Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00439 ATGAGGCTTCTTCTTGTGTTGTTCTTTGGGCTCCTGTTGTTTTCCGGTGGTTTCTCTTCCTCCGCCGCCGACATCAGGGCGGAGATTCAGGCATTGATGTCTTTTAAGCTTAACCTTCATGACCCTCTTGGTGCATTGACTGGGTGGGATTCTTCAACCCCTTTGGCGCCTTGTGATTGGAGAGGCGTTTTATGTGTCAATAATCGAGTCACTGATCTTCGTTTGCCTCGTCTTCAACTTTCCGGCCGGTTGACCGATCAGTTGGCTAATTTGCCGATGCTCCGGAAGTTGAGTATTCGATCTAATTTCTTCAATGGTACCATTCCCTCTTCTTTGTCCAAATGTGCGTTTCTACGTTCGATTTTCTTACAGTACAACTCGTTTTCCGGTGACCTTCCGGTGGAGTTTGGGAACTTAACCAATCTTCATATTCTCAACGTGGCGGCGAATCGCCTCTCCGGTGGAATTCCCGACGACCTTCCGAGCAGTCTAAAGTATCTCGATCTTTCGTCGAATGCATTCTCCGGTCAGATTCCGAGGAGCGTTGTGAATATGACGGAGCTTCAGGTTGTGAATCTCTCTTTCAATAGATTTGGCGGCGAGATTCCGGCGAGCTTTGGTGAGCTGCAGAAGCTTAAACATCTTTGGCTGGATCATAATGTTTTAGAAGGGACATTGCCTTCGGCTCTTGCGAATTGTTCTTCGCTTGTTCATTTGAGCGTTGAGGGAAATGCCCTTCAAGGCATAATCCCGACAGCCATCGGAGCTCTTCCGAATCTTCAAGCTATTTCGCTCTCGCAAAATAGTCTCACTGGTTCAGTTCCTTACTCTCTGTTTTGCAATGTGTCGTCTCATGCGCCGTCTCTTCGAATCGTTCAACTTGGATTTAATGCCTTCACGGATATTGTCAAACCTCCGACAGCGACATGTTTTAGTGTTCTACAGGTCCTTGATATCCAACACAATCAGATAAAGGGGGAATTCCCCTTGTGGTTAATGGGTATTCCGACATTGACAGTCTTGGATTTTTCTGTCAATAATCTCTCCGGCGAGATTCCTCCCGGAATTGGGAATCTCTCGGGATTACAAGAGCTTAAAATGGCTAACAATTCGTTCCACGGCGCGATTCCGTCGGAAATCAAGAACTGTACTTCGATTTCTGTTATTGATTTTGAAGGAAATCGTTTAACCGGAGAGATTCCGCCGTTTTTGGGTTACATGAGAGGTTTGAAACGATTATCTCTCGGAGGAAATAATTTCTCCGGTAACGTTCCGGCCAGTTTGGGAAATCTTTTGGAGCTTGAAACCTTGAATTTAGCTGACAATGGCTTGAGTGGAACCCTTCCTCTTGAACAGCTAATGGGTCTTGGGAATTTAATGGCGATGGAGCTCGGCGGGAACGAATTTTCCGGCGAGGTTCCGATTGGTATTGGGAATCTCAGCCGTCTTGAGATTTTGAATCTCAGTGCTAATAGTTTTTCTGGGAAGATTCCGTCCAGTCTTGGCAGTCTCTTCAAGCTAACCACCTTGGATTTGAGCAAACAGAATCTCTCCGGCGAGCTGCCGTTTGAGCTCTCTGGTTTGCCTAATTTACAGGTGATTTCTCTACAAGAGAACAAGCTATCTGGGAAAGTTCCTGATGGATTCAGTAGTTTAATGGGTTTGCGGTATCTGAATCTAAGCTCTAATGGATTTTCCGGCGAAATCCCTTCCAATTATGGGTTTCTCCGATCACTTGTTTCACTGTCGTTGTCGAAAAATCACATTTCTGGGTCGATCCCTTCAGAGCTGGGGAACTGCTCTGTTCTAGAACATCTGGAGGTCCGTTCAAATGCTCTTTCCGGCGATATTCCGGCGGATATTTCTCGTTTATCTCATCTACAAGAGCTCGATTTGGGTGGAAATAATTTAACTGGCGAAATCCCTGAAGAGATCTCTCGTTGCTCGTCTTTAAAATCGCTCCTTCTCGACTCGAATCATCTCTCTGGTAGTATACCGGAGTCGTTATCAGAGCTCTTGAACTTAACCGAGCTCGACCTCTCATCCAACAATTTGAGTGGCGTTATTCCTCTTAATCTTAGCTCAATTACTGGATTAGTGAGGCTAAACGTCTCGAGTAATGATCTTGAAGGCGAAATCCCAGCTGGTTTAGGCTCTAGATTCAATAACTCAGCTGTGTTTGCTAATAATTCCAAGCTTTGTGGGAAACCGTTGGCTTGGAATTGTAAGGATACAAAGAAAAAAGATAGAACAAAGAGATTGATATTATTCATAGCAGTGGCCGCCAGTGGAGCTTGTCTTTTGGCTTTGTGTTGCTGCTTTTACATTTTCAGCTTGTTGCGATGGCGGAAGAGGCTGAAAGAGAGGGCGTCCGGCGAGAAGAAAACAAGCCCAGCAAGGGTTAGCTCAGCGGCAAGTGGCGGCCGTGGAAGCACAGAAAATGGAGGGCCAAAGCTTGTGATGTTCAACAACAAGATCACTCTAGCCGAAACAATTGAAGCAACAAGGCAATTCGATGAAGAAAATGTTCTAAGCAGGACACGTTATGGGTTAGTTTTCAAAGCTTGTTACAACGACGGCATGGTTCTTTCAATCCGCCGCCTCTCAAATGGTTCATTGGACGAAAACATGTTCAGAAAAGAAGCTGAATCATTGGGGAAAGTCAGGCACCGGAATTTGACTGTTCTTCGTGGCTACTACGCTGGCCCTCCTGACATGCGCCTATTAGTATACGATTACATGCCTAATGGCAACCTCGCCACTCTGCTTCAGGAAGCATCGCACCAAGATGGGCATGTTTTGAATTGGCCAATGCGGCATCTAATTGCTTTAGGCATCGCCCGTGGCTTAGCCTTTCTCCATTCCTCATCCATTATACATGGAGATGTCAAGCCACAAAGTGTTCTTTTCGACGCTGATTTCGAAGCTCATTTGTCGGATTTCGGGCTAGATCGACTAACCATTGCTGCTGCTGAAGCTTCCACATCTAGCTTGGTGGGTACTTTGGGGTACATTGCACCAGAAGCTGTGTTGACAGGGGAGGCCACGAAGGAATCGGATGTCTATAGCTTTGGCATTGTGTTGCTTGAGATTCTAACGGGGAAGAAGCCAGTGATGTTCACGGATGATGAAGACATTGTCAAGTGGGTGAAAAAGCAATTACAAAGAGGCCAAATTACTGAGCTTTTAGAGCCTGGCTTGCTCGAGCTGGACCCTGAATCCTCTGAATGGGAAGAGTTTTTGCTTGGTGTGAAAGTTGGATTACTTTGCACTGCACCCGATCCTCGCGATCGGCCAGCCATGTCGGATATCGTTTTCATGCTTGAAGGATGTCGTGTTGGACCCGACATGCCTTCCTCTGCTGATCCCACCTCCCAACCGTCACCAGCGTAA 3393 46.36 MRLLLVLFFGLLLFSGGFSSSAADIRAEIQALMSFKLNLHDPLGALTGWDSSTPLAPCDWRGVLCVNNRVTDLRLPRLQLSGRLTDQLANLPMLRKLSIRSNFFNGTIPSSLSKCAFLRSIFLQYNSFSGDLPVEFGNLTNLHILNVAANRLSGGIPDDLPSSLKYLDLSSNAFSGQIPRSVVNMTELQVVNLSFNRFGGEIPASFGELQKLKHLWLDHNVLEGTLPSALANCSSLVHLSVEGNALQGIIPTAIGALPNLQAISLSQNSLTGSVPYSLFCNVSSHAPSLRIVQLGFNAFTDIVKPPTATCFSVLQVLDIQHNQIKGEFPLWLMGIPTLTVLDFSVNNLSGEIPPGIGNLSGLQELKMANNSFHGAIPSEIKNCTSISVIDFEGNRLTGEIPPFLGYMRGLKRLSLGGNNFSGNVPASLGNLLELETLNLADNGLSGTLPLEQLMGLGNLMAMELGGNEFSGEVPIGIGNLSRLEILNLSANSFSGKIPSSLGSLFKLTTLDLSKQNLSGELPFELSGLPNLQVISLQENKLSGKVPDGFSSLMGLRYLNLSSNGFSGEIPSNYGFLRSLVSLSLSKNHISGSIPSELGNCSVLEHLEVRSNALSGDIPADISRLSHLQELDLGGNNLTGEIPEEISRCSSLKSLLLDSNHLSGSIPESLSELLNLTELDLSSNNLSGVIPLNLSSITGLVRLNVSSNDLEGEIPAGLGSRFNNSAVFANNSKLCGKPLAWNCKDTKKKDRTKRLILFIAVAASGACLLALCCCFYIFSLLRWRKRLKERASGEKKTSPARVSSAASGGRGSTENGGPKLVMFNNKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLSNGSLDENMFRKEAESLGKVRHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSSSIIHGDVKPQSVLFDADFEAHLSDFGLDRLTIAAAEASTSSLVGTLGYIAPEAVLTGEATKESDVYSFGIVLLEILTGKKPVMFTDDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPRDRPAMSDIVFMLEGCRVGPDMPSSADPTSQPSPA 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2019370 2022762 - CmoCh07G004390.1 Cmo07g00439 385747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00439 1130 Pfam Leucine rich repeat 577 637 IPR001611 GO:0005515
Cmo07g00439 1130 Pfam Leucine rich repeat 506 564 IPR001611 GO:0005515
Cmo07g00439 1130 Pfam Leucine rich repeat 187 246 IPR001611 GO:0005515
Cmo07g00439 1130 SUPERFAMILY RNI-like 309 614 - -
Cmo07g00439 1130 SMART LRR_sd22_2 257 284 - -
Cmo07g00439 1130 SMART LRR_sd22_2 672 693 - -
Cmo07g00439 1130 SMART LRR_sd22_2 576 608 - -
Cmo07g00439 1130 SMART LRR_sd22_2 624 647 - -
Cmo07g00439 1130 SMART LRR_sd22_2 209 235 - -
Cmo07g00439 1130 SMART LRR_sd22_2 528 551 - -
Cmo07g00439 1130 SMART LRR_sd22_2 139 169 - -
Cmo07g00439 1130 ProSiteProfiles Protein kinase domain profile. 838 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00439 1130 Pfam Leucine Rich repeat 674 687 IPR001611 GO:0005515
