Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00399 ATGTTATCCAGCTTGATGAACCTTCTGAGGGCTTGCTGGTTGCCATCCTCGGACAATATCGTACACAGCAATTCGGATTCGGCAGGCCGTCGTGAAGGCCTACTATGGTACAAAGATCTTGGACATCACATGAATGGTGAATTTTCAATGGCTGTTGTCCAGGCTAATAACTTGCTTGAGGATCAGAGCCAGATTGAATCGGGTCCATTGAGCTTGCTCGAATCCGGGCCGTTTGGAACATTTATTGGTGTCTATGATGGTCATGGTGGACCTGAAGCATCAAATTACATATATGACAATCTTTTCCAGCATTTGAAAAGGTTCACCACAGAACAACAATCGATGTCATCTGATGTGATAAAGAAAGCATTTCAAGCTACAGAGGAAGGGTTTATTTCGTTAGTGGCTAAACAATGGCAGATGAATCCCCAAATTGCAGCTGTTGGTTCATGCTGTTTGGTTGGTGTGATCTGTGGTGGCACCCTTTACACAGCCAATCTTGGCGATTCCCGTGCTGTGCTGGGAAGGCTCGTTCAGGCGACCGAGGAGGTCGTTGCTGTTCAGCTATCAGCCGAGCATAATGTGAGCATAGAAGCTGTCAGAAGGGAGATGCAGTCTTTGCACCCAGATGACTCGCATATAGTAGTTTTGAAGCATAATGTATGGCGAGTAAAAGGCTTAATGCAGGTTTCCAGATCTATAGGCGACGCGTATCTAAAGAAGGCTGAATTCAACAGGGAGCCCTTGTATGCGAAGTTTAGGCTTCGCGAACCGTTCAATCGGCCAATATTGAGCTGTGAACCATCAATATCAATGCATGAACTTCGACCACAAGATCAATTCATCATATTTGCCTCTGATGGTCTGTGGGAGCACCTTAGCAATCAGCAGGCTGTGGATATTATTCGAACTCACCCACATCATGGAAGTGCTAAGAGATTGGTAAAAGCTGCTATGCAGGATGCAGCTAAGAAGCGAGAAATGCGATATTCAGATTTGAAGGACATCGACCGAGCGATTCAAAACCCTTTCAGTAGCATTTTGAAGACTCTTGAGAATCCTGAAGGGGGTGTGTTTGGGAAGTACTATAGCTTGCCTGCTCTGAACGATCCTAGAATCGAGAGGCTTCCATATTCGATTCGGATACTTCTCGAATCGGCCATTCGAAACTGCGATGAGTTTGCCGTTAAGGCGAACGATGTCGAGAAGATTATTGACTGGGAGAACACCGCTCCCAAACTGGTTGAAATTCCATTCAAACCTGCTAGAGTGTTGCTTCAGGATTTTACTGGTGTGCCTGCTGTTGTTGATCTTGCTTGCATGCGAGATGCGATGAACAGGCTCGGTGGTGATTCGAACAAGATTAATCCATTGGTTCCAGTAGATCTTGTCATTGACCACTCGGTTCAGGTTGACGTAGCGAAAACAGAAAATGCAGTAAAAGCAAACATGGAACTCGAGTTTCAACGAAACAGAGAAAGGTTCGGTTTTCTGAAATGGGGATCGAGTGCGTTCCATAACATGCTTGTCGTACCACCAGGATCTGGTATAGTTCACCAGGTTAATCTGGAGTACCTTGGCCGAGTAGTGTTCAACACAAATGGCGTTCTTTATCCTGATAGTGTCGTGGGAACTGATTCACACACGACGATGATCGATGGATTGGGTGTTGCTGGTTGGGGTGTCGGTGGGATAGAAGCAGAAGCTGCAATGCTTGGACAGCCCATGAGCATGGTCTTGCCCGGCGTCGTTGGTTTTAAATTAGTTGGAAAGCTGAGAAATGGTGTAACAGCTACGGACTTGGTTTTGACTGTAACTCAAATGCTCAGGAACCATGGTGTTGTTGGCAAGTTTGTGGAGTTTTATGGGGAAGGTATGAGTGAACTATCTTTGGCCGACCGTGCCACAATTGCCAACATGTCTCCCGAGTACGGTGCAACAATGGGGTTCTTTCCTGTGGACCATGTCACCTTGCAGTATCTAAAACTGACCGGAAGAAAAGATGAAACGATTTCTATGATAGAATCGTATCTGCGAGCTAACAAGATGTTCGTGGACTACAGCGAGCCTCAAGTTGAACGAGTGTACTCCTCTCATATCGAACTGAACCTTTCGGACGTTGAACCGTGCATATCAGCCCAGCTTCGGCACGGGGATGTCGTAATTGCAGCTATCACCAGCTGCACGAATACCTCGAACCCAAGTGTTATGCTTGGAGCTGCATTGGTGGCTAAGAAAGCTTGTGAGCTTGGGCTAGAGGTTAAGCCCTGGATTAAAACTAGTCTTGCTCCCGGCTCGGGGGTCGTGACCAAATATTTGGCACAGAGTGGCTTGCAAAAGTATCTTAATCAGCTAGGATTCAATATAGTTGGGTATGGATGTACCACATGTATTGGAAATTCAGGAGATATTGATGAATCCGTTGCTTCGGCGATAACCGAAAATGATGTAGTTGCTGCAGCCGTACTGTCGGGAAATAGAAATTTCGAGGGTCGTGTGCACCCGTTAACGAGGGCCAACTACCTTGCTTCTCCTCCTCTTGTGGTTGCCTATGCTCTTGCTGGCAGTTCGAGTTTTTGCGTAGTTGTAGTTGTAACTTATTTACCGCTCCACCAGGTCGTACAGTCGAACGTGCTGCCTGACATGTTTCGGGCCACATACCAAGCGATCACAGAAGGAAATGTAACCTGGAACCAGTTATCGGTTCCAGAAGGAACACTATACTCCTGGGACTCGGCCTCGACATACATCCATGAGCCTCCTTATTTCAAGGATATGAGCATGTCGCCTCCGGGGCCTCACGGAGTTAAGAACGCGTTCTGCTTGCTCAATTTTGGTGATAGTATTACTACTGATCATATCTCACCTGCTGGTAGCATCCATAAAGACAGTCCTGCTGCTAAGTACCTTCTCGAACGTGGGGTCGATAGACGAGATTTCAACTCTTATGGCAGTCGCCGTGGGAATGACGAGATTATGGCACGTGGCACTTTCGCCAACATTCGTATAGTCAATAAACTGTTGAAGGGGGAAGTTGGACCCAAGACCATCCACATCCCCAGTGGGGAGAAACTTTCTGTTTTCGATGCTGCAATGAGGTACAAGAGCGAGGGGCACGATACGATCATTCTGGCTGGTGCCGAGTACGGTAGCGGAAGCTCACGAGATTGGGCTGCCAAGGGGCCAATGCTTCTGGGTGTAAAAGCAGTTATAGCAAAGAGCTTTGAGCGTATACACCGCAGCAACTTGGTCGGTATGGGCGTTATTCCTCTATGTTTCAAGGCAGGGGAAGATGCCGAGTCTCTCGGGCTGACCGGGCACGAGCGTTACACCATCGATCTTCCAAGCAACGTGAGTGAAATCAGACCTGGTCAGAACGTGACGGTGGTGACAGACACTGGAAAGTCATTCGGTTGCGTTCTAAGATTCGACACAGAGGTGGAACTGGCATATTTCGATCACGGTGGAATTCTGCAGTATGTTATTAGGAATTTGATCCACGCGAAGCAGTAA 3513 47.34 MLSSLMNLLRACWLPSSDNIVHSNSDSAGRREGLLWYKDLGHHMNGEFSMAVVQANNLLEDQSQIESGPLSLLESGPFGTFIGVYDGHGGPEASNYIYDNLFQHLKRFTTEQQSMSSDVIKKAFQATEEGFISLVAKQWQMNPQIAAVGSCCLVGVICGGTLYTANLGDSRAVLGRLVQATEEVVAVQLSAEHNVSIEAVRREMQSLHPDDSHIVVLKHNVWRVKGLMQVSRSIGDAYLKKAEFNREPLYAKFRLREPFNRPILSCEPSISMHELRPQDQFIIFASDGLWEHLSNQQAVDIIRTHPHHGSAKRLVKAAMQDAAKKREMRYSDLKDIDRAIQNPFSSILKTLENPEGGVFGKYYSLPALNDPRIERLPYSIRILLESAIRNCDEFAVKANDVEKIIDWENTAPKLVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNRLGGDSNKINPLVPVDLVIDHSVQVDVAKTENAVKANMELEFQRNRERFGFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGVLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLVGKLRNGVTATDLVLTVTQMLRNHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRKDETISMIESYLRANKMFVDYSEPQVERVYSSHIELNLSDVEPCISAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLAQSGLQKYLNQLGFNIVGYGCTTCIGNSGDIDESVASAITENDVVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSSSFCVVVVVTYLPLHQVVQSNVLPDMFRATYQAITEGNVTWNQLSVPEGTLYSWDSASTYIHEPPYFKDMSMSPPGPHGVKNAFCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRRDFNSYGSRRGNDEIMARGTFANIRIVNKLLKGEVGPKTIHIPSGEKLSVFDAAMRYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGVIPLCFKAGEDAESLGLTGHERYTIDLPSNVSEIRPGQNVTVVTDTGKSFGCVLRFDTEVELAYFDHGGILQYVIRNLIHAKQ 1170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1819193 1828669 - CmoCh07G003990.1 Cmo07g00399 385707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00399 1170 PANTHER ACONITATE HYDRATASE 1 339 713 - -
Cmo07g00399 1170 PANTHER ACONITATE HYDRATASE 1 712 1167 - -
