Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00368 ATGTTTCAACAACAAAGAGCTCATAACTCGAGCTTGATGGAACCCACAAATGGAAGTAATGGTAACAGCAACAACTCGAATTCGGCCTCAAAGCAGAGACTACGATGGACAAACGACCTTCACGAAGGATTTGTCAATGCAGTGGTACAACTTGGAGGCCCAGATCGTGCTACACCAAAAGGTGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCATGTCAAAAGCCACCTGCAGAAATATCGACTCGCAAAATACGTTCCTGACTCCTCATCTACTGAAGTGCACAAGTGGTTCACTCTTTTTGTTGTATTGTTGATGCAAGGGAAAAAGGCTGACAAGAAGGATTCTGGTGACATTCTATCAAATATTGATGGCTCATCGGGAATGCAAATCACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGGCTGCATGAACAATTAGAGGTCCAGAGACAGCTACAGTTACGGATTGAAGCTCAAGGCAAGTACCTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGCAGCTCCAGTTGCTTCTCCCTTATCAGCTTCTGTTTCTGGTGACAACTGCCCAGAAACTGATAAAAACGACCCGTCAACACCTGTGCCCACATCTGAGTCTCCTCGCCAAGAGAAAGCATCAAAGGAATCTGCCCAAGCCAAGAGTATCTCTATTGATGATTCTTTCCCGTCTCATCACGAACCATTGACACCAGATTCCGGTTGCCATGGCTCCCTAGATGACAGCCCAAGGCCAGTGAAGAAGCCAAGGCAGTACAGGGATGGTGCATGTGCCAAATCAGAGATGATGCTTGCACATCAAATACTAAAGTCAAGTCTAAACTCCACTCCCAAGGAATCACGCCCCATTTCTCTAGCCAGGGAAACGATCGATCCTTTGTCTGGAATGTCAATTGGTGATGATGATCGGTTGGACTAA 972 45.37 MFQQQRAHNSSLMEPTNGSNGNSNNSNSASKQRLRWTNDLHEGFVNAVVQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYVPDSSSTEVHKWFTLFVVLLMQGKKADKKDSGDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSAAPVASPLSASVSGDNCPETDKNDPSTPVPTSESPRQEKASKESAQAKSISIDDSFPSHHEPLTPDSGCHGSLDDSPRPVKKPRQYRDGACAKSEMMLAHQILKSSLNSTPKESRPISLARETIDPLSGMSIGDDDRLD 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1680538 1683042 + CmoCh07G003680.1 Cmo07g00368 385676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00368 323 Pfam MYB-CC type transfactor, LHEQLE motif 132 178 IPR025756 -
Cmo07g00368 323 SUPERFAMILY Homeodomain-like 30 85 IPR009057 -
Cmo07g00368 323 MobiDBLite consensus disorder prediction 191 272 - -
Cmo07g00368 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 88 IPR017930 -
Cmo07g00368 323 Pfam Myb-like DNA-binding domain 34 84 IPR001005 -
Cmo07g00368 323 Coils Coil 135 155 - -
Cmo07g00368 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 7 320 - -
Cmo07g00368 323 MobiDBLite consensus disorder prediction 191 219 - -
Cmo07g00368 323 MobiDBLite consensus disorder prediction 1 32 - -
Cmo07g00368 323 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 31 86 IPR006447 GO:0003677
Cmo07g00368 323 MobiDBLite consensus disorder prediction 289 323 - -
Cmo07g00368 323 Gene3D - 30 89 - -
Cmo07g00368 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 320 IPR044848 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00056 Cmo-Chr6:349595 Cmo07g00368 Cmo-Chr7:1680538 4.83E-61 dispersed
Cmo07g00368 Cmo-Chr7:1680538 Cmo14g00469 Cmo-Chr14:2300274 1.84E-58 dispersed
Cmo03g00639 Cmo-Chr3:5852404 Cmo07g00368 Cmo-Chr7:1680538 5.89E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10097 PF00249 Myb_DNA-binding 2.00E-05 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00368 - - cmax:111478721 452.595