Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00376 ATGAGGATTATATGCATTCTAGTATTCATGCTTCTCTCCAGTGGGAGTTCCTCAATTGGAGATAGCAGAAATGTATCCACGAGGCCTGATGTTGTCAACATTGGGGCTTTATTCTCTTTCCATTCTATGATAGGAAAAGTTGGAAAAATCGCGGTAGAAGCTGCCATCGAGGATGTGAATTCTGATCCATCCGTTCTTGGGGGGACGAAGCTGAATCTCACTTTACATGATACCAATTACAGTGGATTTTTGGGCATCGTTGAGTCCTTGCGTTTTATGGAGACGAAGACCGTGGCCATAATTGGCCCCCAAAACTCTGTAACTGCTCATGTGATATCTCATATTGCAAAAGAGCTCCAAGTTCCTCTGTTGTCGTTTTCGGCGACCGATCCCACACTGTCATCACTTCAGTTTCCTTTCTTCATCAGAACGTCACAGAACGATCGGTATCAGATGGCTGCAGTAGCTGCAATAGTAGACTACTTTGAATGGAGAGAAGTGGTTGCCATCTTTGTTGATGATGACCATGGTAGAAATGGTATTGCTGCATTGGGGGATCAACTTAACGAGAAACGATGTAAGATCTCACTAAAAGTACCATTGAAGCCTGATGCGAGTCTAGACGAGGTCACTAATGCACTTGTTAAGGTGACTTTAACCACGTCTCGAATACTTGTTGTTCACACTTATGAGTCCACAGGTATGGTGGTGCTCAATGTAGCTCAACATCTTGGATTGACTGGACCTGGCTATGTATGGATAGCCACGAACTGGCTTTCTTTGCTACTCGACACGAATTCTACTCGTCCTCCTGGTTCTATGGAAAGTATTCAAGGACTTATTGCTTTGCGTCTTTATACTCCAAATTCTGCACTCAAAAGGAAATTTGTTTCTAGGTGGACGAATTTGACTTATGGAAAGTCGTCGAGTGGCCAATTCGGATTGAGTACGTACGGATTATATGCGTATGATACTGTATGGATGCTTGCTCATGCAATCAACTCATTTCTTAATGAAGGTGGAAATCTTTCATTTTCAAATCTTTCCAAGTTAACTTGGGCTGATGTTGGAGCTTTGAATTTGAATGCCATGAGCGTCTTCAATGGTGGGAGGGCACTACTACAGAATATTTTAGACGTAAATTTCACTGGAATAACAGGTCCAGTTGAGTTCACTCCAGACCGGGACTTGATTCGCCCTGCGTTCGAAGTGATCAATATTATCGGCTCAGGGGAAAGGCGAATTGGTTACTGGTCTAACTATTCTGGCTTATCCATTGTGCCTCCTGAAACCCTTTACTCAAAACCACCTAATGGATCCAGTTTAAATCAACAGCTATATGATGTGGTATGGCCAGGACAAGCAGCAACGAAGCCTCGTGGGTGGGCGTTTCCAAACGGTGGAGGGCATTTGAGAATCGGTGTCCCAAGACGAGTCAGTTACCAAGAATTTGTCTCACAAGTAGAAGGAACTGACATGTTCAGTGGCTACTGCATTGATGTCTTCACTGCAGCAATTAACTTGTTGCCTTATACGGTCCCTTATAAGTTAATTGCTTATGGGGATGGCGTTACTAATCCAAGAACAACCGAGCTTGTTCGTCAAATCACGACCGGGGTCTTCGATGCAGCGATAGGCGACATTGCAATTATCACGAACCGAACCCGGATGGCGGATTTTACACAACCATACATCGAGTCCGGCTTAGTAGTCATAGCCCCAGTCAAGAAGTTGAACTCTAATGCTTGGGCCTTTTTACGGCCGTTCACTGCAAAGATGTGGTGTATTACTGCTGTTTCTTTTCTTGTAGTAGGCGTAGTTGTTTGGATTTTGGAGCATAGGATTAATGATGATTTTCGTGGCCCTCCGAAGAGACAAGTTATTACTATTCTGTGGTTCAGCTTCTCAACTATGTTCTTTTCTCATCGGGAAAACACGGTCAGTACCCTCGGTCGCCTTGTGCTGCTCATATGGTTATTTGTTGTTCTTATTATAAACTCGAGCTACACTGCAAGCTTGACCTCTATCCTTACAGTTCAACAACTTTCTTCTTCTGTCAAAGGGATTGAAACTTTGGTTTCAAACAATGACCCAATTGGGTACCAGCAGGGTTCGTTTACTCGAAACTACTTGATTGAGGAACTTGGCATTCACGAATCGAGACTCGTTCCACTAATCTCAATAGAACATTATGTTAAAGCCTTGAATGATGGTCCACAGAAGAATGGTGTTGCTGCTATTGTCGACGAGCGATCGTATGCCGAGCTCTTCCTTTCAACTCATTGCGAATTCAGTATTGTTGGCCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCAGCGCGACTCTCCTTTAGCAGTCGACATGTCGACCGCTATTCTACGACTGTCCGAAAATGGGGATCTTCAAAGAATCCATGATAAATGGTTAATGAAAAGTGCTTGCACATCACAAGTCTCCAAATTTGAGGTGGATCGACTTCAGCTCGATAGCTTTTGGGGACTTTTTCTAATATGTGGATTAGTCTGCTTGCTCGCTCTAGCGATATACGTCTTTCAAATGTTGCGCCAATACAGCAAGCATTACTCAGAAGAACTTGAATCTTCTGAGCAAACCTCTCGATCTCGATCTCGGTCTAAAAGCCTACATAGATTTCTTTCTTTTGCAGATGAAAAGGAAGATGTCTTTAGGAGTCGATCCAAGCGACGACAGATGCAGGAGGCTTCAGTTAGAAACATGAATGGAGATAATTCAGCAGGCAGTTCAAGAAAATATGACAATTGTGATGCTGATGGTATGTATTGA 2808 43.38 