Cmo07g00439 1130 Pfam Protein kinase domain 848 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00439 1130 MobiDBLite consensus disorder prediction 791 818 - -
Cmo07g00439 1130 Gene3D Transferase(Phosphotransferase) domain 1 914 1117 - -
Cmo07g00439 1130 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 603 675 - -
Cmo07g00439 1130 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 9 606 - -
Cmo07g00439 1130 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 667 1126 - -
Cmo07g00439 1130 SMART LRR_typ_2 257 281 IPR003591 -
Cmo07g00439 1130 SMART LRR_typ_2 672 696 IPR003591 -
Cmo07g00439 1130 SMART LRR_typ_2 528 551 IPR003591 -
Cmo07g00439 1130 SMART LRR_typ_2 91 115 IPR003591 -
Cmo07g00439 1130 SMART LRR_typ_2 407 430 IPR003591 -
Cmo07g00439 1130 SMART LRR_typ_2 335 359 IPR003591 -
Cmo07g00439 1130 SMART LRR_typ_2 480 504 IPR003591 -
Cmo07g00439 1130 SMART LRR_typ_2 431 455 IPR003591 -
Cmo07g00439 1130 SMART LRR_typ_2 576 600 IPR003591 -
Cmo07g00439 1130 SMART LRR_typ_2 185 208 IPR003591 -
Cmo07g00439 1130 SMART LRR_typ_2 139 163 IPR003591 -
Cmo07g00439 1130 SMART LRR_typ_2 624 648 IPR003591 -
Cmo07g00439 1130 SMART LRR_typ_2 209 232 IPR003591 -
Cmo07g00439 1130 Gene3D Ribonuclease Inhibitor 250 350 IPR032675 -
Cmo07g00439 1130 Gene3D Ribonuclease Inhibitor 351 452 IPR032675 -
Cmo07g00439 1130 ProSiteProfiles Leucine-rich repeat profile. 674 695 IPR001611 GO:0005515
Cmo07g00439 1130 MobiDBLite consensus disorder prediction 796 810 - -
Cmo07g00439 1130 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Cmo07g00439 1130 SUPERFAMILY Protein kinase-like (PK-like) 819 1119 IPR011009 -
Cmo07g00439 1130 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 603 675 - -
Cmo07g00439 1130 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 9 606 - -
Cmo07g00439 1130 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 667 1126 - -
Cmo07g00439 1130 SUPERFAMILY L domain-like 555 734 - -
Cmo07g00439 1130 Gene3D Phosphorylase Kinase; domain 1 811 913 - -
Cmo07g00439 1130 Gene3D Ribonuclease Inhibitor 78 160 IPR032675 -
Cmo07g00439 1130 Gene3D Ribonuclease Inhibitor 453 746 IPR032675 -
Cmo07g00439 1130 Gene3D Ribonuclease Inhibitor 18 77 IPR032675 -
Cmo07g00439 1130 Gene3D Ribonuclease Inhibitor 161 249 IPR032675 -
Cmo07g00439 1130 SUPERFAMILY L domain-like 27 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00439 Cmo-Chr7:2019370 Cmo17g00121 Cmo-Chr17:692314 1.09E-172 dispersed
Cmo11g00783 Cmo-Chr11:3859877 Cmo07g00439 Cmo-Chr7:2019370 2.47E-84 dispersed
Cmo03g00727 Cmo-Chr3:6230533 Cmo07g00439 Cmo-Chr7:2019370 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74458 PF00069 Pkinase 2.40E-34 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00439 - - csv:101203208 1895.17