Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00440 ATGAGGATACTTTGTGATTCCTGTGAAAATGCTGCAGCGACCTTGTTCTGTGCAGCTGATGAGGCTGCTCTTTGTGCAGCATGTGATGTCAAGGTGCACATGTGCAATAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTCGCAAGTCCGAGCGAAGTTTCCTGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGAAGCTCCTTGTGCTTACAATGCGACGTGGTTGTTCATGTGGGAGGCAAGAGAATGCACAAGAGATATCTTCGGCTGGGGCAGAGAGTTGAGTTTCCTGGGGATAAACAAAATGATCCAAAGGACTTGAATGTACAAGCGATGGAACAGGTTGAGACAGTGAGAGGGCAGAATCAAGATGGGGTTGATTCAAATGGAGATGGGCATTCCAAGCGGGGGAACGAAGTGATTGATTTGAACATGTAG 459 47.28 MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSCCDICENAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQNDPKDLNVQAMEQVETVRGQNQDGVDSNGDGHSKRGNEVIDLNM 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2026405 2027869 + CmoCh07G004400.1 Cmo07g00440 385748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00440 152 Gene3D Classic Zinc Finger 1 93 - -
Cmo07g00440 152 MobiDBLite consensus disorder prediction 127 152 - -
Cmo07g00440 152 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cmo07g00440 152 SMART bboxneu5 51 96 IPR000315 GO:0008270
Cmo07g00440 152 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 132 - -
Cmo07g00440 152 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270
Cmo07g00440 152 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270
Cmo07g00440 152 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Cmo07g00440 152 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 132 - -
Cmo07g00440 152 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmo07g00440 152 CDD Bbox1_BBX-like 55 95 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00794 Cmo07g00440 CCT
Cmo04g00794 Cmo07g00440 ECH
Cmo03g00728 Cmo07g00440 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00794 Cmo-Chr4:3978002 Cmo07g00440 Cmo-Chr7:2026405 3.03E-56 dispersed
Cmo07g00440 Cmo-Chr7:2026405 Cmo16g00660 Cmo-Chr16:3268929 3.81E-47 dispersed
Cmo03g00728 Cmo-Chr3:6238667 Cmo07g00440 Cmo-Chr7:2026405 4.42E-78 wgd
Cmo05g00289 Cmo-Chr5:1251990 Cmo07g00440 Cmo-Chr7:2026405 1.11E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10102 PF00643 zf-B_box 8.60E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00440 - - cpep:111781183 285.034