Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00450 ATGTCAATGTCTGGTTTCTTCACTCTAGGCTCCACCGACCAAGAACACCAACAACCCGACACGAATCGCCCAAACCAAACACTCCCCCCGGACACCTTGTTTTGGTACAAGCCCGGAAGCGTCGAGCTATGGCAGCCCCAACAGCACCAACAACAATCGCTATTTCAAGCGCGGTCTCACAACAACAACAACAACAACAATCTGTACTCGGATGAATCCTCGTCCAGATCCGGTAATTTAATGATGATTAGCTCCGGATCAGGCGGAGGGGGAATCAGCTGCCAAGACTGCGGCAACCAAGCCAAAAAAGACTGTACCCATATGCGATGCAGGAGTTGCTGCAACACCCGAGGCTTCCCTTGCCAGACCCATGTCAAAAGCACTTGGGTCCCTGCCGCCAAGCGCCGTCAGCGCCAACAAAAACTCGCCGCCTTACAAACCCATCCCAAACGCCACACAGATTATAACATCCCCACCACCAACACTTCTGGGTTAGAAATTGGGAATTTCCCGGCGGAATTGAACTCCCCGGCTGTATTCCGTTGCGTTCGTCTCAGCTCCACCGACGACACCGACGATCAATACGCATATCAAACGGCAGTGAACATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAAATAATTATCTTCCCGGTGAGACCTCGTCCGGCGGCGGTGGTGGGTTGCAACCACTGAATTTCATCGCCGGTGCCGCCGATGCCAACGCTGCTTCCTCCGCCGCATTACCCTTACTCGATCCCTCTTCGTTATACTCAGCGCCGCTCAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCCTAA 849 52.89 MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQQSLFQARSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2060308 2061929 + CmoCh07G004500.1 Cmo07g00450 385758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00450 282 PANTHER PROTEIN SHORT INTERNODES 3 278 - -
Cmo07g00450 282 MobiDBLite consensus disorder prediction 1 32 - -
Cmo07g00450 282 MobiDBLite consensus disorder prediction 59 80 - -
Cmo07g00450 282 Pfam Domain of unknown function (DUF702) 91 218 - -
Cmo07g00450 282 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 3 278 IPR007818 GO:0003700|GO:0006355
Cmo07g00450 282 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 93 135 IPR006510 -
Cmo07g00450 282 MobiDBLite consensus disorder prediction 1 29 - -
Cmo07g00450 282 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 170 217 IPR006511 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00450 Cmo16g00699 CCT
Cmo07g00450 Cmo16g00699 ECH
Cmo03g00734 Cmo07g00450 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00450 Cmo-Chr7:2060308 Cmo19g00311 Cmo-Chr19:2339193 3.21E-68 dispersed
Cmo01g02001 Cmo-Chr1:14124980 Cmo07g00450 Cmo-Chr7:2060308 7.54E-62 wgd
Cmo12g00381 Cmo-Chr12:2364323 Cmo07g00450 Cmo-Chr7:2060308 2.05E-68 wgd
Cmo16g00699 Cmo-Chr16:3464046 Cmo07g00450 Cmo-Chr7:2060308 1.76E-65 wgd
Cmo03g00734 Cmo-Chr3:6254612 Cmo07g00450 Cmo-Chr7:2060308 3.46E-116 wgd
Cmo05g00287 Cmo-Chr5:1245268 Cmo07g00450 Cmo-Chr7:2060308 1.40E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10104 PF05142 DUF702 5.20E-54 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00450 - - cmax:111497365 484.567