Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00462 ATGCATCCCGTATTTCGAGCCGAGAAACCAAACGGAGCTATTCACTTGAAGGCTGTTGAAATGAATGCAATTGCAGTGCCAAGTTCCAGTTGCTATGTTTTTGACAATTCTAGTCACATCATTGACTTTGTATCCTACTCAGAATGCTGGATTGGACACCCATTTGAATATGAGGAGAAGGGTTCTGACTTGGTGGTTCAGTTTTGCAAAGATGTGGAAAGTAGATCACAAGTGGGATATGTAGATTTTGGTCGATTTGATAAGTTCAACTACTTTGTATCTGGTTCAGGACATGCCGACTTTGTTCAAGATTATTACAATGGCGACCTGACTTCTTGTGAGCATAGTTATGACAAATTGGGGAGGACTGCGCAGGTAAATGTTATGTGTAGAGGTTGTTTAAATGGACAATGTAAAGTGCTCTTGGAATATGTTGATACTAGTGATGAACGCATTCATCATCTTATTATAGGTGGTCTGGGATGCATCTGCAATATCACTCATGAGTCCAGTTGCAGGTCTTGCACAGTTATTGTCGATCTTGCCATCCCTTGTGAGATACAAGGCCCACGTGTTTTCAAAGGGTTTACTGTTGGTTTTCACCCTCGATCTTGGGAAATTGTTTACAATGGTTTGACTCAATTAGGCTATGAGAAGCCACACCGTGCATTCAGCTTTAGCACGGAGCAGACTAGTCTGGTTCTTTATATGACTGCAATTGCATCACTTTCCTCTTTTGTACAGAAACCGATTATTCAGGTTTTTCCAGAAAATGGACTAGAGGTGAAAGTATCGGGCTCAGGGGCAACTGGGAGCTACCCTACAACTTTGTCACCCTCGATGTTGATGATTGACTGGAGATGTGACATTGCCAGGGACGTTCCATATGCTGTTAACGTCACAATCCCTGTGGCTGATTATGAACCAATTAATTTTTTTCTTGCCAAAATGTGTGGCGTGAAAGCTAAACCTAAGTCTACCTTTGAGTTTCATATTTTGCAGAAAAAAGGCAAGACGTACAAGGAGATTACATGCAAGGATGGGCCACATTTGGAATACTCTCTTGCTTTCTGGATAACTTTCTGCAAAGTAACTGGTCTCCTGCTGCAACCTCTTGCTCTATTTGATCAACTAGAAAATAAGTCATTCATAGTCGGATCGTCGCTATTTTGCTGTGGAGGATTTGTTTACAAGACCCAAGTGCAAGGCCAGCGTGGAATTGATGCATTGCCGGGCATGACATTACTATCCGCCTGCTTGGAAACTGTGAGTGGTGCAGGACATAGCTACCCGAGAGCGGAAGGCTTCAACGATGCAATTGTCATCTTTAGAGAGTTCACTAAAGGAATTCGGCTGTTTGCCATTGGATCAAGGACTATAGGCAGACGCAAAAGAGCTTTAGAAATGAAAAGATTCCAAACCCAAATAGGAACCTTAGAGGGTTTGAGGGATGAGATCAAATCTGCATTGGAGAAAGAATGGCCACAAACAGTTTGGTGCGCTGATATCTTGGCTTTAGCTGCAAGAGATTCCACTGTCATTGCGGGTGGACCCTCTTGGGAGGTTCCATTGGGAAGGAAGGACTCCGAGAACTGCGAAACTTTCGCTCACAACTCTGCCTCTGATTCTCCGTCTACTTGCAATTTAAATCTTCTAGGGTTGGAAAGATTGACATCGTTTTCATTGCTGAATCACCGGAATTACACTGTTGCTTCACCGGAATCAAAACCAGCCCCTTCAGAGAGAGTTACGGCCATTGTGGATGAGATCTCCGGTCTCACGCTACTTGAGGTTGCAGACCTTACGGAGGTTCTTCGAGAAAAGTTGGATGTGAAGGATATGCCGGTAATGGCGGTGATGATGCCGGGGATGGGGTTTGGCGGCTTGCAAAACGCTGGCAAGGGTGGTTCTGGGGCGAAAGGCGGTGAAGAGAAGAAGGCGGAGAAGACAGCGTTTGATGTGAAGCTTGAAGCTTTTGATGCTGCGTCGAAGATCAAGGTCATTAAGGAAGTGCGAATGTTTACGAATTTGGGATTGAAGGAAGCTAAGGATTTGGTGGAGAAGGCGCCAACGCTTCTAAAGAAGGGGGTGACGAAAGAGGAAGCTGATACGATTATTGCCAAGATGAAGGAGGTTGGCGCCAAAGTTTCAATGGAGTGA 2160 44.54 MHPVFRAEKPNGAIHLKAVEMNAIAVPSSSCYVFDNSSHIIDFVSYSECWIGHPFEYEEKGSDLVVQFCKDVESRSQVGYVDFGRFDKFNYFVSGSGHADFVQDYYNGDLTSCEHSYDKLGRTAQVNVMCRGCLNGQCKVLLEYVDTSDERIHHLIIGGLGCICNITHESSCRSCTVIVDLAIPCEIQGPRVFKGFTVGFHPRSWEIVYNGLTQLGYEKPHRAFSFSTEQTSLVLYMTAIASLSSFVQKPIIQVFPENGLEVKVSGSGATGSYPTTLSPSMLMIDWRCDIARDVPYAVNVTIPVADYEPINFFLAKMCGVKAKPKSTFEFHILQKKGKTYKEITCKDGPHLEYSLAFWITFCKVTGLLLQPLALFDQLENKSFIVGSSLFCCGGFVYKTQVQGQRGIDALPGMTLLSACLETVSGAGHSYPRAEGFNDAIVIFREFTKGIRLFAIGSRTIGRRKRALEMKRFQTQIGTLEGLRDEIKSALEKEWPQTVWCADILALAARDSTVIAGGPSWEVPLGRKDSENCETFAHNSASDSPSTCNLNLLGLERLTSFSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQNAGKGGSGAKGGEEKKAEKTAFDVKLEAFDAASKIKVIKEVRMFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEVGAKVSME 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2107826 2116953 - CmoCh07G004620.1 Cmo07g00462 385770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00462 719 Gene3D - 465 551 - -
