Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00367 ATGTTTCCAAGACTTGTGAATCCTGACGGAGATATCCAGATCCATGGCAGCCATGGTTCTGTTGCTTCCGACCTCACTCATCCCCACAGGGGTGATCCTTGTCTCGTTTTGACTTCAGATCCCAAACCTCGACTCCGATGGACTGCCGATCTTCACGAGCGATTCGTCGATGCTGTTACTCAACTCGGTGGTGCTAACAAAGCTACACCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATTTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGGGTGAGGCCTCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTATCAGTAATTTCTCTCCTGACTTGCCAATTTCTGAAATGACCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAGTTACATCTGCAAGTTGAGGCAGAGAAGCATCTACGAATTCGTCAGGATGCCGAGCGAAGATATTTGGCGATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGGAGGTGCGGTTTCGGACTCGGACAGCAAGAAGTCTCAAGGACTAGATCGTAAGAGCCCGAGAAGTTCCTCGATCGACCCTCTTGGTTTCTATGCTTCGCAATCACAGGGGATGGAAAGAGCGAATGGCACAGAAGAATTGCAAGGTAATCCTCCTTACCAAAGGGCTGATTGTTCGACCGAAAGCTGCCTAACCTCGAACGAAAGTCCTGGGGGATTGACTATGGAGAAATCTCCTGTGGCAAGCAAGAAAAACATAGTTAACTTGGATTCAGCAAATGCATCTTTGATTTGGGATGAAGCTAGGGAAGGAATACAAGATGCTAATATCATCCAAATTAACCATCACGGCGTATCCGAGTGCGACATGCAAAGGGCCGATGGGAGAGAGAAGCGCAGCGACGCAGTGACACCGAAGGGAATCCAATTGTTCTATCTTCTTCTTCCCTTGATCATCAAACACTCGAGAGCTACTCAGAAAGTGGCGCCCAATATTGGGGGATGCAGCCGTAGATCTAGGTAA 1086 46.5 MFPRLVNPDGDIQIHGSHGSVASDLTHPHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGANKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSISNFSPDLPISEMTDGYEVKEALRAQMEVQSKLHLQVEAEKHLRIRQDAERRYLAMLERACKMLADQFIGGAVSDSDSKKSQGLDRKSPRSSSIDPLGFYASQSQGMERANGTEELQGNPPYQRADCSTESCLTSNESPGGLTMEKSPVASKKNIVNLDSANASLIWDEAREGIQDANIIQINHHGVSECDMQRADGREKRSDAVTPKGIQLFYLLLPLIIKHSRATQKVAPNIGGCSRRSR 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1675620 1680532 + CmoCh07G003670.1 Cmo07g00367 385675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00367 361 MobiDBLite consensus disorder prediction 191 217 - -
Cmo07g00367 361 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
Cmo07g00367 361 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 15 307 - -
Cmo07g00367 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Cmo07g00367 361 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Cmo07g00367 361 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Cmo07g00367 361 Gene3D - 41 99 - -
Cmo07g00367 361 MobiDBLite consensus disorder prediction 231 265 - -
Cmo07g00367 361 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 15 307 IPR044848 GO:0003700
Cmo07g00367 361 MobiDBLite consensus disorder prediction 231 261 - -
Cmo07g00367 361 MobiDBLite consensus disorder prediction 1 29 - -
Cmo07g00367 361 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00367 Cmo-Chr7:1675620 Cmo14g01946 Cmo-Chr14:14393688 2.52E-63 dispersed
Cmo03g00638 Cmo-Chr3:5845977 Cmo07g00367 Cmo-Chr7:1675620 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10096 PF00249 Myb_DNA-binding 5.10E-06 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00367 - - csv:105435941 555.058