Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00424 | ATGGAGCAGTGGAAGACTGGAGATTTCTCTCAATCTATTGTTACAGCTGATTTAGTTCCTTCCTCGTCGCTTCCGCCTCAGCCTCTCTCTTTGCCGTCGAGTCGCCACCATAACAACCAACTTCCTGAATCCAGGTTAAGAACAGATGAGGAAGTAAAAGATCCTGTAGCAGTGAGAAAAATTCAGAAGGCAGATCGTGAAAAATTGAGGAGAGACAGGCTGAATGAACATTTTCTTGAGCTCGGAAACACATTAGATCCAGATAGGCCCAAAAATGACAAGGCTACCATCCTTACAGACACTATTCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAAGCTGACTATGAAGCTCTTTCTGAAGAATCACGCGAGTTAACACAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAATCAGACATCGAAAATCTAAATGCTCAGTATCAGCAAAGATTGAGGGTCATGTTTCCCTGGGCTACCATGGATCCTTCGGTGGTCATGGGGCCCCCATATTCATACCCAGTTCCTGTTCCCGTTCCCCCTGGACCAATTCCCATGCATCCATCATTGCAGCCCTTCACCTTCTTTGGAAGTCAGAATCCGGGTGCTATTCCTAACCCCTGTTCTACATTTGTCCCGTATACTGCTGCTGCCAATCATCCGATTGAACAGCCCTCTGCCCAATATGCTTCCAATTCACACATCTCTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCATCCTAAGCGTAGCAATGTGGAAAGGTGCGACGAATCTAATGATGTAGCAACGGACCTTGAACTTAAGATGCCTGGATCTTCAACACAACAGGATGCATCCTCTGCAAGTAAGAAAGGTAAGCAGTCACAGAGGAAAGAAAAAAGTGTTACAGATTGTAGTTCTTCAAGTAGATTTTCTTCGTCCCAAGTTCTACAAGATAGCTCCTCTAACAGCGTTGGCGACATTCCGAAACAGAACAACTGA | 1005 | 44.08 | MEQWKTGDFSQSIVTADLVPSSSLPPQPLSLPSSRHHNNQLPESRLRTDEEVKDPVAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYEALSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGSQNPGAIPNPCSTFVPYTAAANHPIEQPSAQYASNSHISSKQDSRSKSSDHPKRSNVERCDESNDVATDLELKMPGSSTQQDASSASKKGKQSQRKEKSVTDCSSSSRFSSSQVLQDSSSNSVGDIPKQNN | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1922093 | 1926789 | + | CmoCh07G004240.1 | Cmo07g00424 | 385732 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00424 | 334 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 58 | 108 | IPR011598 | GO:0046983 | |
Cmo07g00424 | 334 | MobiDBLite | consensus disorder prediction | 17 | 53 | - | - | |
Cmo07g00424 | 334 | Gene3D | - | 57 | 141 | IPR036638 | GO:0046983 | |
Cmo07g00424 | 334 | PANTHER | TRANSCRIPTION FACTOR BHLH11 | 31 | 333 | - | - | |
Cmo07g00424 | 334 | MobiDBLite | consensus disorder prediction | 306 | 334 | - | - | |
Cmo07g00424 | 334 | MobiDBLite | consensus disorder prediction | 276 | 291 | - | - | |
Cmo07g00424 | 334 | MobiDBLite | consensus disorder prediction | 17 | 39 | - | - | |
Cmo07g00424 | 334 | MobiDBLite | consensus disorder prediction | 233 | 334 | - | - | |
Cmo07g00424 | 334 | SMART | finulus | 64 | 114 | IPR011598 | GO:0046983 | |
Cmo07g00424 | 334 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 31 | 333 | IPR044579 | GO:0003700|GO:0055072 | |
Cmo07g00424 | 334 | MobiDBLite | consensus disorder prediction | 246 | 271 | - | - | |
Cmo07g00424 | 334 | CDD | bHLH_AtILR3_like | 63 | 137 | - | - | |
Cmo07g00424 | 334 | Pfam | Helix-loop-helix DNA-binding domain | 59 | 108 | IPR011598 | GO:0046983 | |
Cmo07g00424 | 334 | Coils | Coil | 98 | 153 | - | - | |
Cmo07g00424 | 334 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 59 | 128 | IPR036638 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00709 | Cmo07g00424 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00324 | Cmo-Chr2:1676112 | Cmo07g00424 | Cmo-Chr7:1922093 | 1.80E-22 | dispersed | |
Cmo07g00424 | Cmo-Chr7:1922093 | Cmo01g01205 | Cmo-Chr1:9755296 | 1.36E-22 | dispersed | |
Cmo03g00709 | Cmo-Chr3:6141152 | Cmo07g00424 | Cmo-Chr7:1922093 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10098 | PF00010 | HLH | 6.40E-09 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00424 | - | - | csv:101222613 | 533.102 |