Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00397 ATGCCGCTTGATTTTGTTTTCATGGCGGAGAGTTCAGAAGAGGTCTATCTCCATGGCGATCTCGACCTCAAAATCTTCCAGGCCGTCCAGTTGCCTAATATGGATATTATATCGGAGCGTCTTCGTCGGTGCTTCACCGCTTGTGGTACTCTCGACTACTCTGCCATTAAATCCGTCGGAACCAACTCCCGTTCCGTCGACGAGGGGAAAGTCCACCGTGGCCATAGCAAAATCATCACCAGTGATCCATATGTTACCGTCCGGGTTCCTCAAGCCACCGTCGCACGGACTCGCGTGATAAAGAATTCCCAGGATCCCCAATGGAACGAGCATTTTGTTATCCCTCTTGCACAGAAAATGGCTGAAATAGAATTCCAGGTGAAAGATGACGATGTCTTTGGCGCTGAGGTTATGGGGACGGTCAAGTTCCCAGCTCGGCAAATTGCCTCTGGTCTGACCATTAGTGGGTGGTTTCCGGTGATTGGCTCCAATGGCAAGCCGCCAAAGCCTGACACGAAACTCCAAATCGAAATGAAGTTTACCTCGGTTGAGAAGAACCCGGCGTATCGTCATGGTATCGCCGGAGATCCAGAGCATAAGGGTGTGCGGCATACATATTTTCCTGTCAGGAAAGGGAGCTCCATGAGATTGTACCAAGATGCTCATGTGCCTGATGGGCTGCTGCCACAGATTGAATTGGATGGTGGGAAGGTTTTTAGACAAGGGAAATGTTGGGAGGATATTTGCCATGCTATAACAGAGGCTCATCATATGATTTATATTGTCGGATGGTCTGTTTTTCATAAGGTGAGGCTGGTTAGAGAGCCGAGCAGGCCACTGCCCCGAGGCGGGGATTTGACTCTTGGTGAGCTGCTCAAATACAAATCAGAAGAGGGTGTTCGAGTTTTGTTGATGATTTGGGATGATAAGACTTCTCATGATAAGTTCTTCATCAGCACGGAAGGATTGATGCAGACGCATGACGAGGAAACCTACAAATTTTTCAAGCATTCTTCTGTTATCTGTGTGCTTTCGCCTCGCTATCCGAGTGGCAAGCTAAGCTATGTGAAACAAAAGGTTGTAGGGACTGTCTTCACACACCATCAAAAGTGTGTCCTTGTTGATACACAGGGATATGGTAATAATAGAAAGATAACTGCATTTCTTGGAGGTCTTGATCTCTGTGATGGTCGTTACGATACACCCGAGCATCGATTGTTTCGTGACCTCGACACAGTATTTAAGGAAGATTTTCACAATCCTGCAATTCCTCCTGGAACCAATGGTCCAAGGGAACCATGGCATGACTTGCACTGTCGGATCGATGGGCCAGCTGCATATGACTTGCTTATGAACTTTGAGCAACGTTGGAACAAAGCCACAAGATGGACAGAGTTTGGCCTACGGTGCAGGAGAATTACTCACTGGCATGACGCTTTAATAAAGATAGAGCGCATATCATGGATACTAAGCCCTAAACTAAATACGTTACCGGATGGTTCAACAAAAGTTCCAGACGATGAACCTAATGTATATGTTTCGAAGGAAGAAGATCCCGAAAACTGGCATGTTCAGATTTTCCGATCCATCGACTCTGGATCAGTCAAAGGGTTTCCAAAAGATGCTCATCTTGCCGTGTTGCAGAATCTTGTATGTGCAAAAAACTTGGCTATAGAGAAAAGCATCGAAATGGCATATATCCAGGCTATCAGATCGGCGCAACATTTCATTTATATCGAAAATCAGTATTTTATCGGATCGTCGTATGGATGGCCAGGATATAAAAATGCTGGGGCTGATCATCTCATTCCCATGGAGTTGGCCCTTAAAATTGCGAGCAAAATTAGAGCCAAGGAAAGATTTGTTGTATATATTGTTATACCAATGTGGCCCGAGGGAGATCCGAATAGCGGTGCCATGCAAGAGATTCTTTATTGGCAGGGACAAACAATGCAAATGATGTATGACATTGTTGCAAGTGAACTAAAGTCATCAGAGCAACCAGATTTGCACCCTCAAGACTATCTAAATTTCTACTGTCTTGGTAAACGCGAAGAAATTCCTGCAAATGGACCGAACATCGACAATGCAACGGCGTGTAATTCACTAAAACATAAACGGTTTATGATTTACGTTCACGCCAAGGGAATGATAGTAGATGATGAATATGTAATCATTGGGTCTGCTAATATCAACCAAAGATCTATGGCTGGGACAAAGGATACCGAGATAGCCACCGGCGCCTATCAGCCGCATCACACGTGGGCAAAGAAGCAGAAACACCCACATGGTCAGATTTACGGGTATAGAATGTCGTTATGGAGCGAGCATCTCGGTATGCTCGATCCCATTTTTGAGGAGCCAAAAACTTTGGAATGTGTACGAAGAGTGAACAAGATTGCTGAGGATAACTGGAAGATATTTACAGCGGATGAATTCGCGACATTGCAAGGCCACCTTCTCAGGTATCCGTTGCTCGTCGACCGTGACGGGAAAGTCAGCTCTCTGCCTGGATGTGAAAACTTCCCTGATGTTGGGGGGAAGATAATAGGGTCTCATTCAACTGCAATTCCTGATGTTCTGACCACTTAG 2592 45.64 