MRIICILVFMLLSSGSSSIGDSRNVSTRPDVVNIGALFSFHSMIGKVGKIAVEAAIEDVNSDPSVLGGTKLNLTLHDTNYSGFLGIVESLRFMETKTVAIIGPQNSVTAHVISHIAKELQVPLLSFSATDPTLSSLQFPFFIRTSQNDRYQMAAVAAIVDYFEWREVVAIFVDDDHGRNGIAALGDQLNEKRCKISLKVPLKPDASLDEVTNALVKVTLTTSRILVVHTYESTGMVVLNVAQHLGLTGPGYVWIATNWLSLLLDTNSTRPPGSMESIQGLIALRLYTPNSALKRKFVSRWTNLTYGKSSSGQFGLSTYGLYAYDTVWMLAHAINSFLNEGGNLSFSNLSKLTWADVGALNLNAMSVFNGGRALLQNILDVNFTGITGPVEFTPDRDLIRPAFEVINIIGSGERRIGYWSNYSGLSIVPPETLYSKPPNGSSLNQQLYDVVWPGQAATKPRGWAFPNGGGHLRIGVPRRVSYQEFVSQVEGTDMFSGYCIDVFTAAINLLPYTVPYKLIAYGDGVTNPRTTELVRQITTGVFDAAIGDIAIITNRTRMADFTQPYIESGLVVIAPVKKLNSNAWAFLRPFTAKMWCITAVSFLVVGVVVWILEHRINDDFRGPPKRQVITILWFSFSTMFFSHRENTVSTLGRLVLLIWLFVVLIINSSYTASLTSILTVQQLSSSVKGIETLVSNNDPIGYQQGSFTRNYLIEELGIHESRLVPLISIEHYVKALNDGPQKNGVAAIVDERSYAELFLSTHCEFSIVGQEFTKNGWGFAFQRDSPLAVDMSTAILRLSENGDLQRIHDKWLMKSACTSQVSKFEVDRLQLDSFWGLFLICGLVCLLALAIYVFQMLRQYSKHYSEELESSEQTSRSRSRSKSLHRFLSFADEKEDVFRSRSKRRQMQEASVRNMNGDNSAGSSRKYDNCDADGMY 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1726781 1731592 - CmoCh07G003760.1 Cmo07g00376 385684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00376 935 PIRSF IGluLR_plant 1 932 IPR017103 -
Cmo07g00376 935 MobiDBLite consensus disorder prediction 898 935 - -
Cmo07g00376 935 Gene3D - 774 810 - -
Cmo07g00376 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Cmo07g00376 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Cmo07g00376 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 322 334 - -
Cmo07g00376 935 CDD GluR_Plant 471 811 - -
Cmo07g00376 935 Pfam Bacterial extracellular solute-binding proteins, family 3 526 811 IPR001638 -
Cmo07g00376 935 SUPERFAMILY Periplasmic binding protein-like I 28 462 IPR028082 -
Cmo07g00376 935 SMART GluR_14 472 813 IPR001320 GO:0015276|GO:0016020
Cmo07g00376 935 Pfam Ligand-gated ion channel 812 842 IPR001320 GO:0015276|GO:0016020
Cmo07g00376 935 Gene3D - 50 399 - -
Cmo07g00376 935 PANTHER GLUTAMATE RECEPTOR 3.6 13 925 - -
Cmo07g00376 935 MobiDBLite consensus disorder prediction 908 925 - -
Cmo07g00376 935 Gene3D - 470 581 - -
Cmo07g00376 935 SUPERFAMILY Periplasmic binding protein-like II 449 814 - -
Cmo07g00376 935 CDD PBP1_GABAb_receptor_plant 33 428 IPR044440 -
Cmo07g00376 935 Gene3D - 147 424 - -
Cmo07g00376 935 Gene3D - 582 705 - -
Cmo07g00376 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 925 - -
Cmo07g00376 935 Gene3D - 745 773 - -
Cmo07g00376 935 Pfam Receptor family ligand binding region 50 409 IPR001828 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00376 Cmo-Chr7:1726781 Cmo20g00619 Cmo-Chr20:3031474 0 dispersed
Cmo19g00823 Cmo-Chr19:8110181 Cmo07g00376 Cmo-Chr7:1726781 0 dispersed
Cmo01g02083 Cmo-Chr1:14490476 Cmo07g00376 Cmo-Chr7:1726781 0 wgd
Cmo03g00649 Cmo-Chr3:5886528 Cmo07g00376 Cmo-Chr7:1726781 0 wgd
Cmo07g00376 Cmo-Chr7:1726781 Cmo09g00038 Cmo-Chr9:167186 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00376 K05387 - csv:101213408 1554.65