Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00423 ATGGACCCCAAGAGGGCAAAATCCTCGCCGGGAAAACGTTGCAACTACGACGCCGACCGACGTTTCCGGACAAATTCTCCATTTCTGTTCAGGCTGAGGGAGACGTATGGTTCACTCCTTAAGTTGCTCGATTCCTTCGATGCCGACATTATCTGCTTTCAGGAAACGAAATTAAGGAGGCAGGAATTGCGAGCGGATTTAATCATTGCTGATGGTTATGAATCATTCGTTTCATGCACTCGTACCTCTGAGAAAGGTCGAACCGGCTACTCAGGGGTTGCTACGTTTTGCCGAGTTAAGTCAGCATTTTCAAGTAATGAAGTAGCCTTGCCAGTTCGGGCGGAGGAAGGCTTCACTGGACTTTTAGAAAGTTCGCACAAAGGAGAAGGCACAATGCCTGCAGTTGCAGAAGGGCTTGAGGAATTTTCGAAAGAGGAGCTCCTCAAAGTTGACAGAGAGGGGCGTTGTATTGTCACAGATCATGGTCATTTTGTTCTCTTCAATATTTATGGACCTCGAGCTCAAAGTGATGATACAGAAAGGGTTCTATTTAAGTCAAACTTTTACAATATACTACAGAAAAGATGGGAGCACCTTCTGCGTCAAGGAAAAAGGATATTTGTTGTTGGTGATCTCAATATTGCACCCACCTCTATGGATCATTGTGATGCAGGACCAGATTTTGAGAATAATGAGTTTCGGAGATGGCTGAGATCTTTACTGGTGGGATGTGGTGGTCATTTCACTGACATTTTCAGAGCGAAACATCCCGATCGAAACGATGCATATACATGCTGGCCTCAAAGTACAGGTGCCGAAGTATTCAATTATGGGACAAGGATTGACCATATTTTGTGTGCTGGACCATGCTTACATCCGGACAGCAACTTGCCAAGCCATGATATTGTGAATTGCCATGTTCTGGAATGTGACATACTGTCACAGTATAAACGCTGGAAAGATGGAAATTCATTTAGGTGGAAAGGAGAGCAGACCGTTAAACTAGAAGGTTCTGATCATGCACCCGTTTATGCAAGTCTACTGGAAATCCCTGATACCCCCCAACATAGTGCTCCATCTTTATCTGCAAGATACAATCCCAAGATTCACGGGCTTCAGCAAACGCTTGTATCTATGCTACTGAAAAAACAAGCTGCTGAAGGTTCAGCAACATGCAAGATATCAAATTCATTTTCGAGTGGGAACGACGTCTTAGGGAATTGTTCCCAGGGGCTCAATGGATCATTTGATAATGGTGATTTATCAGGCCTTCTTCCTGGTGAATCATGTTCCTCGACAAACATAGAAACTGAAGATTCTCTATTAAAAACAGAAGAGAGTTCCGGTGGAGGCTATTCTGAGGAAGCTCCATGCAACACCTTAATTACGCACGAGTCTCTACATACAAAAACATTACCTGAGAATGAAACTAGGAAAAGAGTAAGAAGGAGTTCCCAGATGTCATTAAAGTCGTTCTTCCAGACGAACTCGGTTATTAGCAACGTTGCTGACAGCTCTAATGCTAATTCTACAATTAACAAAGCAGATACCTCCGAATCTAATCCTATTGAAATTCCTAGATCAGATACTCATATTACCGATTCAGGGAAATATTTAGAAGAAAACCCGGATCAGTCTCATATCAATGCATCTTCTGTAGAGAGAGAGAAGAGTGGCGTTGCCTTATTGGAGTGGCGGAGGATACAGCAGGTTATGCAGAATAGCATACCTCTTTGCAAGCGCCATAAGGAACCTTGTGTTGCTCGAGTAGTTAAGAAACAAGGTCCTAATAATGGCCGAAGATTTTATGTTTGTGCTCGTGCTGAGGGTCCCGCATCGAATCCTGAAGCAAATTGTGGTTACTTTAAATGGGCGGTTTCCAAATCTCGGCATAACTGA 1899 43.44 MDPKRAKSSPGKRCNYDADRRFRTNSPFLFRLRETYGSLLKLLDSFDADIICFQETKLRRQELRADLIIADGYESFVSCTRTSEKGRTGYSGVATFCRVKSAFSSNEVALPVRAEEGFTGLLESSHKGEGTMPAVAEGLEEFSKEELLKVDREGRCIVTDHGHFVLFNIYGPRAQSDDTERVLFKSNFYNILQKRWEHLLRQGKRIFVVGDLNIAPTSMDHCDAGPDFENNEFRRWLRSLLVGCGGHFTDIFRAKHPDRNDAYTCWPQSTGAEVFNYGTRIDHILCAGPCLHPDSNLPSHDIVNCHVLECDILSQYKRWKDGNSFRWKGEQTVKLEGSDHAPVYASLLEIPDTPQHSAPSLSARYNPKIHGLQQTLVSMLLKKQAAEGSATCKISNSFSSGNDVLGNCSQGLNGSFDNGDLSGLLPGESCSSTNIETEDSLLKTEESSGGGYSEEAPCNTLITHESLHTKTLPENETRKRVRRSSQMSLKSFFQTNSVISNVADSSNANSTINKADTSESNPIEIPRSDTHITDSGKYLEENPDQSHINASSVEREKSGVALLEWRRIQQVMQNSIPLCKRHKEPCVARVVKKQGPNNGRRFYVCARAEGPASNPEANCGYFKWAVSKSRHN 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1915641 1921729 - CmoCh07G004230.1 Cmo07g00423 385731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00423 632 MobiDBLite consensus disorder prediction 510 530 - -
Cmo07g00423 632 Pfam GRF zinc finger 577 625 IPR010666 GO:0008270
Cmo07g00423 632 Gene3D Endonuclease/exonuclease/phosphatase 24 348 IPR036691 -
Cmo07g00423 632 PANTHER AP ENDONUCLEASE 31 622 IPR004808 GO:0004518|GO:0006281
Cmo07g00423 632 SUPERFAMILY DNase I-like 35 347 IPR036691 -
Cmo07g00423 632 Pfam Endonuclease/Exonuclease/phosphatase family 39 288 IPR005135 GO:0003824
Cmo07g00423 632 PANTHER DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE 2 31 622 - -
Cmo07g00423 632 MobiDBLite consensus disorder prediction 510 528 - -
Cmo07g00423 632 ProSiteProfiles AP endonucleases family 1 profile. 20 349 IPR004808 GO:0004518|GO:0006281
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00423 K10772 APEX2; AP endonuclease 2 [EC:4.2.99.18] - csv:101222374 1025.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1115 . . . Bda10g00185 . . . . . . . Cma07g00426 . Car07g00373 Sed10g0999 . . Bhi03g00865 Tan03g2085 Cmetu04g0755 . Hepe04g1593 . . . . . . . . . . . Cone6ag1683 . Lsi01g00600 . . . . Blo06g00300 . . . . . . . . Cmo07g00423 . . . . . . . . . . . . . . . . . . . . . . Chy02g00572 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011738 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00423 Cmo_Chr07 FPKM 25.257801 29.527884 0.136198 0.129629 0.134828 0.0 0.128901 0.0 0.0 0.0