MPLDFVFMAESSEEVYLHGDLDLKIFQAVQLPNMDIISERLRRCFTACGTLDYSAIKSVGTNSRSVDEGKVHRGHSKIITSDPYVTVRVPQATVARTRVIKNSQDPQWNEHFVIPLAQKMAEIEFQVKDDDVFGAEVMGTVKFPARQIASGLTISGWFPVIGSNGKPPKPDTKLQIEMKFTSVEKNPAYRHGIAGDPEHKGVRHTYFPVRKGSSMRLYQDAHVPDGLLPQIELDGGKVFRQGKCWEDICHAITEAHHMIYIVGWSVFHKVRLVREPSRPLPRGGDLTLGELLKYKSEEGVRVLLMIWDDKTSHDKFFISTEGLMQTHDEETYKFFKHSSVICVLSPRYPSGKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPEHRLFRDLDTVFKEDFHNPAIPPGTNGPREPWHDLHCRIDGPAAYDLLMNFEQRWNKATRWTEFGLRCRRITHWHDALIKIERISWILSPKLNTLPDGSTKVPDDEPNVYVSKEEDPENWHVQIFRSIDSGSVKGFPKDAHLAVLQNLVCAKNLAIEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADHLIPMELALKIASKIRAKERFVVYIVIPMWPEGDPNSGAMQEILYWQGQTMQMMYDIVASELKSSEQPDLHPQDYLNFYCLGKREEIPANGPNIDNATACNSLKHKRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWAKKQKHPHGQIYGYRMSLWSEHLGMLDPIFEEPKTLECVRRVNKIAEDNWKIFTADEFATLQGHLLRYPLLVDRDGKVSSLPGCENFPDVGGKIIGSHSTAIPDVLTT 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1805774 1811719 - CmoCh07G003970.1 Cmo07g00397 385705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00397 863 Gene3D C2 domain 18 191 IPR035892 -
Cmo07g00397 863 Pfam C2 domain 19 160 IPR000008 -
Cmo07g00397 863 SMART pld_4 363 398 IPR001736 GO:0003824
Cmo07g00397 863 SMART pld_4 708 735 IPR001736 GO:0003824
Cmo07g00397 863 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 708 735 IPR001736 GO:0003824
Cmo07g00397 863 Gene3D Endonuclease Chain A 535 760 - -
Cmo07g00397 863 PANTHER PHOSPHOLIPASE D 12 863 IPR015679 -
Cmo07g00397 863 PANTHER PHOSPHOLIPASE D DELTA 12 863 - -
Cmo07g00397 863 PIRSF PLD_plant 7 863 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cmo07g00397 863 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 363 398 IPR001736 GO:0003824
Cmo07g00397 863 Gene3D Endonuclease Chain A 236 472 - -
Cmo07g00397 863 SMART C2_3c 20 157 IPR000008 -
Cmo07g00397 863 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 17 182 IPR035892 -
Cmo07g00397 863 Pfam Phospholipase D C terminal 784 852 IPR024632 -
Cmo07g00397 863 Pfam Phospholipase D Active site motif 709 735 IPR001736 GO:0003824
Cmo07g00397 863 Pfam Phospholipase D Active site motif 363 398 IPR001736 GO:0003824
Cmo07g00397 863 SUPERFAMILY Phospholipase D/nuclease 208 467 - -
Cmo07g00397 863 CDD C2_plant_PLD 15 181 - -
Cmo07g00397 863 ProSiteProfiles C2 domain profile. 47 158 IPR000008 -
Cmo07g00397 863 SUPERFAMILY Phospholipase D/nuclease 559 788 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00397 Cmo-Chr7:1805774 Cmo08g00909 Cmo-Chr8:5910019 0 dispersed
Cmo03g00677 Cmo-Chr3:5991150 Cmo07g00397 Cmo-Chr7:1805774 0 wgd
Cmo05g00331 Cmo-Chr5:1463539 Cmo07g00397 Cmo-Chr7:1805774 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00397 K01115 - csv:101217251 1583.54