAGAAATTCTCATGCTTGGTGATGGAGTTCTGCCCTGGAGGAGACTTGCACACTCTTAGACAGAGGCAACCAGGGAAGCATTTTCCTGAGCATGCAGTGAAATTCTATGTAGCAGAGGTTCTTCTTGCACTGGAATATCTGCACATGCTTGGGATTGTGTACCGTGATCTTAAGCCAGAGAATATTCTCGTGAGGGAAGATGGACACATAATGCTTTCAGATTTTGATCTATCTCTCCGTTGTGCTGTTAGTCCAACTCTTGTTAAAAATCTCTCTGCAGAGTCTGAGGCTTTAAGAAAGAACACAGGCTACTGCGTGCAGCCTGCTTGCATTGAGCCATCCTGCATCCAACCATCTTGTGTGGTTCCTACGACCTGCTTCGCACCTCACCTCTTTTCTAGTAAGTCGAAGAAGGATCGGAAGCCGAAAATTGAAGTGGGGAATCAGGTCAGTCCATTGCCAGAGCTCATTGCAGAGCCAACTGATGCTCGATCCATGTCTTTCGTTGGTACTCATGAGTACTTGGCACCTGAGATCATCAAGGGTGAAGGGCATGGAAGTGCTGTGGATTGGTGGACTTTTGGTATTTTTCTATATGAGCTACTATTTGGTAAAACTCCTTTTAAGGGGTCTGGAAATCGAGCTACGTTGTTCAACATTGTCGGTCAGCCACTTCGGTTTCCTGATGCACCAGTTGTGAGTTTTGCTGCAAAGGATCTCATAAGAGGATTGCTAGTGAAGAAACCAGAACAAAGATTGGGTAATGAACGTGGAGCAACTGAGATCAAGCAGCATCCTTTTTTTGAAGGTGTGAACTGGGCATTAATACGTTGTGCTACTCCTCCTGAAATCCCAAAGCCGGTTGAGATTGAGAGAATACCACACGCACACGCAGTGGCATCGACCAGTTTAAAGGCCGTTGCTATTGCAGCTGCTGCAGCAGATAAAAAAGCATCCGATAACTATCTCGAGTTCGATTTCTTTTAG 1524 44.03 MASIAGPKASSNPPQKTANGAMANGKQTSTEVDSPHNEARSSVDQEKKTSEYGSVKSSICRGSTSSDISEESSCSSFSSSISKPHKANDLKWEAIQVVRAKDGAMGLSHFRLLKKLGCGDIGSVYLSELRGTKCHFAMKVMDKNTLASRKKSLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEHAVKFYVAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRCAVSPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFAPHLFSSKSKKDRKPKIEVGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPVVSFAAKDLIRGLLVKKPEQRLGNERGATEIKQHPFFEGVNWALIRCATPPEIPKPVEIERIPHAHAVASTSLKAVAIAAAAADKKASDNYLEFDFF 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1640794 1643872 - CmoCh07G003550.1 Cmo07g00355 385663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00355 507 MobiDBLite consensus disorder prediction 52 83 - -
Cmo07g00355 507 SUPERFAMILY Protein kinase-like (PK-like) 87 473 IPR011009 -
Cmo07g00355 507 PANTHER FLIPPASE KINASE 1-RELATED 54 507 - -
Cmo07g00355 507 Gene3D Transferase(Phosphotransferase) domain 1 341 465 - -
Cmo07g00355 507 MobiDBLite consensus disorder prediction 1 83 - -
Cmo07g00355 507 Gene3D Transferase(Phosphotransferase) domain 1 194 261 - -
Cmo07g00355 507 Pfam Protein kinase domain 344 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00355 507 Pfam Protein kinase domain 111 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00355 507 SMART serkin_6 110 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00355 507 MobiDBLite consensus disorder prediction 37 51 - -
Cmo07g00355 507 CDD STKc_phototropin_like 108 470 - -
Cmo07g00355 507 Gene3D Phosphorylase Kinase; domain 1 108 193 - -
Cmo07g00355 507 MobiDBLite consensus disorder prediction 1 36 - -
Cmo07g00355 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Cmo07g00355 507 ProSiteProfiles Protein kinase domain profile. 110 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00355 507 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 54 507 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00355 Cmo-Chr7:1640794 Cmo18g00610 Cmo-Chr18:7402842 0 dispersed
Cmo12g01248 Cmo-Chr12:11070285 Cmo07g00355 Cmo-Chr7:1640794 1.63E-153 dispersed
Cmo03g00624 Cmo-Chr3:5785792 Cmo07g00355 Cmo-Chr7:1640794 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74454 PF00069 Pkinase 1.70E-38 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00355 K08286 - csv:101209748 849.736