Cmo07g00399 1170 CDD AcnA_IRP 423 856 - -
Cmo07g00399 1170 Pfam Protein phosphatase 2C 81 325 IPR001932 -
Cmo07g00399 1170 CDD PP2Cc 48 320 IPR001932 -
Cmo07g00399 1170 SMART PP2C_4 41 341 IPR001932 -
Cmo07g00399 1170 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 339 713 IPR006249 -
Cmo07g00399 1170 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 712 1167 IPR006249 -
Cmo07g00399 1170 ProSiteProfiles PPM-type phosphatase domain profile. 47 344 IPR001932 -
Cmo07g00399 1170 Gene3D - 38 342 IPR036457 -
Cmo07g00399 1170 Gene3D Aconitase, domain 4 932 1167 IPR015928 -
Cmo07g00399 1170 SUPERFAMILY LeuD/IlvD-like 907 1165 - -
Cmo07g00399 1170 Pfam Aconitase family (aconitate hydratase) 402 714 IPR001030 -
Cmo07g00399 1170 Pfam Aconitase family (aconitate hydratase) 714 855 IPR001030 -
Cmo07g00399 1170 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Cmo07g00399 1170 PRINTS Aconitase family signature 724 735 IPR001030 -
Cmo07g00399 1170 PRINTS Aconitase family signature 786 799 IPR001030 -
Cmo07g00399 1170 PRINTS Aconitase family signature 508 516 IPR001030 -
Cmo07g00399 1170 PRINTS Aconitase family signature 627 640 IPR001030 -
Cmo07g00399 1170 PRINTS Aconitase family signature 484 497 IPR001030 -
Cmo07g00399 1170 PRINTS Aconitase family signature 537 550 IPR001030 -
Cmo07g00399 1170 PRINTS Aconitase family signature 551 566 IPR001030 -
Cmo07g00399 1170 PRINTS Aconitase family signature 613 626 IPR001030 -
Cmo07g00399 1170 SUPERFAMILY PP2C-like 56 320 IPR036457 -
Cmo07g00399 1170 SUPERFAMILY Aconitase iron-sulfur domain 353 903 IPR036008 -
Cmo07g00399 1170 CDD AcnA_IRP_Swivel 944 1114 IPR044137 -
Cmo07g00399 1170 ProSitePatterns Aconitase family signature 1. 720 736 IPR018136 -
Cmo07g00399 1170 Gene3D Aconitase, domain 3 708 858 IPR015931 -
Cmo07g00399 1170 ProSitePatterns Aconitase family signature 2. 786 799 IPR018136 -
Cmo07g00399 1170 Pfam Aconitase C-terminal domain 967 1095 IPR000573 -
Cmo07g00399 1170 Gene3D - 870 928 - -
Cmo07g00399 1170 Gene3D Aconitase, domain 3 343 707 IPR015931 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00683 Cmo-Chr3:6014543 Cmo07g00399 Cmo-Chr7:1819193 0 dispersed
Cmo07g00399 Cmo-Chr7:1819193 Cmo19g00947 Cmo-Chr19:8674013 0 dispersed
Cmo19g00763 Cmo-Chr19:7736007 Cmo07g00399 Cmo-Chr7:1819193 0 dispersed
Cmo07g00876 Cmo-Chr7:4133599 Cmo07g00399 Cmo-Chr7:1819193 1.73E-15 transposed
Cmo03g00680 Cmo-Chr3:6004512 Cmo07g00399 Cmo-Chr7:1819193 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00399 K01681 - csv:101217715 1528.84