Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00420 ATGGCTTCCTTTTCCATTAAACCTCTCTTCTTTTCATTCCCTTTCTTCTTCCTTTTCCTTTCCTTTACTCACTCTGCAACCATCACTCTCCAAAACAACTGCACTCACACAATCTGGCCCGGCATTTTATCCGGCGCCGGAACCGCCCCTCTCTCCACCACCGGTTTCCCCCTCCTCCCCGGCGCTACTTCTCTCCTCTCTCTCCCCACCGCCTGGTCCGGCCGCATTTGGGCCCGCACTTTCTGCTCCACCGATTCCTCCGGCCGCTTCTCCTGCGCCACTGCCGACTGCGGCTCTGGCCTTGTCGAATGCAACGGCGCCTGCGCCGCCCCACCCGCCACTCTCGCTGAATTCACCCTCAACGGCGGTGGTGGCTTCGATTTCTACGACGTCAGCCTCGTCGACGGCTACAACATTGCGATGCAAATCGTACCGGAGGGTGGAAAGTCAGGAAACTGTACGGCCACCGGTTGTATTGCGGATTTAAACGGGGATTGCCCAGAGGAGCTGCAGGTAGTGATGGGCGGCGGAGAGGATGGTCGGAACCGGAGCGTGGCGTGCAAAAGCGCGTGTGTAGCGTTCGGGAAAGCGGAATATTGCTGCAGTGGGGCGTTTGCAAATCCTAACACGTGTAAACCGAGTAATTACTCGAAATTCTTTAAGAACAATTGCCCATTGGCTTACAGTTACGCCTTCGACGACGGAACCAGCACCTTCACCTGTATGTCGGCCAATTATGTCGTCACTTTTTGCCCCTCGCCGTTGGCCAGTTTCAAGGCTTCTAGCAAACCACAACCGCAAGCGGCGGACGTTTCAGGCAGCCGACGTCGTGCTGCACAGCCGTGTTTAGCTATTCTCACCGCAGTTTGGGTGGCCGTTTGGCGGCTGCGGCATCGGAATAATCTCTAA 909 56.44 MASFSIKPLFFSFPFFFLFLSFTHSATITLQNNCTHTIWPGILSGAGTAPLSTTGFPLLPGATSLLSLPTAWSGRIWARTFCSTDSSGRFSCATADCGSGLVECNGACAAPPATLAEFTLNGGGGFDFYDVSLVDGYNIAMQIVPEGGKSGNCTATGCIADLNGDCPEELQVVMGGGEDGRNRSVACKSACVAFGKAEYCCSGAFANPNTCKPSNYSKFFKNNCPLAYSYAFDDGTSTFTCMSANYVVTFCPSPLASFKASSKPQPQAADVSGSRRRAAQPCLAILTAVWVAVWRLRHRNNL 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1903420 1904713 - CmoCh07G004200.1 Cmo07g00420 385728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00420 302 SUPERFAMILY Osmotin, thaumatin-like protein 26 253 IPR037176 -
Cmo07g00420 302 ProSiteProfiles Thaumatin family profile. 25 252 IPR001938 -
Cmo07g00420 302 CDD TLP-PA 27 251 - -
Cmo07g00420 302 PANTHER OS03G0233200 PROTEIN 21 265 IPR001938 -
Cmo07g00420 302 PIRSF PR5 1 293 IPR001938 -
Cmo07g00420 302 ProSitePatterns Thaumatin family signature. 88 104 IPR017949 -
Cmo07g00420 302 PANTHER - 21 265 - -
Cmo07g00420 302 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Cmo07g00420 302 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Cmo07g00420 302 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Cmo07g00420 302 PRINTS Pathogenesis-related protein signature 242 251 IPR001938 -
Cmo07g00420 302 SMART tha2 28 252 IPR001938 -
Cmo07g00420 302 Pfam Thaumatin family 32 252 IPR001938 -
Cmo07g00420 302 Gene3D Thaumatin 26 252 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00420 - - - cmax:111497364 582.408
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00705 Cmo07g00420 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00420 Cmo-Chr7:1903420 Cmo20g00761 Cmo-Chr20:3822026 4.75E-100 dispersed
Cmo07g00420 Cmo-Chr7:1903420 Cmo12g00355 Cmo-Chr12:2200133 1.58E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1121 Blo04g00882 Blo16g00082 . . . . . . . . Cma03g00680 Cma07g00423 . . . . Cpe10g00668 Bhi03g00861 Tan03g2089 Cmetu04g0243 . . . . . . . . . . . . . . Cone9ag1608 Lsi01g00595 . . Cme08g00937 Blo05g00709 . . . . . Bma03g00958 Bma06g00093 Sed05g3598 Cmo03g00705 Cmo07g00420 Cma16g01240 Cma20g00764 . . . . Bhi10g01870 Tan05g1162 Cmetu11g0544 . . . . . . . . . . . Lsi07g01100 Csa06g03333 Chy02g00567 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000237 1 5 5 5 5 4 5 5 5 8 4 5 7 6 6 6 5 6 5 5 5 6 4 5 5 5 5 11 8 3 160
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00420 Cmo_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0