Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00380 ATGGCGTTTTCCGACGAGAACAATCCCAACTTGATGATCAAACCCACTGCGTTTCTTCCAGGAGGAGGGTTGGAGAACAGAGGGAGGGCTTTTGGGCAGGAGATTAGTAGAACTAATAATCGAAGAGCTCTTAATGATATCAATCAGAATTATCAAGCTTACCCTTGTGTTGTTAACAAGAGAGCTCTCTCAGGGAAGCAAGAAATCTATGAGAAAAAGCAGGTTGATCCATTTCATAGACCGATTACGAGGAAGTTTGCAGCTCAGATTGCTAGTAGTCAACAGCTTCATCAGCCACAAGGAACTAATAAGCCTAACTCATTTCTTTCAAACTCAAATGCGTTTGGACATTCCATATTTGTAGACGAGGATTGCAAAACACTAGAAAATGATCATCCAGTTCCCATGTTCTTGGAGAAACCAGAACCATCATCATTGTCTCAGGAAGCAACCCAAATGGCGGAGGTTGAAATGGAGGATATCACAGATGAACACGATGACCCGGTAATCGATATCGATGGTGTCGATTCCACAAACCCGCTTGCCGTTGTCGATTATGTCGATGATCTCTACGCACACTACAGAAAACTAGAGAATTCGAGCTGTGTTTCCCCGAATTACATGACGAAACAATTCGACATTAATGAGAAAATGAGAGCTATACTGATCGACTGGCTTATTGAAGTGCACGACAAGTTTGATCTCATTGGAGAAACATTGTTTCTCACTGTGAATCTGATAGACAGGTTCTTGTCGCAAAAAACAGTTGTGAGGAAGAAACTTCAGCTGGTTGGTTTGGTTTCTATGCTCTTAGCTTGCAAATATGAAGAAGTTTCTGTCCCTGTTGTCGGAGATTTGATTCTTATTTCTGATAAAGCTTACTCCAGAAAAGAAGTTCTTGAAATGGAGACAGTGATGCTCAACTGTCTGCAATTCAATATGTCGGTTCCGACACCCTTCGTGTTCCTCCGAAGGTTCCTTAAAGCAGCTCAATCTAACAAAAAGCTTGAGCTATTGGCATTCTTCTTGATCGAGCTCTCGCTGGTGGAGTATGAAATGCTGCGATTCCCCCCCTCTCTGCTGGCGGCGGCCGCGACTTACACAGCTCAATGTACTCTCACCGGAGTCCAGGGGTGGAGCCGGACATGCCAGTGGCATTCTAGCTACTCAGAAGATCAGCTACTAGAATGCTCGAGACTGATGGTGGGGTTCCATCAGAGAGCAGCGACGGGGAAGCTCACCGGGGTTCATCGGAAGTACTGTACATCGAAATTTAACTACACGGCAAAATGTGAACCTGCACATTTTCTTTTGCAGACTCAGCAATAG 1329 44.39 MAFSDENNPNLMIKPTAFLPGGGLENRGRAFGQEISRTNNRRALNDINQNYQAYPCVVNKRALSGKQEIYEKKQVDPFHRPITRKFAAQIASSQQLHQPQGTNKPNSFLSNSNAFGHSIFVDEDCKTLENDHPVPMFLEKPEPSSLSQEATQMAEVEMEDITDEHDDPVIDIDGVDSTNPLAVVDYVDDLYAHYRKLENSSCVSPNYMTKQFDINEKMRAILIDWLIEVHDKFDLIGETLFLTVNLIDRFLSQKTVVRKKLQLVGLVSMLLACKYEEVSVPVVGDLILISDKAYSRKEVLEMETVMLNCLQFNMSVPTPFVFLRRFLKAAQSNKKLELLAFFLIELSLVEYEMLRFPPSLLAAAATYTAQCTLTGVQGWSRTCQWHSSYSEDQLLECSRLMVGFHQRAATGKLTGVHRKYCTSKFNYTAKCEPAHFLLQTQQ 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1754220 1756691 + CmoCh07G003800.1 Cmo07g00380 385688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00380 442 PANTHER CYCLIN-B2-1 29 437 - -
Cmo07g00380 442 SUPERFAMILY Cyclin-like 316 434 IPR036915 -
Cmo07g00380 442 Pfam Cyclin, N-terminal domain 189 315 IPR006671 -
Cmo07g00380 442 SMART Cyclin_C_2 317 434 IPR004367 -
Cmo07g00380 442 Gene3D - 203 315 - -
Cmo07g00380 442 Gene3D - 189 429 - -
Cmo07g00380 442 SMART cyclin_7 224 308 IPR013763 -
Cmo07g00380 442 SMART cyclin_7 321 403 IPR013763 -
Cmo07g00380 442 CDD CYCLIN 315 360 IPR013763 -
Cmo07g00380 442 PANTHER CYCLINS 29 437 IPR039361 -
Cmo07g00380 442 SUPERFAMILY Cyclin-like 178 314 IPR036915 -
Cmo07g00380 442 ProSitePatterns Cyclins signature. 219 250 IPR006671 -
Cmo07g00380 442 Pfam Cyclin, C-terminal domain 317 432 IPR004367 -
Cmo07g00380 442 CDD CYCLIN 218 307 IPR013763 -
Cmo07g00380 442 PIRSF Cyclin_A_B_D_E 23 442 IPR039361 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00380 Cmo-Chr7:1754220 Cmo07g01148 Cmo-Chr7:6157067 1.04E-84 dispersed
Cmo01g02069 Cmo-Chr1:14424211 Cmo07g00380 Cmo-Chr7:1754220 1.54E-168 wgd
Cmo03g00655 Cmo-Chr3:5920759 Cmo07g00380 Cmo-Chr7:1754220 0 wgd
Cmo07g00380 Cmo-Chr7:1754220 Cmo09g00056 Cmo-Chr9:258209 2.85E-38 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00380 K21777 - csv:101216622 768.844