Cmo07g00462 719 SUPERFAMILY Heme-dependent peroxidases 481 538 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo07g00462 719 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 584 654 IPR036235 GO:0003735|GO:0005840|GO:0006412
Cmo07g00462 719 Pfam Peroxidase 482 593 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo07g00462 719 Pfam Ribosomal protein L7/L12 C-terminal domain 652 718 IPR013823 GO:0003735|GO:0006412
Cmo07g00462 719 TIGRFAM L12: ribosomal protein bL12 584 718 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cmo07g00462 719 Gene3D Single helix bin 582 648 IPR036235 GO:0003735|GO:0005840|GO:0006412
Cmo07g00462 719 SUPERFAMILY ClpS-like 648 718 IPR014719 -
Cmo07g00462 719 CDD Ribosomal_L7_L12 581 718 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cmo07g00462 719 PRINTS Plant peroxidase signature 516 531 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo07g00462 719 PRINTS Plant peroxidase signature 497 507 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo07g00462 719 PANTHER G-PROTEIN COUPLED RECEPTOR 14 325 - -
Cmo07g00462 719 PANTHER G-PROTEIN COUPLED RECEPTOR 383 441 - -
Cmo07g00462 719 Hamap 50S ribosomal protein L7/L12 [rplL]. 580 719 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cmo07g00462 719 Gene3D - 649 718 IPR014719 -
Cmo07g00462 719 ProSiteProfiles Plant heme peroxidase family profile. 484 529 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo07g00462 719 Pfam Ribosomal protein L7/L12 dimerisation domain 584 623 IPR008932 GO:0003735|GO:0005840|GO:0006412
Cmo07g00462 719 PRINTS Haem peroxidase superfamily signature 498 515 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo07g00462 719 PRINTS Haem peroxidase superfamily signature 516 528 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00462 - - - csv:101207936 564.688
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00743 Cmo07g00462 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02831 Cmo-Chr4:20258715 Cmo07g00462 Cmo-Chr7:2107826 5.23E-17 dispersed
Cmo07g00462 Cmo-Chr7:2107826 Cmo13g00874 Cmo-Chr13:7951170 6.08E-42 dispersed
Cmo15g00354 Cmo-Chr15:1659121 Cmo07g00462 Cmo-Chr7:2107826 1.33E-19 dispersed
Cmo01g00474 Cmo-Chr1:2264307 Cmo07g00462 Cmo-Chr7:2107826 2.94E-33 transposed
Cmo07g00656 Cmo-Chr7:2952356 Cmo07g00462 Cmo-Chr7:2107826 2.52E-31 transposed
Cmo16g00691 Cmo-Chr16:3419492 Cmo07g00462 Cmo-Chr7:2107826 5.32E-19 wgd
Cmo03g00742 Cmo-Chr3:6288117 Cmo07g00462 Cmo-Chr7:2107826 1.35E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1044 . . . . . . Bma09g00091 . . . Cma03g00717 Cma07g00464 Car03g00657 Car07g00411 . Cpe19g00826 Cpe10g00639 Bhi03g00913 . . . . . . . . . . . . . . . . Cone9ag1574 Lsi01g00642 . . Cme08g00889 . . . . . . . . . Cmo03g00743 Cmo07g00462 . . . . . . . . . . . . . . . . . . . . . Csa06g03284 Chy02g00612 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002272 2 6 1 2 1 2 3 1 1 1 1 1 3 2 1 3 1 2 3 2 2 2 2 1 2 2 1 5 2 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00462 Cmo_Chr07 FPKM 1.705989 0.858257 2.243214 1.64038 4.754555 1.708392 5.142451 1.766143 2.160847 2.228187