Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00430 ATGGCGATTAGTCATCAGCACCTCAAATTGGAAGACCCCTTTCTTCAAAATTACAAGCCCTCAGAGCTACGGATCGCTTCTGAGTTTCTCACCACTTGGCTTCCCTTTCTTTCCAGAGATCTCTGTCAAGACTGCACGCAATTGCTCTCGGATCGAATCCGCGCCCTTGATCCAGCTGTCCGTCCCAACGAGGACTCGAGTTCTGCACCTCCCCCAAGAGAGAAAGACATGAGTGAGAGTAATGGGAATGAGGTTGATGCTTGTGATGCAAATTCTCTTGGAAGTTGGAAAGATGAAGCGGAAACAAATTCATTAGGGAGTTGGCAGGATGGCATAAATGAAGGGAATGAAGCTGATGGATTACCTGAAACTTCTTCTAGTGAGCCATCCTCTAAATTAAATTCCACCAAGACATCAGGGCCTCGATTGTCGTGGGCCGACATGACTCAGGAGGATGAACTAGAAGAAGAGGAAGATGAATGCGAAACAGAAAAAAGATTAGTCAATGCGAACGCAGGGAAATTAACAATATCGAAGGTTATTGAGAAGCCTAAGCTATCTAGAGAGCAAAGAGAGTACATCAGGTTCATGAGTGTTGGACGAAAGAAAGATTTTATTTGTTTGGAGAGGTTTAAAGGAAAATTTGTAAACATTCTTGAAGGACTTGAGCTTCATACAGGCATTTTTAGCGCTGCAGAACAGAAGAGAATAGTTGATCATGTTTATGCACTACAGGAGATGGGCATGAAGGGAGAATTAAGAGAACGAACATTTTCCGCTCCCAAAAAATGGATGAAGGGAAAGGGACGAGTAACTCTGCAGTTTGGGTGCTGTTACAATTATGCAGCTGATAAAAATGGCAACCCTCCTGGAATTCTTCAAAGTGAAATTGTGGATTCAATTCCTTCTCTCTTTAAGGTGATCATTAGAAGGTTGGTGAGATGGCATGTGATTCCTCCAACATGTGTTCCTGATAGTTGCATTGTGAACATCTACGACGAAGGGGACTGTATACCTCCCCATATTGACAACCATGATTTTGTTCGACCGTTTTGCACCGTGTCATTCCTCAGTGAATGCAATATTGTTTTTGGAACAAACCTTTCTATCGTAGGTCCTGGTCAATTTTCTGGGCCGATTGCAATCCCCCTGCCTGTCGGGTCTGTTCTTGTGTTGAATGGAAATAGTGCCGATGTTGCTAGACATTGTGTACCTGCAGTCCCTACAAAGAGGATATCAATTACATTTAGGAGAATAGATGAGCCCAAAAGGCCAATTGAGTATGCTCCAGAACCGGATTTGCAGGGAATCCAACCATTGCCCTACGAAGCAAGTAAAAATGATGTACCAACTTCTCCTGTATCATCAGAAAGGGAAATAAGGAGGCAGCCATTTAGGCGCGGTGGTGGTCATATGAGAACCAGGGGATCTGGAAACAGAAGCAACACTCTATTTGAGCCACGGAATCCAGGTAGGGCTCGGCATACGTCGTCGGATAGGAGGAGCAGAGTAAATCTAGAAGACAGCTGA 1530 44.25 MAISHQHLKLEDPFLQNYKPSELRIASEFLTTWLPFLSRDLCQDCTQLLSDRIRALDPAVRPNEDSSSAPPPREKDMSESNGNEVDACDANSLGSWKDEAETNSLGSWQDGINEGNEADGLPETSSSEPSSKLNSTKTSGPRLSWADMTQEDELEEEEDECETEKRLVNANAGKLTISKVIEKPKLSREQREYIRFMSVGRKKDFICLERFKGKFVNILEGLELHTGIFSAAEQKRIVDHVYALQEMGMKGELRERTFSAPKKWMKGKGRVTLQFGCCYNYAADKNGNPPGILQSEIVDSIPSLFKVIIRRLVRWHVIPPTCVPDSCIVNIYDEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGTNLSIVGPGQFSGPIAIPLPVGSVLVLNGNSADVARHCVPAVPTKRISITFRRIDEPKRPIEYAPEPDLQGIQPLPYEASKNDVPTSPVSSEREIRRQPFRRGGGHMRTRGSGNRSNTLFEPRNPGRARHTSSDRRSRVNLEDS 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1976540 1981046 - CmoCh07G004300.1 Cmo07g00430 385738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00430 509 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 323 420 IPR005123 -
Cmo07g00430 509 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 5 502 IPR044842 GO:0003729|GO:0006402|GO:0032451
Cmo07g00430 509 MobiDBLite consensus disorder prediction 492 509 - -
Cmo07g00430 509 MobiDBLite consensus disorder prediction 59 90 - -
Cmo07g00430 509 Coils Coil 151 171 - -
Cmo07g00430 509 MobiDBLite consensus disorder prediction 119 145 - -
Cmo07g00430 509 MobiDBLite consensus disorder prediction 103 161 - -
Cmo07g00430 509 MobiDBLite consensus disorder prediction 68 82 - -
Cmo07g00430 509 MobiDBLite consensus disorder prediction 423 509 - -
Cmo07g00430 509 SUPERFAMILY Clavaminate synthase-like 218 419 - -
Cmo07g00430 509 Pfam 2OG-Fe(II) oxygenase superfamily 222 417 IPR027450 -
Cmo07g00430 509 PANTHER RNA DEMETHYLASE ALKBH9B 5 502 - -
Cmo07g00430 509 Gene3D - 206 426 IPR037151 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00430 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] - csv:101203292 855.514
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00717 Cmo07g00430 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00430 Cmo-Chr7:1976540 Cmo17g01131 Cmo-Chr17:9211428 5.42E-33 dispersed
Cmo03g00717 Cmo-Chr3:6195228 Cmo07g00430 Cmo-Chr7:1976540 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1105 . . . Bda10g00181 . . . . . . Cma03g00691 . Car03g00636 Car07g00380 Sed14g1184 Cpe19g00854 Cpe10g00658 Bhi03g00874 Tan03g2066 Cmetu06g2758 . Hepe04g1586 . . . . . . . . . . . . Cone9ag1602 Lsi01g00607 . . Cme08g00920 . . . . Bpe10g00151 . . . . Cmo03g00717 Cmo07g00430 . . . . . . . . . . . . . . . . . . . . . Csa06g03318 Chy02g00580 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003475 1 1 1 0 1 2 2 2 2 1 2 2 1 2 1 2 2 3 2 1 1 1 1 2 2 1 2 3 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00430 Cmo_Chr07 FPKM 3.90467 4.905717 3.976887 4.370899 4.250156 4.46413 4.822898 3.94494 3.620245 3.884035